Wall clock time and date at job start Tue Mar 31 2020 22:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47148 * 2 1 4 4 C 1.53000 * 109.47261 * 120.00457 * 2 1 3 5 5 C 1.50702 * 109.47042 * 175.33915 * 4 2 1 6 6 N 1.28644 * 124.72170 * 95.55013 * 5 4 2 7 7 C 1.33558 * 115.76578 * 179.97438 * 6 5 4 8 8 C 1.47269 * 123.13923 * 179.97438 * 7 6 5 9 9 O 1.21631 * 119.99805 * 186.50260 * 8 7 6 10 10 N 1.34775 * 120.00402 * 6.50430 * 8 7 6 11 11 C 1.46498 * 120.00583 * 184.67826 * 10 8 7 12 12 H 1.08994 * 109.47116 * 176.22044 * 11 10 8 13 13 C 1.52999 * 109.47010 * 56.22000 * 11 10 8 14 14 C 1.52998 * 109.46969 * 296.22235 * 11 10 8 15 15 C 1.53006 * 109.46920 * 294.10962 * 14 11 10 16 16 H 1.08995 * 109.47202 * 306.33809 * 15 14 11 17 17 C 1.53001 * 109.46870 * 186.34085 * 15 14 11 18 18 N 1.46496 * 109.47144 * 66.34432 * 15 14 11 19 19 C 1.36937 * 120.00141 * 207.84917 * 18 15 14 20 20 H 1.07998 * 119.99560 * 9.85400 * 19 18 15 21 21 C 1.38811 * 120.00380 * 189.86036 * 19 18 15 22 22 N 1.31615 * 120.00355 * 188.95852 * 21 19 18 23 23 Si 1.86798 * 119.99786 * 9.23298 * 21 19 18 24 24 H 1.48502 * 109.47371 * 267.43323 * 23 21 19 25 25 H 1.48506 * 109.47302 * 27.43225 * 23 21 19 26 26 H 1.48500 * 109.47488 * 147.43019 * 23 21 19 27 27 C 1.35206 * 113.72036 * 0.24383 * 7 6 5 28 28 S 1.70768 * 124.71855 * 275.54290 * 5 4 2 29 29 H 1.09007 * 109.46881 * 299.99604 * 1 2 3 30 30 H 1.08997 * 109.47421 * 59.99557 * 1 2 3 31 31 H 1.09004 * 109.47402 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46984 * 240.00356 * 2 1 3 33 33 H 1.08996 * 109.47344 * 296.04186 * 3 2 1 34 34 H 1.09001 * 109.46598 * 56.04261 * 3 2 1 35 35 H 1.09004 * 109.47113 * 176.03859 * 3 2 1 36 36 H 1.09002 * 109.47462 * 55.33532 * 4 2 1 37 37 H 1.09001 * 109.46861 * 295.33399 * 4 2 1 38 38 H 0.97006 * 119.99416 * 4.67421 * 10 8 7 39 39 H 1.09003 * 109.47382 * 300.00200 * 13 11 10 40 40 H 1.09000 * 109.47297 * 60.00396 * 13 11 10 41 41 H 1.08997 * 109.47172 * 180.02562 * 13 11 10 42 42 H 1.08994 * 109.47597 * 174.11169 * 14 11 10 43 43 H 1.09006 * 109.46976 * 54.10707 * 14 11 10 44 44 H 1.08999 * 109.47127 * 60.00162 * 17 15 14 45 45 H 1.09004 * 109.47149 * 179.97438 * 17 15 14 46 46 H 1.09000 * 109.47406 * 299.99788 * 17 15 14 47 47 H 0.97004 * 120.00396 * 27.84667 * 18 15 14 48 48 H 0.96995 * 120.00320 * 180.27469 * 22 21 19 49 49 H 1.07997 * 125.58786 * 179.75405 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5426 -0.8221 1.1927 6 7 4.3539 0.0028 1.7551 7 6 5.6535 -0.2575 1.5901 8 6 6.7212 0.5799 2.1623 9 8 7.8837 0.3602 1.8798 10 7 6.4104 1.5898 2.9990 11 6 7.4611 2.4864 3.4872 12 1 7.0137 3.2744 4.0929 13 6 8.1923 3.1109 2.2971 14 6 8.4551 1.6921 4.3368 15 6 7.7573 1.1906 5.6027 16 1 7.2910 2.0305 6.1177 17 6 8.7857 0.5338 6.5258 18 7 6.7313 0.2102 5.2389 19 6 5.6309 0.0426 6.0366 20 1 5.4372 0.7357 6.8419 21 6 4.7647 -1.0183 5.8104 22 7 3.6198 -1.0822 6.4563 23 14 5.2276 -2.3591 4.5950 24 1 4.6819 -2.0229 3.2554 25 1 6.7067 -2.4653 4.5146 26 1 4.6623 -3.6552 5.0487 27 6 5.8972 -1.3584 0.8440 28 16 4.4052 -2.0473 0.3736 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.7358 1.9355 -0.9233 34 1 1.6198 1.9763 0.8524 35 1 3.1277 1.4433 0.0710 36 1 1.6101 -1.7221 1.2919 37 1 1.7465 -0.1615 2.1372 38 1 5.4909 1.7230 3.2778 39 1 8.6397 2.3228 1.6913 40 1 7.4841 3.6767 1.6918 41 1 8.9743 3.7776 2.6604 42 1 9.2913 2.3343 4.6132 43 1 8.8242 0.8413 3.7640 44 1 9.5491 1.2631 6.7965 45 1 8.2886 0.1768 7.4278 46 1 9.2520 -0.3062 6.0109 47 1 6.8312 -0.3201 4.4329 48 1 3.0163 -1.8256 6.3012 49 1 6.8744 -1.7408 0.5886 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146807564.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:14 Heat of formation + Delta-G solvation = 3.475376 kcal Electronic energy + Delta-G solvation = -29368.191775 eV Core-core repulsion = 25650.018659 eV Total energy + Delta-G solvation = -3718.173116 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.36500 -38.90678 -36.61392 -36.14366 -34.28449 -32.20024 -31.19749 -30.47430 -28.97674 -27.69754 -27.17366 -26.24422 -25.00650 -23.20668 -22.08498 -20.63572 -20.14279 -20.02219 -19.18713 -18.22530 -17.45701 -16.72601 -15.61396 -15.41337 -15.07002 -14.84531 -14.50710 -14.27819 -14.07132 -13.87242 -13.62409 -13.52805 -13.12547 -12.94138 -12.50926 -12.39882 -12.27174 -12.19463 -11.97657 -11.92190 -11.83164 -11.75427 -11.45833 -11.18383 -11.09300 -11.01718 -10.77759 -10.76085 -10.62071 -10.47930 -10.27353 -9.86208 -9.59493 -9.53002 -9.37589 -9.31567 -8.87775 -8.65552 -8.38994 -7.11233 -5.72364 -3.04214 0.76129 1.43647 1.81373 2.32087 3.36631 3.47828 3.53176 3.65302 3.80258 4.16772 4.67282 4.76735 4.82957 4.84440 5.11053 5.26057 5.35639 5.41663 5.45994 5.47797 5.51982 5.55886 5.58303 5.61232 5.66318 5.81987 5.84590 5.87435 5.93342 5.98091 6.02115 6.05100 6.16800 6.21507 6.24893 6.26714 6.33796 6.48051 6.48859 6.58109 6.59919 6.90228 7.05627 7.13188 7.68902 8.09055 8.11726 8.47648 8.66229 9.30102 10.03171 10.26027 11.45745 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010918 B = 0.005167 C = 0.004405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2564.021041 B = 5417.638848 C = 6354.334082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.089 4.089 3 C -0.147 4.147 4 C -0.042 4.042 5 C 0.046 3.954 6 N -0.420 5.420 7 C 0.024 3.976 8 C 0.596 3.404 9 O -0.547 6.547 10 N -0.680 5.680 11 C 0.155 3.845 12 H 0.086 0.914 13 C -0.171 4.171 14 C -0.147 4.147 15 C 0.175 3.825 16 H 0.053 0.947 17 C -0.165 4.165 18 N -0.740 5.740 19 C -0.237 4.237 20 H 0.086 0.914 21 C 0.014 3.986 22 N -0.931 5.931 23 Si 0.862 3.138 24 H -0.269 1.269 25 H -0.283 1.283 26 H -0.300 1.300 27 C -0.235 4.235 28 S 0.177 5.823 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.050 0.950 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.084 0.916 37 H 0.102 0.898 38 H 0.416 0.584 39 H 0.077 0.923 40 H 0.050 0.950 41 H 0.060 0.940 42 H 0.067 0.933 43 H 0.081 0.919 44 H 0.037 0.963 45 H 0.055 0.945 46 H 0.041 0.959 47 H 0.359 0.641 48 H 0.256 0.744 49 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.078 3.969 -15.094 15.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.109 4.109 3 C -0.204 4.204 4 C -0.083 4.083 5 C -0.235 4.235 6 N -0.135 5.135 7 C -0.111 4.111 8 C 0.380 3.620 9 O -0.427 6.427 10 N -0.329 5.329 11 C 0.050 3.950 12 H 0.104 0.896 13 C -0.228 4.228 14 C -0.186 4.186 15 C 0.066 3.934 16 H 0.072 0.928 17 C -0.225 4.225 18 N -0.382 5.382 19 C -0.367 4.367 20 H 0.104 0.896 21 C -0.182 4.182 22 N -0.579 5.579 23 Si 0.692 3.308 24 H -0.195 1.195 25 H -0.209 1.209 26 H -0.227 1.227 27 C -0.377 4.377 28 S 0.434 5.566 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.103 0.897 37 H 0.120 0.880 38 H 0.253 0.747 39 H 0.096 0.904 40 H 0.069 0.931 41 H 0.079 0.921 42 H 0.085 0.915 43 H 0.099 0.901 44 H 0.056 0.944 45 H 0.074 0.926 46 H 0.060 0.940 47 H 0.191 0.809 48 H 0.065 0.935 49 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -0.911 3.482 -15.355 15.771 hybrid contribution 0.630 -0.716 -0.031 0.954 sum -0.281 2.766 -15.385 15.634 Atomic orbital electron populations 1.21826 0.94451 1.01885 1.02179 1.21114 0.95971 0.96980 0.96807 1.21842 1.01859 0.95217 1.01475 1.20418 0.84864 1.02367 1.00632 1.26904 1.01339 0.95007 1.00227 1.66909 1.00623 1.27949 1.17995 1.20445 0.90967 0.97543 1.02170 1.16986 0.86410 0.79746 0.78852 1.90703 1.18816 1.70449 1.62715 1.45639 1.12636 1.29152 1.45512 1.20915 0.88581 0.91115 0.94365 0.89604 1.22233 1.00420 1.01226 0.98969 1.22375 0.97680 1.01118 0.97466 1.20254 0.88770 0.92216 0.92176 0.92849 1.22416 0.99026 1.00028 1.01053 1.42806 1.22355 1.45718 1.27369 1.19049 0.97989 1.08604 1.11022 0.89573 1.24612 0.96706 0.98101 0.98759 1.69723 1.09884 1.32624 1.45626 0.86848 0.77993 0.83289 0.82650 1.19513 1.20866 1.22708 1.26426 1.04778 1.00933 1.05601 1.82541 0.95616 1.29639 1.48779 0.92131 0.92495 0.92574 0.91263 0.93118 0.92133 0.92234 0.89726 0.87989 0.74709 0.90424 0.93136 0.92121 0.91458 0.90081 0.94363 0.92637 0.93966 0.80880 0.93450 0.79974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.19 37.16 0.34 -0.90 16 2 C -0.09 -0.90 2.91 -90.62 -0.26 -1.17 16 3 C -0.15 -1.61 9.07 37.16 0.34 -1.28 16 4 C -0.04 -0.53 5.27 -27.88 -0.15 -0.68 16 5 C 0.05 0.70 4.85 -13.61 -0.07 0.64 16 6 N -0.42 -7.48 9.19 -8.51 -0.08 -7.55 16 7 C 0.02 0.44 5.44 -84.53 -0.46 -0.02 16 8 C 0.60 11.43 5.61 -12.59 -0.07 11.36 16 9 O -0.55 -11.13 12.92 5.25 0.07 -11.06 16 10 N -0.68 -12.17 3.64 -54.93 -0.20 -12.37 16 11 C 0.15 2.43 3.20 -67.93 -0.22 2.21 16 12 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 13 C -0.17 -2.36 9.06 37.16 0.34 -2.02 16 14 C -0.15 -2.50 4.25 -26.73 -0.11 -2.62 16 15 C 0.18 3.46 2.89 -67.93 -0.20 3.26 16 16 H 0.05 1.06 8.05 -51.93 -0.42 0.64 16 17 C -0.17 -3.12 9.51 37.16 0.35 -2.77 16 18 N -0.74 -17.55 3.49 -53.43 -0.19 -17.74 16 19 C -0.24 -6.56 10.40 -15.06 -0.16 -6.71 16 20 H 0.09 2.57 8.06 -52.49 -0.42 2.14 16 21 C 0.01 0.41 5.50 -17.43 -0.10 0.31 16 22 N -0.93 -28.76 13.97 55.49 0.78 -27.99 16 23 Si 0.86 22.29 27.17 -169.99 -4.62 17.67 16 24 H -0.27 -6.27 4.05 56.52 0.23 -6.04 16 25 H -0.28 -7.60 6.92 56.52 0.39 -7.21 16 26 H -0.30 -8.09 7.11 56.52 0.40 -7.68 16 27 C -0.24 -3.87 10.31 29.65 0.31 -3.57 16 28 S 0.18 2.43 22.54 -107.50 -2.42 0.00 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.77 6.81 -51.93 -0.35 0.42 16 36 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.10 1.44 8.14 -51.93 -0.42 1.01 16 38 H 0.42 7.82 8.39 -40.82 -0.34 7.48 16 39 H 0.08 1.24 6.06 -51.93 -0.31 0.92 16 40 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 43 H 0.08 1.58 6.16 -51.93 -0.32 1.26 16 44 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 46 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 47 H 0.36 8.79 4.14 -40.82 -0.17 8.62 16 48 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 49 H 0.18 2.77 8.04 -52.49 -0.42 2.35 16 LS Contribution 394.57 15.07 5.95 5.95 Total: -1.00 -32.22 394.57 -9.25 -41.47 By element: Atomic # 1 Polarization: 23.97 SS G_CDS: -8.42 Total: 15.55 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: -0.11 Total: -3.93 kcal Atomic # 7 Polarization: -65.96 SS G_CDS: 0.31 Total: -65.65 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.07 Total: -11.06 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.62 Total: 17.67 kcal Atomic # 16 Polarization: 2.43 SS G_CDS: -2.42 Total: 0.00 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.22 -9.25 -41.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146807564.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.949 kcal (2) G-P(sol) polarization free energy of solvation -32.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds