Wall clock time and date at job start Tue Mar 31 2020 22:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.47025 * 2 1 4 4 C 1.53002 * 109.46829 * 120.00562 * 2 1 3 5 5 C 1.53000 * 109.46663 * 184.99736 * 4 2 1 6 6 H 1.08998 * 109.47215 * 304.99403 * 5 4 2 7 7 C 1.53003 * 109.46738 * 184.99929 * 5 4 2 8 8 N 1.46494 * 109.47509 * 64.99906 * 5 4 2 9 9 C 1.34770 * 120.00431 * 204.99595 * 8 5 4 10 10 O 1.21682 * 119.99872 * 0.02562 * 9 8 5 11 11 C 1.46685 * 120.00384 * 179.97438 * 9 8 5 12 12 S 1.76211 * 126.12984 * 353.84929 * 11 9 8 13 13 C 1.70949 * 90.31658 * 179.91696 * 12 11 9 14 14 N 1.29433 * 110.38890 * 0.34480 * 13 12 11 15 15 C 1.30939 * 117.36524 * 359.72438 * 14 13 12 16 16 C 1.50703 * 122.90648 * 179.97438 * 15 14 13 17 17 C 1.53001 * 109.47037 * 242.96083 * 16 15 14 18 18 C 1.53001 * 109.46882 * 2.96318 * 16 15 14 19 19 C 1.53002 * 109.46834 * 122.95975 * 16 15 14 20 20 N 1.46498 * 109.46776 * 240.00114 * 2 1 3 21 21 C 1.36940 * 119.99983 * 85.00553 * 20 2 1 22 22 H 1.08002 * 120.00034 * 359.97438 * 21 20 2 23 23 C 1.38806 * 120.00091 * 180.02562 * 21 20 2 24 24 N 1.31625 * 120.00255 * 179.72332 * 23 21 20 25 25 Si 1.86807 * 119.99939 * 359.97438 * 23 21 20 26 26 H 1.48502 * 109.46845 * 269.72620 * 25 23 21 27 27 H 1.48492 * 109.47160 * 29.72630 * 25 23 21 28 28 H 1.48501 * 109.47013 * 149.72992 * 25 23 21 29 29 H 1.08993 * 109.47670 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46991 * 299.99905 * 1 2 3 31 31 H 1.09001 * 109.47053 * 59.99121 * 1 2 3 32 32 H 1.08997 * 109.47070 * 304.99663 * 4 2 1 33 33 H 1.08996 * 109.47104 * 65.00053 * 4 2 1 34 34 H 1.08998 * 109.47271 * 300.00020 * 7 5 4 35 35 H 1.09001 * 109.47412 * 60.00128 * 7 5 4 36 36 H 1.08997 * 109.47064 * 180.02562 * 7 5 4 37 37 H 0.97007 * 119.99909 * 24.99540 * 8 5 4 38 38 H 1.07997 * 124.80792 * 180.02562 * 13 12 11 39 39 H 1.08992 * 109.47018 * 76.67605 * 17 16 15 40 40 H 1.09000 * 109.46684 * 196.67079 * 17 16 15 41 41 H 1.09003 * 109.47287 * 316.66958 * 17 16 15 42 42 H 1.08991 * 109.46827 * 60.00046 * 18 16 15 43 43 H 1.08999 * 109.46785 * 179.97438 * 18 16 15 44 44 H 1.08994 * 109.46628 * 299.99597 * 18 16 15 45 45 H 1.09004 * 109.47368 * 41.02706 * 19 16 15 46 46 H 1.09006 * 109.46800 * 161.01908 * 19 16 15 47 47 H 1.08990 * 109.47300 * 281.02341 * 19 16 15 48 48 H 0.97002 * 120.00574 * 265.00027 * 20 2 1 49 49 H 0.96993 * 120.00112 * 180.27354 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5648 -0.6135 1.3136 6 1 3.9954 -0.9925 0.3867 7 6 4.0851 -1.4386 2.4924 8 7 3.9481 0.7891 1.4924 9 6 5.1613 1.2132 1.0868 10 8 5.9382 0.4312 0.5715 11 6 5.5448 2.6178 1.2653 12 16 4.5016 3.9139 1.8458 13 6 5.7889 5.0290 1.6977 14 7 6.8496 4.4366 1.2516 15 6 6.7646 3.1529 1.0078 16 6 7.9214 2.3402 0.4857 17 6 7.5702 1.7815 -0.8946 18 6 9.1611 3.2301 0.3755 19 6 8.2072 1.1842 1.4464 20 7 2.0183 -0.6906 -1.1962 21 6 2.1492 -0.0074 -2.3758 22 1 1.8920 1.0404 -2.4243 23 6 2.6113 -0.6618 -3.5093 24 7 2.7319 -0.0065 -4.6444 25 14 3.0553 -2.4744 -3.4255 26 1 4.4899 -2.6166 -3.0688 27 1 2.2204 -3.1415 -2.3945 28 1 2.8089 -3.1060 -4.7467 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5140 -0.8899 32 1 1.6054 -0.2619 2.1369 33 1 1.7516 -1.7716 1.2054 34 1 3.6546 -1.0597 3.4192 35 1 3.8000 -2.4822 2.3593 36 1 5.1714 -1.3614 2.5385 37 1 3.3286 1.4126 1.9028 38 1 5.7245 6.0801 1.9373 39 1 7.6566 2.5724 -1.6395 40 1 8.2557 0.9714 -1.1437 41 1 6.5483 1.4023 -0.8839 42 1 9.4111 3.6281 1.3589 43 1 9.9979 2.6423 -0.0017 44 1 8.9574 4.0536 -0.3088 45 1 7.2655 0.7548 1.7886 46 1 8.7893 0.4196 0.9317 47 1 8.7703 1.5544 2.3030 48 1 2.2490 -1.6318 -1.1528 49 1 3.0510 -0.4648 -5.4374 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135648883.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:27 Heat of formation + Delta-G solvation = 21.036955 kcal Electronic energy + Delta-G solvation = -29076.605539 eV Core-core repulsion = 25359.193950 eV Total energy + Delta-G solvation = -3717.411589 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.84598 -39.24636 -37.11108 -35.84950 -34.55678 -32.25800 -31.35677 -29.79586 -29.19652 -27.22049 -26.93709 -26.46970 -25.72270 -23.35948 -22.62415 -21.25717 -20.75332 -19.87260 -19.12645 -17.71557 -17.61055 -16.74058 -16.10570 -15.42717 -15.13200 -14.77027 -14.59840 -14.54190 -14.21557 -14.02908 -13.65146 -13.46980 -13.26149 -13.03016 -12.67770 -12.43556 -12.23807 -12.19399 -12.00535 -11.97123 -11.77550 -11.69254 -11.40076 -11.03118 -10.91438 -10.86976 -10.73431 -10.72514 -10.63094 -10.53399 -10.28470 -9.96264 -9.84681 -9.56903 -9.54664 -9.46576 -8.92733 -8.89566 -8.74079 -7.23177 -5.72487 -3.07646 0.21038 1.11760 1.48395 2.46322 3.21510 3.31217 3.40591 3.44481 3.49806 4.01452 4.63678 4.72710 4.86680 4.90236 5.05194 5.20731 5.21571 5.26686 5.35377 5.39935 5.49329 5.57359 5.72760 5.76481 5.81690 5.84143 5.89712 5.94474 5.96898 6.05770 6.14873 6.17714 6.20348 6.26381 6.28636 6.29692 6.40365 6.43817 6.47926 6.58797 6.67106 6.78260 6.92767 6.97026 7.49148 7.63241 8.02241 8.33155 8.46050 9.24541 9.97401 10.16330 11.46016 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010733 B = 0.004388 C = 0.003932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2608.174873 B = 6379.858796 C = 7119.449979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.177 3.823 3 H 0.053 0.947 4 C -0.136 4.136 5 C 0.145 3.855 6 H 0.103 0.897 7 C -0.162 4.162 8 N -0.710 5.710 9 C 0.591 3.409 10 O -0.496 6.496 11 C -0.281 4.281 12 S 0.154 5.846 13 C 0.030 3.970 14 N -0.468 5.468 15 C 0.154 3.846 16 C 0.010 3.990 17 C -0.144 4.144 18 C -0.128 4.128 19 C -0.141 4.141 20 N -0.745 5.745 21 C -0.238 4.238 22 H 0.087 0.913 23 C 0.007 3.993 24 N -0.934 5.934 25 Si 0.880 3.120 26 H -0.282 1.282 27 H -0.278 1.278 28 H -0.293 1.293 29 H 0.045 0.955 30 H 0.037 0.963 31 H 0.057 0.943 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.052 0.948 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.392 0.608 38 H 0.204 0.796 39 H 0.043 0.957 40 H 0.060 0.940 41 H 0.090 0.910 42 H 0.053 0.947 43 H 0.054 0.946 44 H 0.058 0.942 45 H 0.081 0.919 46 H 0.061 0.939 47 H 0.040 0.960 48 H 0.360 0.640 49 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.932 6.545 19.137 20.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.067 3.933 3 H 0.071 0.929 4 C -0.174 4.174 5 C 0.041 3.959 6 H 0.121 0.879 7 C -0.221 4.221 8 N -0.361 5.361 9 C 0.377 3.623 10 O -0.374 6.374 11 C -0.405 4.405 12 S 0.409 5.591 13 C -0.266 4.266 14 N -0.181 5.181 15 C 0.017 3.983 16 C 0.007 3.993 17 C -0.201 4.201 18 C -0.185 4.185 19 C -0.199 4.199 20 N -0.388 5.388 21 C -0.368 4.368 22 H 0.105 0.895 23 C -0.189 4.189 24 N -0.582 5.582 25 Si 0.711 3.289 26 H -0.209 1.209 27 H -0.204 1.204 28 H -0.219 1.219 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.095 0.905 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.226 0.774 38 H 0.220 0.780 39 H 0.062 0.938 40 H 0.079 0.921 41 H 0.109 0.891 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.077 0.923 45 H 0.100 0.900 46 H 0.080 0.920 47 H 0.059 0.941 48 H 0.193 0.807 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.880 6.616 18.849 20.564 hybrid contribution 0.517 -1.139 -0.254 1.276 sum 5.397 5.476 18.596 20.122 Atomic orbital electron populations 1.22424 0.98963 1.00854 1.00337 1.20190 0.91807 0.95766 0.85528 0.92872 1.22235 0.93665 1.02311 0.99231 1.21055 0.95208 0.79808 0.99860 0.87876 1.22202 1.01748 1.00063 0.98043 1.45860 1.15827 1.11837 1.62535 1.16536 0.82279 0.84925 0.78604 1.90807 1.50049 1.54861 1.41637 1.25546 0.98472 0.99391 1.17134 1.83858 1.16481 1.00152 1.58582 1.28672 0.91211 1.05096 1.01618 1.66068 1.28445 1.08906 1.14642 1.20744 0.94212 0.88445 0.94941 1.19196 0.90014 0.93334 0.96722 1.22129 1.05298 0.99966 0.92695 1.21759 0.96007 0.98873 1.01889 1.22141 1.03243 0.96773 0.97693 1.42770 1.79694 1.09203 1.07139 1.18984 1.36812 0.95325 0.85708 0.89517 1.24627 1.01378 0.97301 0.95576 1.69696 1.52866 1.35519 1.00109 0.86613 0.78668 0.86978 0.76662 1.20896 1.20425 1.21922 0.93610 0.94373 0.92403 0.91516 0.90518 0.92889 0.91673 0.92245 0.77394 0.77989 0.93753 0.92137 0.89137 0.92753 0.92669 0.92336 0.90011 0.91995 0.94137 0.80749 0.93171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.72 9.49 37.16 0.35 -2.36 16 2 C 0.18 3.12 2.84 -67.93 -0.19 2.93 16 3 H 0.05 0.99 7.56 -51.93 -0.39 0.60 16 4 C -0.14 -1.85 4.29 -26.73 -0.11 -1.96 16 5 C 0.14 2.09 2.52 -67.93 -0.17 1.92 16 6 H 0.10 1.91 7.05 -51.93 -0.37 1.55 16 7 C -0.16 -1.94 9.48 37.16 0.35 -1.59 16 8 N -0.71 -9.83 4.44 -55.12 -0.24 -10.07 16 9 C 0.59 9.36 6.60 -12.85 -0.08 9.28 16 10 O -0.50 -9.06 9.66 5.20 0.05 -9.01 16 11 C -0.28 -4.01 6.06 -37.09 -0.22 -4.24 16 12 S 0.15 1.59 22.37 -107.50 -2.41 -0.82 16 13 C 0.03 0.30 12.22 51.75 0.63 0.93 16 14 N -0.47 -6.20 9.53 -11.53 -0.11 -6.31 16 15 C 0.15 2.26 5.45 -83.89 -0.46 1.80 16 16 C 0.01 0.15 0.75 -155.66 -0.12 0.03 16 17 C -0.14 -2.38 8.01 37.16 0.30 -2.09 16 18 C -0.13 -1.62 7.66 37.16 0.28 -1.34 16 19 C -0.14 -1.96 7.97 37.16 0.30 -1.67 16 20 N -0.74 -16.89 4.30 -53.42 -0.23 -17.12 16 21 C -0.24 -6.62 10.41 -15.06 -0.16 -6.78 16 22 H 0.09 2.61 8.06 -52.49 -0.42 2.19 16 23 C 0.01 0.20 5.50 -17.43 -0.10 0.11 16 24 N -0.93 -29.60 13.97 55.49 0.78 -28.83 16 25 Si 0.88 22.45 27.74 -169.99 -4.72 17.73 16 26 H -0.28 -7.29 7.11 56.52 0.40 -6.89 16 27 H -0.28 -6.60 6.51 56.52 0.37 -6.23 16 28 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 29 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.39 4.53 7.81 -40.82 -0.32 4.21 16 38 H 0.20 1.21 8.06 -52.49 -0.42 0.79 16 39 H 0.04 0.72 8.03 -51.93 -0.42 0.30 16 40 H 0.06 0.96 7.77 -51.93 -0.40 0.55 16 41 H 0.09 1.78 4.80 -51.93 -0.25 1.53 16 42 H 0.05 0.66 8.13 -51.93 -0.42 0.24 16 43 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.06 0.77 8.10 -51.93 -0.42 0.35 16 45 H 0.08 1.25 4.45 -51.93 -0.23 1.02 16 46 H 0.06 0.84 7.75 -51.93 -0.40 0.44 16 47 H 0.04 0.50 7.99 -51.93 -0.41 0.09 16 48 H 0.36 8.14 5.65 -40.82 -0.23 7.91 16 49 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 LS Contribution 394.77 15.07 5.95 5.95 Total: -1.00 -33.21 394.77 -8.42 -41.63 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: -8.09 Total: 11.88 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: 0.60 Total: -5.03 kcal Atomic # 7 Polarization: -62.52 SS G_CDS: 0.19 Total: -62.33 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: 0.05 Total: -9.01 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -4.72 Total: 17.73 kcal Atomic # 16 Polarization: 1.59 SS G_CDS: -2.41 Total: -0.82 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.21 -8.42 -41.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135648883.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.665 kcal (2) G-P(sol) polarization free energy of solvation -33.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds