Wall clock time and date at job start Tue Mar 31 2020 22:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47281 * 2 1 4 4 C 1.52997 * 109.47083 * 239.99998 * 2 1 3 5 5 C 1.53005 * 109.47125 * 174.99962 * 4 2 1 6 6 H 1.08999 * 109.47053 * 55.00468 * 5 4 2 7 7 C 1.52997 * 109.46994 * 175.00181 * 5 4 2 8 8 N 1.46498 * 109.46972 * 295.00359 * 5 4 2 9 9 C 1.34776 * 120.00118 * 155.00303 * 8 5 4 10 10 O 1.21628 * 119.99730 * 359.97438 * 9 8 5 11 11 C 1.47252 * 120.00129 * 179.97438 * 9 8 5 12 12 N 1.30564 * 125.54172 * 180.29576 * 11 9 8 13 13 C 1.30694 * 115.90841 * 180.19663 * 12 11 9 14 14 C 1.50698 * 122.11242 * 179.76145 * 13 12 11 15 15 C 1.53006 * 109.47184 * 254.71684 * 14 13 12 16 16 C 1.52997 * 109.47342 * 134.71460 * 14 13 12 17 17 C 1.52999 * 109.47150 * 14.71127 * 14 13 12 18 18 C 1.34237 * 115.78263 * 359.49382 * 13 12 11 19 19 S 1.71069 * 109.08970 * 0.26736 * 18 13 12 20 20 N 1.46508 * 109.47129 * 120.00177 * 2 1 3 21 21 C 1.36934 * 120.00087 * 274.99806 * 20 2 1 22 22 H 1.07996 * 119.99976 * 0.02562 * 21 20 2 23 23 C 1.38813 * 119.99703 * 179.97438 * 21 20 2 24 24 N 1.31614 * 120.00420 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 119.99520 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47313 * 59.99716 * 25 23 21 27 27 H 1.48496 * 109.46752 * 180.02562 * 25 23 21 28 28 H 1.48498 * 109.46918 * 299.99919 * 25 23 21 29 29 H 1.09001 * 109.47281 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46840 * 299.99675 * 1 2 3 31 31 H 1.08999 * 109.47087 * 59.99362 * 1 2 3 32 32 H 1.09003 * 109.47089 * 55.00455 * 4 2 1 33 33 H 1.08998 * 109.47505 * 295.00004 * 4 2 1 34 34 H 1.09004 * 109.47030 * 179.97438 * 7 5 4 35 35 H 1.09002 * 109.47384 * 300.00016 * 7 5 4 36 36 H 1.09003 * 109.47459 * 60.00165 * 7 5 4 37 37 H 0.97004 * 120.00148 * 334.99374 * 8 5 4 38 38 H 1.09001 * 109.47002 * 299.99404 * 15 14 13 39 39 H 1.08993 * 109.46955 * 59.99842 * 15 14 13 40 40 H 1.09000 * 109.47050 * 179.97438 * 15 14 13 41 41 H 1.09000 * 109.47140 * 180.02562 * 16 14 13 42 42 H 1.09001 * 109.47230 * 299.99432 * 16 14 13 43 43 H 1.09001 * 109.47375 * 60.00270 * 16 14 13 44 44 H 1.09001 * 109.47362 * 300.00765 * 17 14 13 45 45 H 1.09002 * 109.46716 * 60.00124 * 17 14 13 46 46 H 1.09000 * 109.47486 * 180.02562 * 17 14 13 47 47 H 1.08002 * 125.45489 * 180.23864 * 18 13 12 48 48 H 0.97001 * 119.99557 * 95.00207 * 20 2 1 49 49 H 0.97001 * 120.00123 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6133 -1.3137 6 1 3.9954 -0.9923 -0.3869 7 6 4.0851 -1.4382 -2.4925 8 7 3.9479 0.7894 -1.4924 9 6 5.1612 1.2136 -1.0867 10 8 5.9378 0.4319 -0.5718 11 6 5.5464 2.6233 -1.2668 12 7 6.6909 3.1476 -0.9203 13 6 6.8318 4.4237 -1.1647 14 6 8.0932 5.1714 -0.8171 15 6 7.8464 6.0425 0.4164 16 6 8.5010 6.0589 -1.9948 17 6 9.2130 4.1721 -0.5199 18 6 5.7842 5.0253 -1.7499 19 16 4.5417 3.8746 -1.9918 20 7 2.0184 -0.6907 1.1962 21 6 2.1492 -0.0076 2.3758 22 1 1.8920 1.0401 2.4244 23 6 2.6114 -0.6622 3.5093 24 7 2.9244 -1.9392 3.4501 25 14 2.7892 0.2695 5.1186 26 1 1.4667 0.8064 5.5285 27 1 3.2982 -0.6489 6.1685 28 1 3.7445 1.3919 4.9378 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.6054 -0.2617 -2.1370 33 1 1.7517 -1.7715 -1.2056 34 1 5.1714 -1.3610 -2.5387 35 1 3.8001 -2.4819 -2.3595 36 1 3.6546 -1.0593 -3.4194 37 1 3.3284 1.4129 -1.9028 38 1 7.0487 6.7545 0.2046 39 1 7.5559 5.4102 1.2553 40 1 8.7589 6.5829 0.6680 41 1 9.4136 6.5994 -1.7436 42 1 8.6769 5.4384 -2.8735 43 1 7.7033 6.7709 -2.2065 44 1 8.9224 3.5398 0.3191 45 1 9.3888 3.5516 -1.3986 46 1 10.1252 4.7129 -0.2680 47 1 5.7336 6.0688 -2.0238 48 1 2.2491 -1.6318 1.1525 49 1 3.2470 -2.3967 4.2423 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134657715.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:22 Heat of formation + Delta-G solvation = -21.982058 kcal Electronic energy + Delta-G solvation = -27874.208092 eV Core-core repulsion = 24154.931058 eV Total energy + Delta-G solvation = -3719.277034 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.61969 -40.65943 -38.35043 -36.96600 -36.11747 -34.07552 -32.47787 -31.01666 -30.40741 -28.49552 -28.15768 -27.60483 -26.91356 -25.66419 -24.14056 -22.19373 -21.48821 -21.21462 -20.14043 -19.33955 -18.96626 -17.91396 -17.34860 -16.74517 -16.60339 -16.31073 -15.68846 -15.61521 -15.57083 -15.16521 -14.82847 -14.64241 -14.48717 -14.39349 -14.19808 -13.61552 -13.38239 -13.32478 -13.19240 -13.09210 -13.01175 -12.94755 -12.78568 -12.66936 -12.58955 -12.29219 -12.23530 -11.93822 -11.91828 -11.84273 -11.78669 -11.58225 -11.46026 -11.43613 -10.91329 -10.74085 -10.68396 -10.21583 -9.73398 -8.94609 -7.92590 -5.17345 -0.82316 0.10749 0.56069 1.28544 1.39887 1.43995 1.48522 1.79113 2.15792 2.55136 3.23256 3.41985 3.64572 3.80135 3.83822 4.02025 4.03121 4.10844 4.15983 4.24736 4.30862 4.38857 4.53223 4.67718 4.73723 4.76603 4.79630 4.80008 4.83105 4.86854 4.92801 4.99360 5.00335 5.03660 5.12413 5.13787 5.20573 5.28979 5.33900 5.37621 5.38765 5.43605 5.48375 5.57056 5.65812 6.28408 6.30955 6.68731 7.07293 7.36865 8.17848 8.36797 9.31047 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010137 B = 0.003638 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2761.598704 B = 7694.979581 C = 9061.095123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.161 3.839 3 H 0.041 0.959 4 C -0.118 4.118 5 C 0.147 3.853 6 H 0.050 0.950 7 C -0.152 4.152 8 N -0.690 5.690 9 C 0.588 3.412 10 O -0.557 6.557 11 C -0.049 4.049 12 N -0.431 5.431 13 C 0.046 3.954 14 C 0.002 3.998 15 C -0.136 4.136 16 C -0.132 4.132 17 C -0.130 4.130 18 C -0.249 4.249 19 S 0.261 5.739 20 N -0.732 5.732 21 C -0.227 4.227 22 H 0.069 0.931 23 C -0.076 4.076 24 N -0.968 5.968 25 Si 0.958 3.042 26 H -0.272 1.272 27 H -0.296 1.296 28 H -0.290 1.290 29 H 0.043 0.957 30 H 0.028 0.972 31 H 0.079 0.921 32 H 0.112 0.888 33 H 0.083 0.917 34 H 0.035 0.965 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.410 0.590 38 H 0.073 0.927 39 H 0.031 0.969 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.051 0.949 43 H 0.078 0.922 44 H 0.032 0.968 45 H 0.043 0.957 46 H 0.076 0.924 47 H 0.223 0.777 48 H 0.371 0.629 49 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.094 18.703 -20.042 27.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.053 3.947 3 H 0.059 0.941 4 C -0.157 4.157 5 C 0.043 3.957 6 H 0.069 0.931 7 C -0.211 4.211 8 N -0.343 5.343 9 C 0.370 3.630 10 O -0.434 6.434 11 C -0.323 4.323 12 N -0.148 5.148 13 C -0.093 4.093 14 C -0.001 4.001 15 C -0.194 4.194 16 C -0.190 4.190 17 C -0.187 4.187 18 C -0.390 4.390 19 S 0.516 5.484 20 N -0.372 5.372 21 C -0.359 4.359 22 H 0.087 0.913 23 C -0.269 4.269 24 N -0.619 5.619 25 Si 0.788 3.212 26 H -0.198 1.198 27 H -0.223 1.223 28 H -0.218 1.218 29 H 0.062 0.938 30 H 0.048 0.952 31 H 0.098 0.902 32 H 0.131 0.869 33 H 0.102 0.898 34 H 0.055 0.945 35 H 0.095 0.905 36 H 0.106 0.894 37 H 0.247 0.753 38 H 0.092 0.908 39 H 0.050 0.950 40 H 0.101 0.899 41 H 0.098 0.902 42 H 0.070 0.930 43 H 0.097 0.903 44 H 0.052 0.948 45 H 0.062 0.938 46 H 0.095 0.905 47 H 0.239 0.761 48 H 0.202 0.798 49 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 2.955 17.893 -19.758 26.819 hybrid contribution 1.012 0.158 1.773 2.047 sum 3.966 18.051 -17.985 25.788 Atomic orbital electron populations 1.22297 0.97392 1.01006 1.00828 1.20558 0.92907 0.95184 0.86038 0.94109 1.22121 0.91980 1.02814 0.98751 1.20998 0.96259 0.79540 0.98930 0.93127 1.22107 1.00369 1.00515 0.98067 1.45615 1.14758 1.12365 1.61567 1.17118 0.82776 0.84895 0.78166 1.90833 1.52684 1.55893 1.43996 1.27181 0.95646 0.99484 1.09951 1.66413 1.20118 1.12285 1.15954 1.20601 0.99315 0.87959 1.01378 1.19341 0.88852 0.94248 0.97679 1.21892 1.03337 0.98785 0.95355 1.21898 1.02948 0.98677 0.95460 1.21696 0.97843 0.98298 1.00882 1.26998 0.96977 1.08004 1.07007 1.83255 1.16281 0.97849 1.50983 1.42597 1.78246 1.10127 1.06240 1.19459 1.34135 0.93765 0.88543 0.91311 1.25398 1.03552 0.96811 1.01101 1.69778 1.53027 1.10018 1.29081 0.85435 0.77904 0.77310 0.80542 1.19807 1.22258 1.21752 0.93786 0.95234 0.90208 0.86940 0.89845 0.94549 0.90542 0.89417 0.75340 0.90799 0.94980 0.89912 0.90196 0.92964 0.90343 0.94843 0.93813 0.90471 0.76077 0.79755 0.94392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.92 9.49 71.98 0.68 -4.24 16 2 C 0.16 5.81 2.84 44.99 0.13 5.93 16 3 H 0.04 1.50 7.56 -2.39 -0.02 1.48 16 4 C -0.12 -3.24 4.29 30.60 0.13 -3.11 16 5 C 0.15 4.73 2.52 44.99 0.11 4.84 16 6 H 0.05 2.28 7.05 -2.39 -0.02 2.27 16 7 C -0.15 -3.98 9.48 71.98 0.68 -3.30 16 8 N -0.69 -20.67 4.44 -445.96 -1.98 -22.65 16 9 C 0.59 22.26 7.77 86.61 0.67 22.93 16 10 O -0.56 -27.47 16.73 -4.12 -0.07 -27.54 16 11 C -0.05 -1.55 7.46 87.25 0.65 -0.90 16 12 N -0.43 -14.48 9.52 -178.25 -1.70 -16.17 16 13 C 0.05 1.11 5.38 41.81 0.22 1.33 16 14 C 0.00 0.03 0.90 -52.93 -0.05 -0.02 16 15 C -0.14 -2.35 8.42 71.98 0.61 -1.74 16 16 C -0.13 -1.61 8.12 71.98 0.58 -1.03 16 17 C -0.13 -3.05 7.89 71.98 0.57 -2.48 16 18 C -0.25 -4.25 10.10 66.91 0.68 -3.58 16 19 S 0.26 4.79 22.31 -56.49 -1.26 3.53 16 20 N -0.73 -36.54 4.49 -322.93 -1.45 -37.99 16 21 C -0.23 -12.93 9.93 84.03 0.83 -12.09 16 22 H 0.07 3.80 7.83 -2.91 -0.02 3.78 16 23 C -0.08 -4.61 5.50 84.86 0.47 -4.14 16 24 N -0.97 -62.06 13.06 21.65 0.28 -61.78 16 25 Si 0.96 49.11 29.55 68.60 2.03 51.13 16 26 H -0.27 -13.12 7.11 99.48 0.71 -12.41 16 27 H -0.30 -15.32 7.11 99.48 0.71 -14.61 16 28 H -0.29 -14.86 7.11 99.48 0.71 -14.16 16 29 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.03 1.05 8.14 -2.38 -0.02 1.03 16 31 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.41 8.92 7.75 -92.70 -0.72 8.21 16 38 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.08 0.62 7.07 -2.39 -0.02 0.60 16 44 H 0.03 0.99 7.95 -2.39 -0.02 0.97 16 45 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 47 H 0.22 1.84 7.23 -2.91 -0.02 1.82 16 48 H 0.37 20.19 7.80 -92.71 -0.72 19.46 16 49 H 0.25 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -83.43 412.20 2.33 -81.10 By element: Atomic # 1 Polarization: 32.45 SS G_CDS: -0.50 Total: 31.96 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: 6.98 Total: -1.59 kcal Atomic # 7 Polarization: -133.74 SS G_CDS: -4.85 Total: -138.59 kcal Atomic # 8 Polarization: -27.47 SS G_CDS: -0.07 Total: -27.54 kcal Atomic # 14 Polarization: 49.11 SS G_CDS: 2.03 Total: 51.13 kcal Atomic # 16 Polarization: 4.79 SS G_CDS: -1.26 Total: 3.53 kcal Total: -83.43 2.33 -81.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134657715.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.119 kcal (2) G-P(sol) polarization free energy of solvation -83.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds