Wall clock time and date at job start Tue Mar 31 2020 22:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.52999 * 109.46623 * 119.99792 * 2 1 3 5 5 C 1.53003 * 109.47015 * 184.99741 * 4 2 1 6 6 H 1.09000 * 109.47046 * 305.00930 * 5 4 2 7 7 C 1.52999 * 109.47319 * 184.99952 * 5 4 2 8 8 N 1.46505 * 109.47061 * 65.00264 * 5 4 2 9 9 C 1.34774 * 119.99995 * 205.00211 * 8 5 4 10 10 O 1.21622 * 120.00196 * 0.02562 * 9 8 5 11 11 C 1.47272 * 119.99674 * 179.97438 * 9 8 5 12 12 C 1.35204 * 123.13744 * 180.02562 * 11 9 8 13 13 S 1.70943 * 108.82791 * 179.97438 * 12 11 9 14 14 C 1.70773 * 91.12708 * 0.02562 * 13 12 11 15 15 C 1.50701 * 124.72348 * 180.02562 * 14 13 12 16 16 C 1.52998 * 109.47197 * 239.97696 * 15 14 13 17 17 C 1.53003 * 109.46591 * 359.97081 * 15 14 13 18 18 C 1.52996 * 109.47425 * 119.97354 * 15 14 13 19 19 N 1.28648 * 110.56157 * 359.76552 * 14 13 12 20 20 N 1.46496 * 109.46995 * 239.99855 * 2 1 3 21 21 C 1.36936 * 119.99928 * 85.00237 * 20 2 1 22 22 H 1.07993 * 120.00240 * 0.02562 * 21 20 2 23 23 C 1.38814 * 119.99737 * 179.97438 * 21 20 2 24 24 N 1.31613 * 120.00292 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 119.99784 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47150 * 90.00137 * 25 23 21 27 27 H 1.48496 * 109.46965 * 210.00072 * 25 23 21 28 28 H 1.48499 * 109.47144 * 330.00096 * 25 23 21 29 29 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 30 30 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 32 32 H 1.08994 * 109.47465 * 305.00017 * 4 2 1 33 33 H 1.08998 * 109.47565 * 65.00449 * 4 2 1 34 34 H 1.08994 * 109.47444 * 300.00344 * 7 5 4 35 35 H 1.09006 * 109.46813 * 60.00451 * 7 5 4 36 36 H 1.09000 * 109.47028 * 180.02562 * 7 5 4 37 37 H 0.97004 * 119.99767 * 24.99603 * 8 5 4 38 38 H 1.08000 * 125.59085 * 0.02562 * 12 11 9 39 39 H 1.09001 * 109.47237 * 59.99181 * 16 15 14 40 40 H 1.09003 * 109.47129 * 179.97438 * 16 15 14 41 41 H 1.09008 * 109.46662 * 299.99548 * 16 15 14 42 42 H 1.08999 * 109.47252 * 60.00472 * 17 15 14 43 43 H 1.09003 * 109.46666 * 179.97438 * 17 15 14 44 44 H 1.09002 * 109.47516 * 299.99994 * 17 15 14 45 45 H 1.08991 * 109.47358 * 59.99803 * 18 15 14 46 46 H 1.08998 * 109.47034 * 180.02562 * 18 15 14 47 47 H 1.08999 * 109.47068 * 299.99926 * 18 15 14 48 48 H 0.97003 * 119.99991 * 264.99646 * 20 2 1 49 49 H 0.97001 * 120.00319 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6134 1.3138 6 1 3.9954 -0.9922 0.3869 7 6 4.0851 -1.4383 2.4926 8 7 3.9480 0.7893 1.4926 9 6 5.1612 1.2134 1.0868 10 8 5.9378 0.4318 0.5719 11 6 5.5462 2.6236 1.2660 12 6 6.7451 3.1170 0.8825 13 16 6.8024 4.7832 1.2601 14 6 5.2237 4.7250 1.9086 15 6 4.4940 5.9042 2.4985 16 6 4.1493 5.6115 3.9601 17 6 5.3858 7.1451 2.4236 18 6 3.2063 6.1532 1.7108 19 7 4.7418 3.5355 1.8186 20 7 2.0184 -0.6906 -1.1961 21 6 2.1492 -0.0075 -2.3757 22 1 1.8928 1.0404 -2.4241 23 6 2.6124 -0.6618 -3.5089 24 7 2.9253 -1.9388 -3.4498 25 14 2.7915 0.2702 -5.1179 26 1 4.1538 0.8552 -5.2021 27 1 2.5815 -0.6610 -6.2554 28 1 1.7815 1.3574 -5.1753 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6053 -0.2617 2.1370 33 1 1.7516 -1.7715 1.2057 34 1 3.6545 -1.0594 3.4195 35 1 3.8000 -2.4820 2.3596 36 1 5.1713 -1.3611 2.5388 37 1 3.3285 1.4128 1.9029 38 1 7.5366 2.5513 0.4135 39 1 5.0667 5.4340 4.5213 40 1 3.6219 6.4646 4.3870 41 1 3.5139 4.7273 4.0135 42 1 5.6315 7.3538 1.3824 43 1 4.8579 7.9982 2.8499 44 1 6.3033 6.9677 2.9849 45 1 2.5710 5.2692 1.7641 46 1 2.6788 7.0064 2.1373 47 1 3.4519 6.3618 0.6696 48 1 2.2491 -1.6318 -1.1525 49 1 3.2486 -2.3962 -4.2418 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135680300.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:04 Heat of formation + Delta-G solvation = -7.046637 kcal Electronic energy + Delta-G solvation = -28117.637977 eV Core-core repulsion = 24399.008592 eV Total energy + Delta-G solvation = -3718.629385 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.50472 -38.94474 -37.04206 -36.47143 -34.38517 -32.08383 -30.74736 -29.98678 -28.52957 -27.77154 -27.52521 -26.29603 -25.81707 -23.60945 -23.23414 -20.82391 -19.93421 -19.61792 -19.53307 -18.34034 -17.13065 -16.45211 -15.90352 -15.49816 -15.35038 -14.71741 -14.48686 -14.42026 -14.01226 -13.87060 -13.73025 -13.51695 -13.32194 -12.89885 -12.66082 -12.59089 -12.45057 -12.08865 -12.04320 -11.97928 -11.84231 -11.81474 -11.67088 -11.52487 -11.34004 -11.26136 -10.98536 -10.77463 -10.55918 -10.35391 -10.16377 -9.89368 -9.82705 -9.70823 -9.68220 -9.55020 -8.97798 -8.81436 -8.57862 -6.85062 -5.66754 -2.94131 0.50496 1.14477 1.55691 2.06856 3.47408 3.49382 3.54008 3.55326 3.66265 3.80011 4.42155 4.56964 4.65063 4.67879 4.97706 5.15444 5.20956 5.23267 5.29978 5.30934 5.44709 5.47990 5.53912 5.57040 5.60513 5.62059 5.68046 5.74254 5.76929 5.87820 5.96594 6.00950 6.01439 6.07647 6.09698 6.21463 6.36552 6.42140 6.50910 6.64478 6.78483 6.89772 7.00423 7.15044 7.37363 7.78855 7.93446 8.51834 8.57888 9.63101 10.20973 10.55505 11.56175 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010203 B = 0.003563 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2743.747674 B = 7857.158832 C = 8467.397979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.171 3.829 3 H 0.046 0.954 4 C -0.130 4.130 5 C 0.142 3.858 6 H 0.106 0.894 7 C -0.160 4.160 8 N -0.696 5.696 9 C 0.592 3.408 10 O -0.529 6.529 11 C 0.020 3.980 12 C -0.232 4.232 13 S 0.198 5.802 14 C 0.035 3.965 15 C 0.013 3.987 16 C -0.134 4.134 17 C -0.155 4.155 18 C -0.136 4.136 19 N -0.437 5.437 20 N -0.720 5.720 21 C -0.232 4.232 22 H 0.066 0.934 23 C -0.012 4.012 24 N -0.932 5.932 25 Si 0.901 3.099 26 H -0.291 1.291 27 H -0.292 1.292 28 H -0.283 1.283 29 H 0.051 0.949 30 H 0.045 0.955 31 H 0.034 0.966 32 H 0.061 0.939 33 H 0.076 0.924 34 H 0.050 0.950 35 H 0.065 0.935 36 H 0.055 0.945 37 H 0.403 0.597 38 H 0.188 0.812 39 H 0.055 0.945 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.075 0.925 44 H 0.063 0.937 45 H 0.069 0.931 46 H 0.065 0.935 47 H 0.057 0.943 48 H 0.383 0.617 49 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.474 17.168 17.955 25.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.061 3.939 3 H 0.064 0.936 4 C -0.168 4.168 5 C 0.038 3.962 6 H 0.124 0.876 7 C -0.219 4.219 8 N -0.346 5.346 9 C 0.375 3.625 10 O -0.405 6.405 11 C -0.115 4.115 12 C -0.373 4.373 13 S 0.456 5.544 14 C -0.245 4.245 15 C 0.009 3.991 16 C -0.193 4.193 17 C -0.213 4.213 18 C -0.195 4.195 19 N -0.152 5.152 20 N -0.362 5.362 21 C -0.363 4.363 22 H 0.084 0.916 23 C -0.208 4.208 24 N -0.581 5.581 25 Si 0.733 3.267 26 H -0.219 1.219 27 H -0.218 1.218 28 H -0.209 1.209 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.237 0.763 38 H 0.205 0.795 39 H 0.074 0.926 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.083 0.917 43 H 0.094 0.906 44 H 0.082 0.918 45 H 0.088 0.912 46 H 0.084 0.916 47 H 0.076 0.924 48 H 0.216 0.784 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 5.242 17.321 17.488 25.166 hybrid contribution -0.358 -0.582 -1.046 1.249 sum 4.884 16.739 16.442 23.966 Atomic orbital electron populations 1.22443 0.99526 1.00730 0.99738 1.20227 0.91557 0.95624 0.86495 0.93571 1.22157 0.93623 1.02173 0.98895 1.21091 0.95255 0.79900 0.99920 0.87577 1.22181 1.01480 1.00167 0.98033 1.45766 1.15892 1.11685 1.61295 1.16984 0.82577 0.84625 0.78313 1.90834 1.51613 1.54636 1.43428 1.20555 0.91304 0.95916 1.03693 1.26642 1.03299 1.00142 1.07258 1.82713 1.15351 1.03926 1.52401 1.27143 0.96648 0.96841 1.03847 1.19217 0.95020 0.88729 0.96112 1.21846 1.01970 1.02622 0.92851 1.22042 0.99551 0.96879 1.02847 1.21860 0.95346 1.02652 0.99643 1.66794 1.32957 0.99872 1.15559 1.42391 1.77980 1.10527 1.05281 1.19157 1.36175 0.93612 0.87356 0.91603 1.24674 1.02325 0.95924 0.97878 1.69643 1.51122 1.08579 1.28722 0.86273 0.77736 0.78640 0.84082 1.21865 1.21820 1.20928 0.92966 0.93554 0.94715 0.92019 0.90560 0.93112 0.91629 0.92571 0.76255 0.79496 0.92559 0.91625 0.91297 0.91726 0.90602 0.91822 0.91154 0.91629 0.92353 0.78356 0.93651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.00 9.49 37.16 0.35 -2.65 16 2 C 0.17 3.42 2.84 -67.93 -0.19 3.23 16 3 H 0.05 0.97 7.56 -51.93 -0.39 0.58 16 4 C -0.13 -2.11 4.29 -26.73 -0.11 -2.23 16 5 C 0.14 2.48 2.52 -67.93 -0.17 2.31 16 6 H 0.11 2.37 7.05 -51.93 -0.37 2.00 16 7 C -0.16 -2.36 9.48 37.16 0.35 -2.00 16 8 N -0.70 -11.73 4.44 -54.93 -0.24 -11.97 16 9 C 0.59 11.12 7.76 -12.59 -0.10 11.03 16 10 O -0.53 -11.80 16.37 5.26 0.09 -11.72 16 11 C 0.02 0.32 6.70 -84.52 -0.57 -0.25 16 12 C -0.23 -3.18 10.62 29.65 0.31 -2.87 16 13 S 0.20 1.97 21.28 -107.50 -2.29 -0.32 16 14 C 0.04 0.39 5.74 -13.61 -0.08 0.31 16 15 C 0.01 0.11 0.99 -155.66 -0.15 -0.05 16 16 C -0.13 -0.99 8.45 37.16 0.31 -0.68 16 17 C -0.16 -0.92 7.53 37.16 0.28 -0.65 16 18 C -0.14 -1.15 8.45 37.16 0.31 -0.84 16 19 N -0.44 -6.04 10.10 -8.51 -0.09 -6.13 16 20 N -0.72 -18.28 4.49 -53.43 -0.24 -18.52 16 21 C -0.23 -6.63 9.93 -15.06 -0.15 -6.78 16 22 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 23 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 24 N -0.93 -29.05 13.06 55.49 0.72 -28.33 16 25 Si 0.90 23.43 29.55 -169.99 -5.02 18.40 16 26 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 27 H -0.29 -7.59 7.11 56.52 0.40 -7.18 16 28 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 29 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.40 6.03 8.12 -40.82 -0.33 5.70 16 38 H 0.19 2.49 8.03 -52.49 -0.42 2.06 16 39 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.07 0.60 8.14 -51.92 -0.42 0.17 16 42 H 0.06 0.39 7.91 -51.93 -0.41 -0.03 16 43 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.06 0.35 7.91 -51.93 -0.41 -0.07 16 45 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.38 10.35 7.80 -40.82 -0.32 10.04 16 49 H 0.25 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 413.56 15.07 6.23 6.23 Total: -1.00 -34.00 413.56 -9.07 -43.08 By element: Atomic # 1 Polarization: 20.39 SS G_CDS: -8.54 Total: 11.85 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: 0.31 Total: -2.57 kcal Atomic # 7 Polarization: -65.11 SS G_CDS: 0.15 Total: -64.95 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: 0.09 Total: -11.72 kcal Atomic # 14 Polarization: 23.43 SS G_CDS: -5.02 Total: 18.40 kcal Atomic # 16 Polarization: 1.97 SS G_CDS: -2.29 Total: -0.32 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -34.00 -9.07 -43.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135680300.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.029 kcal (2) G-P(sol) polarization free energy of solvation -34.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds