Wall clock time and date at job start Tue Mar 31 2020 22:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.47025 * 2 1 4 4 C 1.53002 * 109.46829 * 120.00562 * 2 1 3 5 5 C 1.53000 * 109.46663 * 184.99736 * 4 2 1 6 6 H 1.08998 * 109.47215 * 304.99403 * 5 4 2 7 7 C 1.53003 * 109.46738 * 184.99929 * 5 4 2 8 8 N 1.46494 * 109.47509 * 64.99906 * 5 4 2 9 9 C 1.34770 * 120.00431 * 204.99595 * 8 5 4 10 10 O 1.21682 * 119.99872 * 0.02562 * 9 8 5 11 11 C 1.46685 * 120.00384 * 179.97438 * 9 8 5 12 12 S 1.76211 * 126.12984 * 353.84929 * 11 9 8 13 13 C 1.70949 * 90.31658 * 179.91696 * 12 11 9 14 14 N 1.29433 * 110.38890 * 0.34480 * 13 12 11 15 15 C 1.30939 * 117.36524 * 359.72438 * 14 13 12 16 16 C 1.50703 * 122.90648 * 179.97438 * 15 14 13 17 17 C 1.53001 * 109.47037 * 242.96083 * 16 15 14 18 18 C 1.53001 * 109.46882 * 2.96318 * 16 15 14 19 19 C 1.53002 * 109.46834 * 122.95975 * 16 15 14 20 20 N 1.46498 * 109.46776 * 240.00114 * 2 1 3 21 21 C 1.36940 * 119.99983 * 85.00553 * 20 2 1 22 22 H 1.08002 * 120.00034 * 359.97438 * 21 20 2 23 23 C 1.38806 * 120.00091 * 180.02562 * 21 20 2 24 24 N 1.31625 * 120.00255 * 179.72332 * 23 21 20 25 25 Si 1.86807 * 119.99939 * 359.97438 * 23 21 20 26 26 H 1.48502 * 109.46845 * 269.72620 * 25 23 21 27 27 H 1.48492 * 109.47160 * 29.72630 * 25 23 21 28 28 H 1.48501 * 109.47013 * 149.72992 * 25 23 21 29 29 H 1.08993 * 109.47670 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46991 * 299.99905 * 1 2 3 31 31 H 1.09001 * 109.47053 * 59.99121 * 1 2 3 32 32 H 1.08997 * 109.47070 * 304.99663 * 4 2 1 33 33 H 1.08996 * 109.47104 * 65.00053 * 4 2 1 34 34 H 1.08998 * 109.47271 * 300.00020 * 7 5 4 35 35 H 1.09001 * 109.47412 * 60.00128 * 7 5 4 36 36 H 1.08997 * 109.47064 * 180.02562 * 7 5 4 37 37 H 0.97007 * 119.99909 * 24.99540 * 8 5 4 38 38 H 1.07997 * 124.80792 * 180.02562 * 13 12 11 39 39 H 1.08992 * 109.47018 * 76.67605 * 17 16 15 40 40 H 1.09000 * 109.46684 * 196.67079 * 17 16 15 41 41 H 1.09003 * 109.47287 * 316.66958 * 17 16 15 42 42 H 1.08991 * 109.46827 * 60.00046 * 18 16 15 43 43 H 1.08999 * 109.46785 * 179.97438 * 18 16 15 44 44 H 1.08994 * 109.46628 * 299.99597 * 18 16 15 45 45 H 1.09004 * 109.47368 * 41.02706 * 19 16 15 46 46 H 1.09006 * 109.46800 * 161.01908 * 19 16 15 47 47 H 1.08990 * 109.47300 * 281.02341 * 19 16 15 48 48 H 0.97002 * 120.00574 * 265.00027 * 20 2 1 49 49 H 0.96993 * 120.00112 * 180.27354 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5648 -0.6135 1.3136 6 1 3.9954 -0.9925 0.3867 7 6 4.0851 -1.4386 2.4924 8 7 3.9481 0.7891 1.4924 9 6 5.1613 1.2132 1.0868 10 8 5.9382 0.4312 0.5715 11 6 5.5448 2.6178 1.2653 12 16 4.5016 3.9139 1.8458 13 6 5.7889 5.0290 1.6977 14 7 6.8496 4.4366 1.2516 15 6 6.7646 3.1529 1.0078 16 6 7.9214 2.3402 0.4857 17 6 7.5702 1.7815 -0.8946 18 6 9.1611 3.2301 0.3755 19 6 8.2072 1.1842 1.4464 20 7 2.0183 -0.6906 -1.1962 21 6 2.1492 -0.0074 -2.3758 22 1 1.8920 1.0404 -2.4243 23 6 2.6113 -0.6618 -3.5093 24 7 2.7319 -0.0065 -4.6444 25 14 3.0553 -2.4744 -3.4255 26 1 4.4899 -2.6166 -3.0688 27 1 2.2204 -3.1415 -2.3945 28 1 2.8089 -3.1060 -4.7467 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5140 -0.8899 32 1 1.6054 -0.2619 2.1369 33 1 1.7516 -1.7716 1.2054 34 1 3.6546 -1.0597 3.4192 35 1 3.8000 -2.4822 2.3593 36 1 5.1714 -1.3614 2.5385 37 1 3.3286 1.4126 1.9028 38 1 5.7245 6.0801 1.9373 39 1 7.6566 2.5724 -1.6395 40 1 8.2557 0.9714 -1.1437 41 1 6.5483 1.4023 -0.8839 42 1 9.4111 3.6281 1.3589 43 1 9.9979 2.6423 -0.0017 44 1 8.9574 4.0536 -0.3088 45 1 7.2655 0.7548 1.7886 46 1 8.7893 0.4196 0.9317 47 1 8.7703 1.5544 2.3030 48 1 2.2490 -1.6318 -1.1528 49 1 3.0510 -0.4648 -5.4374 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135648883.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:26 Heat of formation + Delta-G solvation = -1.363744 kcal Electronic energy + Delta-G solvation = -29077.576906 eV Core-core repulsion = 25359.193950 eV Total energy + Delta-G solvation = -3718.382956 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.90230 -40.35645 -38.45676 -37.02971 -36.01535 -34.10514 -32.67071 -31.19084 -30.60569 -28.27567 -28.19063 -27.61463 -26.70440 -25.34442 -23.72709 -22.33177 -22.00814 -21.31779 -20.24887 -19.60293 -18.75134 -17.79512 -17.28773 -16.70968 -16.54826 -16.14933 -15.82742 -15.68609 -15.52692 -15.26649 -15.18507 -14.67244 -14.51446 -14.32058 -14.16692 -14.01422 -13.47708 -13.32205 -13.20807 -13.09105 -12.99750 -12.88210 -12.81917 -12.65216 -12.40685 -12.23317 -12.00859 -11.92440 -11.89799 -11.86631 -11.80870 -11.67921 -11.41900 -10.96559 -10.82656 -10.63478 -10.52531 -9.96767 -9.79587 -9.26222 -8.00449 -5.30529 -0.73610 0.21647 0.57812 1.33004 1.39334 1.43797 1.45864 2.10540 2.20929 2.48593 3.11618 3.32997 3.65373 3.67802 3.80968 3.93671 4.00474 4.08370 4.10282 4.31516 4.34525 4.40139 4.52431 4.65924 4.75869 4.77250 4.79081 4.83126 4.85269 4.88378 4.89063 4.97098 5.00826 5.08106 5.08672 5.17123 5.21340 5.31292 5.33238 5.38640 5.46165 5.50257 5.60169 5.67027 5.80677 6.24015 6.46401 6.63514 7.12244 7.21211 7.90681 8.06637 9.21717 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010733 B = 0.004388 C = 0.003932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2608.174873 B = 6379.858796 C = 7119.449979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.167 3.833 3 H 0.040 0.960 4 C -0.123 4.123 5 C 0.144 3.856 6 H 0.056 0.944 7 C -0.152 4.152 8 N -0.703 5.703 9 C 0.583 3.417 10 O -0.530 6.530 11 C -0.319 4.319 12 S 0.211 5.789 13 C 0.041 3.959 14 N -0.493 5.493 15 C 0.144 3.856 16 C 0.007 3.993 17 C -0.137 4.137 18 C -0.119 4.119 19 C -0.133 4.133 20 N -0.747 5.747 21 C -0.211 4.211 22 H 0.052 0.948 23 C -0.066 4.066 24 N -0.987 5.987 25 Si 0.946 3.054 26 H -0.290 1.290 27 H -0.245 1.245 28 H -0.299 1.299 29 H 0.051 0.949 30 H 0.078 0.922 31 H 0.025 0.975 32 H 0.109 0.891 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.041 0.959 37 H 0.404 0.596 38 H 0.247 0.753 39 H 0.038 0.962 40 H 0.059 0.941 41 H 0.058 0.942 42 H 0.062 0.938 43 H 0.064 0.936 44 H 0.051 0.949 45 H 0.067 0.933 46 H 0.056 0.944 47 H 0.055 0.945 48 H 0.362 0.638 49 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.873 6.741 22.758 24.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.059 3.941 3 H 0.058 0.942 4 C -0.161 4.161 5 C 0.040 3.960 6 H 0.075 0.925 7 C -0.210 4.210 8 N -0.354 5.354 9 C 0.369 3.631 10 O -0.411 6.411 11 C -0.443 4.443 12 S 0.467 5.533 13 C -0.253 4.253 14 N -0.207 5.207 15 C 0.005 3.995 16 C 0.004 3.996 17 C -0.195 4.195 18 C -0.176 4.176 19 C -0.191 4.191 20 N -0.391 5.391 21 C -0.343 4.343 22 H 0.070 0.930 23 C -0.257 4.257 24 N -0.638 5.638 25 Si 0.774 3.226 26 H -0.217 1.217 27 H -0.170 1.170 28 H -0.226 1.226 29 H 0.070 0.930 30 H 0.097 0.903 31 H 0.044 0.956 32 H 0.127 0.873 33 H 0.107 0.893 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.061 0.939 37 H 0.240 0.760 38 H 0.263 0.737 39 H 0.057 0.943 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.081 0.919 43 H 0.083 0.917 44 H 0.070 0.930 45 H 0.086 0.914 46 H 0.076 0.924 47 H 0.074 0.926 48 H 0.195 0.805 49 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 3.756 6.818 22.562 23.867 hybrid contribution 0.762 -1.016 -1.305 1.821 sum 4.518 5.802 21.256 22.492 Atomic orbital electron populations 1.22288 0.97243 1.01395 1.00785 1.20496 0.92860 0.95279 0.85416 0.94188 1.22163 0.92708 1.02897 0.98321 1.20981 0.95748 0.80286 0.99017 0.92547 1.22099 1.00701 1.00335 0.97862 1.45789 1.15504 1.12015 1.62127 1.16861 0.82458 0.85578 0.78181 1.90782 1.51139 1.56053 1.43086 1.25541 0.99896 0.99883 1.19028 1.83569 1.14873 0.97863 1.57033 1.29469 0.90228 1.06748 0.98894 1.66101 1.29937 1.08288 1.16333 1.20766 0.94282 0.89219 0.95202 1.19167 0.91204 0.93922 0.95271 1.22027 1.03263 0.99710 0.94499 1.21674 0.95396 0.98360 1.02195 1.22037 1.02565 0.96490 0.97981 1.42808 1.79892 1.09296 1.07116 1.18925 1.33876 0.93999 0.87453 0.92995 1.25391 1.02897 1.01984 0.95414 1.69877 1.55529 1.37451 1.00985 0.85534 0.78168 0.81822 0.77033 1.21740 1.16955 1.22594 0.92986 0.90289 0.95612 0.87277 0.89251 0.90234 0.90540 0.93943 0.75984 0.73737 0.94273 0.92237 0.92361 0.91930 0.91731 0.93012 0.91445 0.92447 0.92618 0.80479 0.93781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.75 9.49 71.98 0.68 -4.06 16 2 C 0.17 5.62 2.84 44.99 0.13 5.75 16 3 H 0.04 1.46 7.56 -2.39 -0.02 1.44 16 4 C -0.12 -2.92 4.29 30.60 0.13 -2.79 16 5 C 0.14 3.97 2.52 44.99 0.11 4.08 16 6 H 0.06 2.12 7.05 -2.39 -0.02 2.10 16 7 C -0.15 -3.28 9.48 71.98 0.68 -2.60 16 8 N -0.70 -18.88 4.44 -446.52 -1.98 -20.86 16 9 C 0.58 18.84 6.60 86.45 0.57 19.42 16 10 O -0.53 -20.46 9.66 -4.29 -0.04 -20.50 16 11 C -0.32 -9.05 6.06 23.88 0.14 -8.91 16 12 S 0.21 3.87 22.37 -56.49 -1.26 2.61 16 13 C 0.04 0.71 12.22 130.60 1.60 2.31 16 14 N -0.49 -12.39 9.53 -190.40 -1.81 -14.21 16 15 C 0.14 4.19 5.45 42.10 0.23 4.42 16 16 C 0.01 0.21 0.75 -52.93 -0.04 0.17 16 17 C -0.14 -4.86 8.01 71.98 0.58 -4.28 16 18 C -0.12 -2.98 7.66 71.98 0.55 -2.43 16 19 C -0.13 -3.79 7.97 71.98 0.57 -3.21 16 20 N -0.75 -33.69 4.30 -322.93 -1.39 -35.07 16 21 C -0.21 -12.07 10.41 84.03 0.87 -11.20 16 22 H 0.05 3.28 8.06 -2.91 -0.02 3.26 16 23 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 24 N -0.99 -65.34 13.97 21.65 0.30 -65.04 16 25 Si 0.95 47.53 27.74 68.60 1.90 49.43 16 26 H -0.29 -14.85 7.11 99.48 0.71 -14.14 16 27 H -0.25 -10.84 6.51 99.48 0.65 -10.19 16 28 H -0.30 -15.23 7.11 99.48 0.71 -14.53 16 29 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.40 8.52 7.81 -92.70 -0.72 7.79 16 38 H 0.25 1.85 8.06 -2.91 -0.02 1.83 16 39 H 0.04 1.35 8.03 -2.39 -0.02 1.33 16 40 H 0.06 2.02 7.77 -2.39 -0.02 2.00 16 41 H 0.06 2.47 4.80 -2.39 -0.01 2.46 16 42 H 0.06 1.46 8.13 -2.39 -0.02 1.44 16 43 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.05 1.35 8.10 -2.39 -0.02 1.33 16 45 H 0.07 2.14 4.45 -2.38 -0.01 2.13 16 46 H 0.06 1.62 7.75 -2.38 -0.02 1.60 16 47 H 0.05 1.36 7.99 -2.39 -0.02 1.34 16 48 H 0.36 15.97 5.65 -92.71 -0.52 15.45 16 49 H 0.25 16.15 8.31 -92.71 -0.77 15.38 16 Total: -1.00 -78.10 394.77 2.65 -75.46 By element: Atomic # 1 Polarization: 35.41 SS G_CDS: -0.35 Total: 35.06 kcal Atomic # 6 Polarization: -14.16 SS G_CDS: 7.28 Total: -6.87 kcal Atomic # 7 Polarization: -130.30 SS G_CDS: -4.88 Total: -135.18 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: -0.04 Total: -20.50 kcal Atomic # 14 Polarization: 47.53 SS G_CDS: 1.90 Total: 49.43 kcal Atomic # 16 Polarization: 3.87 SS G_CDS: -1.26 Total: 2.61 kcal Total: -78.10 2.65 -75.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135648883.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.091 kcal (2) G-P(sol) polarization free energy of solvation -78.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds