Wall clock time and date at job start Tue Mar 31 2020 22:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.52999 * 109.46623 * 119.99792 * 2 1 3 5 5 C 1.53003 * 109.47015 * 184.99741 * 4 2 1 6 6 H 1.09000 * 109.47046 * 305.00930 * 5 4 2 7 7 C 1.52999 * 109.47319 * 184.99952 * 5 4 2 8 8 N 1.46505 * 109.47061 * 65.00264 * 5 4 2 9 9 C 1.34774 * 119.99995 * 205.00211 * 8 5 4 10 10 O 1.21622 * 120.00196 * 0.02562 * 9 8 5 11 11 C 1.47272 * 119.99674 * 179.97438 * 9 8 5 12 12 C 1.35204 * 123.13744 * 180.02562 * 11 9 8 13 13 S 1.70943 * 108.82791 * 179.97438 * 12 11 9 14 14 C 1.70773 * 91.12708 * 0.02562 * 13 12 11 15 15 C 1.50701 * 124.72348 * 180.02562 * 14 13 12 16 16 C 1.52998 * 109.47197 * 239.97696 * 15 14 13 17 17 C 1.53003 * 109.46591 * 359.97081 * 15 14 13 18 18 C 1.52996 * 109.47425 * 119.97354 * 15 14 13 19 19 N 1.28648 * 110.56157 * 359.76552 * 14 13 12 20 20 N 1.46496 * 109.46995 * 239.99855 * 2 1 3 21 21 C 1.36936 * 119.99928 * 85.00237 * 20 2 1 22 22 H 1.07993 * 120.00240 * 0.02562 * 21 20 2 23 23 C 1.38814 * 119.99737 * 179.97438 * 21 20 2 24 24 N 1.31613 * 120.00292 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 119.99784 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47150 * 90.00137 * 25 23 21 27 27 H 1.48496 * 109.46965 * 210.00072 * 25 23 21 28 28 H 1.48499 * 109.47144 * 330.00096 * 25 23 21 29 29 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 30 30 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 32 32 H 1.08994 * 109.47465 * 305.00017 * 4 2 1 33 33 H 1.08998 * 109.47565 * 65.00449 * 4 2 1 34 34 H 1.08994 * 109.47444 * 300.00344 * 7 5 4 35 35 H 1.09006 * 109.46813 * 60.00451 * 7 5 4 36 36 H 1.09000 * 109.47028 * 180.02562 * 7 5 4 37 37 H 0.97004 * 119.99767 * 24.99603 * 8 5 4 38 38 H 1.08000 * 125.59085 * 0.02562 * 12 11 9 39 39 H 1.09001 * 109.47237 * 59.99181 * 16 15 14 40 40 H 1.09003 * 109.47129 * 179.97438 * 16 15 14 41 41 H 1.09008 * 109.46662 * 299.99548 * 16 15 14 42 42 H 1.08999 * 109.47252 * 60.00472 * 17 15 14 43 43 H 1.09003 * 109.46666 * 179.97438 * 17 15 14 44 44 H 1.09002 * 109.47516 * 299.99994 * 17 15 14 45 45 H 1.08991 * 109.47358 * 59.99803 * 18 15 14 46 46 H 1.08998 * 109.47034 * 180.02562 * 18 15 14 47 47 H 1.08999 * 109.47068 * 299.99926 * 18 15 14 48 48 H 0.97003 * 119.99991 * 264.99646 * 20 2 1 49 49 H 0.97001 * 120.00319 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6134 1.3138 6 1 3.9954 -0.9922 0.3869 7 6 4.0851 -1.4383 2.4926 8 7 3.9480 0.7893 1.4926 9 6 5.1612 1.2134 1.0868 10 8 5.9378 0.4318 0.5719 11 6 5.5462 2.6236 1.2660 12 6 6.7451 3.1170 0.8825 13 16 6.8024 4.7832 1.2601 14 6 5.2237 4.7250 1.9086 15 6 4.4940 5.9042 2.4985 16 6 4.1493 5.6115 3.9601 17 6 5.3858 7.1451 2.4236 18 6 3.2063 6.1532 1.7108 19 7 4.7418 3.5355 1.8186 20 7 2.0184 -0.6906 -1.1961 21 6 2.1492 -0.0075 -2.3757 22 1 1.8928 1.0404 -2.4241 23 6 2.6124 -0.6618 -3.5089 24 7 2.9253 -1.9388 -3.4498 25 14 2.7915 0.2702 -5.1179 26 1 4.1538 0.8552 -5.2021 27 1 2.5815 -0.6610 -6.2554 28 1 1.7815 1.3574 -5.1753 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6053 -0.2617 2.1370 33 1 1.7516 -1.7715 1.2057 34 1 3.6545 -1.0594 3.4195 35 1 3.8000 -2.4820 2.3596 36 1 5.1713 -1.3611 2.5388 37 1 3.3285 1.4128 1.9029 38 1 7.5366 2.5513 0.4135 39 1 5.0667 5.4340 4.5213 40 1 3.6219 6.4646 4.3870 41 1 3.5139 4.7273 4.0135 42 1 5.6315 7.3538 1.3824 43 1 4.8579 7.9982 2.8499 44 1 6.3033 6.9677 2.9849 45 1 2.5710 5.2692 1.7641 46 1 2.6788 7.0064 2.1373 47 1 3.4519 6.3618 0.6696 48 1 2.2491 -1.6318 -1.1525 49 1 3.2486 -2.3962 -4.2418 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135680300.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:03 Heat of formation + Delta-G solvation = -29.865226 kcal Electronic energy + Delta-G solvation = -28118.627465 eV Core-core repulsion = 24399.008592 eV Total energy + Delta-G solvation = -3719.618873 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.65223 -40.18402 -38.38426 -37.47379 -36.11073 -34.04380 -32.19382 -31.05566 -30.43723 -28.28268 -28.12667 -27.65499 -26.89300 -25.69226 -24.37305 -22.22466 -21.22482 -21.13732 -20.44406 -19.47126 -19.14345 -17.64785 -17.16435 -16.74854 -16.56949 -16.27766 -15.68377 -15.62235 -15.49325 -15.16217 -15.06330 -14.56692 -14.50655 -14.32204 -14.20024 -13.64667 -13.41940 -13.24492 -13.16880 -13.04306 -12.98280 -12.83960 -12.79588 -12.68997 -12.55539 -12.51251 -12.28809 -12.21101 -11.95139 -11.88464 -11.85684 -11.59196 -11.46434 -11.19641 -10.94489 -10.78424 -10.62071 -10.16292 -9.81264 -8.97354 -7.94180 -5.19746 -0.52154 0.23546 0.58788 0.93092 1.38974 1.41984 1.49104 2.19677 2.35142 2.53729 2.86460 3.39754 3.60511 3.78489 3.94521 3.98230 3.99750 4.06030 4.11627 4.19722 4.34820 4.36640 4.50313 4.64978 4.70941 4.75181 4.79165 4.80013 4.80802 4.90009 4.90150 5.00402 5.01926 5.02623 5.07059 5.09957 5.18920 5.29755 5.30482 5.38039 5.41704 5.44129 5.47758 5.58029 5.61328 6.28914 6.30675 6.64282 7.19601 7.34584 8.14076 8.35158 9.29597 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010203 B = 0.003563 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2743.747674 B = 7857.158832 C = 8467.397979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.164 3.836 3 H 0.034 0.966 4 C -0.117 4.117 5 C 0.144 3.856 6 H 0.050 0.950 7 C -0.150 4.150 8 N -0.686 5.686 9 C 0.583 3.417 10 O -0.580 6.580 11 C -0.007 4.007 12 C -0.256 4.256 13 S 0.288 5.712 14 C 0.026 3.974 15 C 0.012 3.988 16 C -0.132 4.132 17 C -0.156 4.156 18 C -0.136 4.136 19 N -0.455 5.455 20 N -0.731 5.731 21 C -0.228 4.228 22 H 0.065 0.935 23 C -0.076 4.076 24 N -0.968 5.968 25 Si 0.961 3.039 26 H -0.296 1.296 27 H -0.292 1.292 28 H -0.268 1.268 29 H 0.029 0.971 30 H 0.045 0.955 31 H 0.075 0.925 32 H 0.103 0.897 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.037 0.963 37 H 0.413 0.587 38 H 0.182 0.818 39 H 0.058 0.942 40 H 0.088 0.912 41 H 0.051 0.949 42 H 0.065 0.935 43 H 0.097 0.903 44 H 0.071 0.929 45 H 0.049 0.951 46 H 0.090 0.910 47 H 0.049 0.951 48 H 0.371 0.629 49 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.658 20.300 20.069 28.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.056 3.944 3 H 0.052 0.948 4 C -0.155 4.155 5 C 0.039 3.961 6 H 0.068 0.932 7 C -0.208 4.208 8 N -0.336 5.336 9 C 0.367 3.633 10 O -0.460 6.460 11 C -0.142 4.142 12 C -0.398 4.398 13 S 0.548 5.452 14 C -0.253 4.253 15 C 0.008 3.992 16 C -0.190 4.190 17 C -0.214 4.214 18 C -0.194 4.194 19 N -0.170 5.170 20 N -0.371 5.371 21 C -0.360 4.360 22 H 0.083 0.917 23 C -0.268 4.268 24 N -0.619 5.619 25 Si 0.791 3.209 26 H -0.224 1.224 27 H -0.218 1.218 28 H -0.193 1.193 29 H 0.048 0.952 30 H 0.065 0.935 31 H 0.094 0.906 32 H 0.122 0.878 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.056 0.944 37 H 0.250 0.750 38 H 0.200 0.800 39 H 0.077 0.923 40 H 0.107 0.893 41 H 0.070 0.930 42 H 0.084 0.916 43 H 0.116 0.884 44 H 0.090 0.910 45 H 0.068 0.932 46 H 0.108 0.892 47 H 0.068 0.932 48 H 0.203 0.797 49 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 4.375 20.519 19.654 28.748 hybrid contribution -0.093 -1.414 -1.612 2.146 sum 4.282 19.105 18.043 26.625 Atomic orbital electron populations 1.22279 0.97432 1.01021 1.00637 1.20482 0.92846 0.94901 0.86136 0.94767 1.22070 0.92487 1.02472 0.98463 1.20958 0.95956 0.80477 0.98686 0.93184 1.22075 1.00351 1.00422 0.97923 1.45710 1.15589 1.11706 1.60594 1.17512 0.82479 0.85814 0.77469 1.90789 1.53037 1.56357 1.45840 1.20268 0.92682 0.95040 1.06256 1.26904 1.02714 1.03158 1.07047 1.82329 1.13314 0.99681 1.49911 1.27871 0.97708 0.96886 1.02866 1.19437 0.95089 0.88379 0.96306 1.21839 1.02044 1.02879 0.92281 1.22089 0.99664 0.96278 1.03324 1.21863 0.95381 1.02695 0.99491 1.66775 1.33182 1.00548 1.16466 1.42571 1.78267 1.10080 1.06187 1.19469 1.34320 0.93624 0.88585 0.91694 1.25425 1.03372 0.96864 1.01155 1.69795 1.52953 1.10029 1.29134 0.85313 0.77505 0.77760 0.80337 1.22389 1.21793 1.19316 0.95196 0.93543 0.90639 0.87828 0.89946 0.90127 0.90554 0.94380 0.75027 0.80043 0.92309 0.89334 0.92997 0.91632 0.88409 0.90991 0.93218 0.89166 0.93160 0.79713 0.94286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.37 9.49 71.98 0.68 -4.69 16 2 C 0.16 6.52 2.84 44.99 0.13 6.65 16 3 H 0.03 1.44 7.56 -2.39 -0.02 1.42 16 4 C -0.12 -3.64 4.29 30.60 0.13 -3.51 16 5 C 0.14 5.11 2.52 44.99 0.11 5.22 16 6 H 0.05 2.38 7.05 -2.39 -0.02 2.36 16 7 C -0.15 -4.34 9.48 71.98 0.68 -3.66 16 8 N -0.69 -23.70 4.44 -445.94 -1.98 -25.68 16 9 C 0.58 23.09 7.76 86.62 0.67 23.76 16 10 O -0.58 -27.89 16.37 -4.10 -0.07 -27.95 16 11 C -0.01 -0.24 6.70 40.56 0.27 0.03 16 12 C -0.26 -7.15 10.62 67.12 0.71 -6.44 16 13 S 0.29 5.20 21.28 -56.49 -1.20 4.00 16 14 C 0.03 0.55 5.74 88.58 0.51 1.06 16 15 C 0.01 0.16 0.99 -52.93 -0.05 0.11 16 16 C -0.13 -1.60 8.45 71.98 0.61 -0.99 16 17 C -0.16 -1.28 7.53 71.98 0.54 -0.74 16 18 C -0.14 -2.01 8.45 71.98 0.61 -1.40 16 19 N -0.45 -12.47 10.10 -180.83 -1.83 -14.30 16 20 N -0.73 -38.12 4.49 -322.94 -1.45 -39.57 16 21 C -0.23 -13.36 9.93 84.03 0.83 -12.53 16 22 H 0.07 3.75 7.83 -2.91 -0.02 3.72 16 23 C -0.08 -4.64 5.50 84.86 0.47 -4.17 16 24 N -0.97 -62.48 13.06 21.65 0.28 -62.20 16 25 Si 0.96 49.29 29.55 68.60 2.03 51.32 16 26 H -0.30 -15.29 7.11 99.48 0.71 -14.58 16 27 H -0.29 -14.82 7.11 99.48 0.71 -14.11 16 28 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 29 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 33 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 34 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.08 2.03 8.14 -2.38 -0.02 2.02 16 36 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.41 12.30 8.12 -92.71 -0.75 11.55 16 38 H 0.18 5.12 8.03 -2.91 -0.02 5.10 16 39 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 42 H 0.06 0.55 7.91 -2.39 -0.02 0.53 16 43 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 44 H 0.07 0.49 7.91 -2.39 -0.02 0.47 16 45 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 46 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 47 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 48 H 0.37 20.89 7.80 -92.71 -0.72 20.17 16 49 H 0.25 15.61 8.31 -92.71 -0.77 14.84 16 Total: -1.00 -78.78 413.56 2.16 -76.62 By element: Atomic # 1 Polarization: 39.58 SS G_CDS: -0.54 Total: 39.05 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: 6.91 Total: -1.29 kcal Atomic # 7 Polarization: -136.77 SS G_CDS: -4.98 Total: -141.75 kcal Atomic # 8 Polarization: -27.89 SS G_CDS: -0.07 Total: -27.95 kcal Atomic # 14 Polarization: 49.29 SS G_CDS: 2.03 Total: 51.32 kcal Atomic # 16 Polarization: 5.20 SS G_CDS: -1.20 Total: 4.00 kcal Total: -78.78 2.16 -76.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135680300.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.758 kcal (2) G-P(sol) polarization free energy of solvation -78.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds