Wall clock time and date at job start Tue Mar 31 2020 22:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47148 * 2 1 4 4 C 1.53000 * 109.47261 * 120.00457 * 2 1 3 5 5 C 1.50702 * 109.47042 * 175.33915 * 4 2 1 6 6 N 1.28644 * 124.72170 * 95.55013 * 5 4 2 7 7 C 1.33558 * 115.76578 * 179.97438 * 6 5 4 8 8 C 1.47269 * 123.13923 * 179.97438 * 7 6 5 9 9 O 1.21631 * 119.99805 * 186.50260 * 8 7 6 10 10 N 1.34775 * 120.00402 * 6.50430 * 8 7 6 11 11 C 1.46498 * 120.00583 * 184.67826 * 10 8 7 12 12 H 1.08994 * 109.47116 * 176.22044 * 11 10 8 13 13 C 1.52999 * 109.47010 * 56.22000 * 11 10 8 14 14 C 1.52998 * 109.46969 * 296.22235 * 11 10 8 15 15 C 1.53006 * 109.46920 * 294.10962 * 14 11 10 16 16 H 1.08995 * 109.47202 * 306.33809 * 15 14 11 17 17 C 1.53001 * 109.46870 * 186.34085 * 15 14 11 18 18 N 1.46496 * 109.47144 * 66.34432 * 15 14 11 19 19 C 1.36937 * 120.00141 * 207.84917 * 18 15 14 20 20 H 1.07998 * 119.99560 * 9.85400 * 19 18 15 21 21 C 1.38811 * 120.00380 * 189.86036 * 19 18 15 22 22 N 1.31615 * 120.00355 * 188.95852 * 21 19 18 23 23 Si 1.86798 * 119.99786 * 9.23298 * 21 19 18 24 24 H 1.48502 * 109.47371 * 267.43323 * 23 21 19 25 25 H 1.48506 * 109.47302 * 27.43225 * 23 21 19 26 26 H 1.48500 * 109.47488 * 147.43019 * 23 21 19 27 27 C 1.35206 * 113.72036 * 0.24383 * 7 6 5 28 28 S 1.70768 * 124.71855 * 275.54290 * 5 4 2 29 29 H 1.09007 * 109.46881 * 299.99604 * 1 2 3 30 30 H 1.08997 * 109.47421 * 59.99557 * 1 2 3 31 31 H 1.09004 * 109.47402 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46984 * 240.00356 * 2 1 3 33 33 H 1.08996 * 109.47344 * 296.04186 * 3 2 1 34 34 H 1.09001 * 109.46598 * 56.04261 * 3 2 1 35 35 H 1.09004 * 109.47113 * 176.03859 * 3 2 1 36 36 H 1.09002 * 109.47462 * 55.33532 * 4 2 1 37 37 H 1.09001 * 109.46861 * 295.33399 * 4 2 1 38 38 H 0.97006 * 119.99416 * 4.67421 * 10 8 7 39 39 H 1.09003 * 109.47382 * 300.00200 * 13 11 10 40 40 H 1.09000 * 109.47297 * 60.00396 * 13 11 10 41 41 H 1.08997 * 109.47172 * 180.02562 * 13 11 10 42 42 H 1.08994 * 109.47597 * 174.11169 * 14 11 10 43 43 H 1.09006 * 109.46976 * 54.10707 * 14 11 10 44 44 H 1.08999 * 109.47127 * 60.00162 * 17 15 14 45 45 H 1.09004 * 109.47149 * 179.97438 * 17 15 14 46 46 H 1.09000 * 109.47406 * 299.99788 * 17 15 14 47 47 H 0.97004 * 120.00396 * 27.84667 * 18 15 14 48 48 H 0.96995 * 120.00320 * 180.27469 * 22 21 19 49 49 H 1.07997 * 125.58786 * 179.75405 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5426 -0.8221 1.1927 6 7 4.3539 0.0028 1.7551 7 6 5.6535 -0.2575 1.5901 8 6 6.7212 0.5799 2.1623 9 8 7.8837 0.3602 1.8798 10 7 6.4104 1.5898 2.9990 11 6 7.4611 2.4864 3.4872 12 1 7.0137 3.2744 4.0929 13 6 8.1923 3.1109 2.2971 14 6 8.4551 1.6921 4.3368 15 6 7.7573 1.1906 5.6027 16 1 7.2910 2.0305 6.1177 17 6 8.7857 0.5338 6.5258 18 7 6.7313 0.2102 5.2389 19 6 5.6309 0.0426 6.0366 20 1 5.4372 0.7357 6.8419 21 6 4.7647 -1.0183 5.8104 22 7 3.6198 -1.0822 6.4563 23 14 5.2276 -2.3591 4.5950 24 1 4.6819 -2.0229 3.2554 25 1 6.7067 -2.4653 4.5146 26 1 4.6623 -3.6552 5.0487 27 6 5.8972 -1.3584 0.8440 28 16 4.4052 -2.0473 0.3736 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.7358 1.9355 -0.9233 34 1 1.6198 1.9763 0.8524 35 1 3.1277 1.4433 0.0710 36 1 1.6101 -1.7221 1.2919 37 1 1.7465 -0.1615 2.1372 38 1 5.4909 1.7230 3.2778 39 1 8.6397 2.3228 1.6913 40 1 7.4841 3.6767 1.6918 41 1 8.9743 3.7776 2.6604 42 1 9.2913 2.3343 4.6132 43 1 8.8242 0.8413 3.7640 44 1 9.5491 1.2631 6.7965 45 1 8.2886 0.1768 7.4278 46 1 9.2520 -0.3062 6.0109 47 1 6.8312 -0.3201 4.4329 48 1 3.0163 -1.8256 6.3012 49 1 6.8744 -1.7408 0.5886 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001146807564.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:13 Heat of formation + Delta-G solvation = -16.661521 kcal Electronic energy + Delta-G solvation = -29369.064976 eV Core-core repulsion = 25650.018659 eV Total energy + Delta-G solvation = -3719.046318 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.68731 -40.21252 -38.04936 -37.20578 -35.89516 -34.12526 -32.58487 -31.82802 -30.71094 -28.79232 -27.95464 -27.60157 -26.26976 -25.25144 -23.31100 -21.85549 -21.67677 -21.11511 -20.50505 -19.66976 -19.37911 -18.00069 -16.89499 -16.70684 -16.58125 -16.31586 -15.98911 -15.57844 -15.50018 -15.03035 -14.93305 -14.75423 -14.65061 -14.43876 -14.13019 -14.07273 -13.39514 -13.35518 -13.18491 -13.05124 -12.97668 -12.87441 -12.73072 -12.69594 -12.55113 -12.45089 -12.17582 -12.04782 -11.96182 -11.82078 -11.74236 -11.60684 -11.42106 -10.91787 -10.79852 -10.67850 -10.57439 -10.02169 -9.74030 -9.14359 -7.98975 -5.26359 -0.48073 0.27244 0.60096 1.01492 1.28943 1.33348 1.40544 2.31641 2.45544 2.49195 3.00596 3.34576 3.69009 3.71743 3.85497 3.92673 4.00278 4.08984 4.20711 4.24470 4.31823 4.37833 4.48505 4.62745 4.67052 4.71038 4.78576 4.82372 4.85199 4.86363 4.89143 4.97776 5.01584 5.04820 5.07051 5.09877 5.12441 5.26121 5.36457 5.40865 5.45561 5.48458 5.52653 5.72416 5.85964 6.25948 6.43323 6.72671 7.14222 7.25260 7.93065 8.12799 9.22302 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010918 B = 0.005167 C = 0.004405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2564.021041 B = 5417.638848 C = 6354.334082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.082 4.082 3 C -0.144 4.144 4 C -0.044 4.044 5 C 0.027 3.973 6 N -0.446 5.446 7 C -0.004 4.004 8 C 0.590 3.410 9 O -0.566 6.566 10 N -0.682 5.682 11 C 0.147 3.853 12 H 0.102 0.898 13 C -0.159 4.159 14 C -0.136 4.136 15 C 0.166 3.834 16 H 0.055 0.945 17 C -0.159 4.159 18 N -0.740 5.740 19 C -0.214 4.214 20 H 0.060 0.940 21 C -0.039 4.039 22 N -0.972 5.972 23 Si 0.917 3.083 24 H -0.239 1.239 25 H -0.296 1.296 26 H -0.312 1.312 27 C -0.254 4.254 28 S 0.251 5.749 29 H 0.053 0.947 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.050 0.950 35 H 0.036 0.964 36 H 0.102 0.898 37 H 0.082 0.918 38 H 0.410 0.590 39 H 0.055 0.945 40 H 0.056 0.944 41 H 0.087 0.913 42 H 0.102 0.898 43 H 0.058 0.942 44 H 0.076 0.924 45 H 0.032 0.968 46 H 0.032 0.968 47 H 0.356 0.644 48 H 0.253 0.747 49 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.703 4.183 -16.952 17.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.101 4.101 3 C -0.201 4.201 4 C -0.085 4.085 5 C -0.252 4.252 6 N -0.162 5.162 7 C -0.140 4.140 8 C 0.374 3.626 9 O -0.447 6.447 10 N -0.329 5.329 11 C 0.043 3.957 12 H 0.120 0.880 13 C -0.217 4.217 14 C -0.174 4.174 15 C 0.059 3.941 16 H 0.073 0.927 17 C -0.219 4.219 18 N -0.383 5.383 19 C -0.345 4.345 20 H 0.078 0.922 21 C -0.232 4.232 22 N -0.623 5.623 23 Si 0.748 3.252 24 H -0.163 1.163 25 H -0.223 1.223 26 H -0.241 1.241 27 C -0.396 4.396 28 S 0.510 5.490 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.085 0.915 34 H 0.069 0.931 35 H 0.056 0.944 36 H 0.121 0.879 37 H 0.100 0.900 38 H 0.245 0.755 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.106 0.894 42 H 0.120 0.880 43 H 0.076 0.924 44 H 0.095 0.905 45 H 0.051 0.949 46 H 0.052 0.948 47 H 0.189 0.811 48 H 0.062 0.938 49 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -0.506 3.728 -17.234 17.640 hybrid contribution 0.550 -0.711 0.573 1.066 sum 0.044 3.017 -16.661 16.932 Atomic orbital electron populations 1.21805 0.92910 1.02765 1.02523 1.21099 0.97117 0.96003 0.95931 1.21811 1.00309 0.96132 1.01886 1.20580 0.83410 1.03446 1.01071 1.27460 1.02495 0.95341 0.99950 1.66921 1.00644 1.29211 1.19384 1.20500 0.91253 0.98532 1.03676 1.17215 0.86501 0.79984 0.78886 1.90679 1.19485 1.71080 1.63494 1.45751 1.12718 1.29253 1.45186 1.21165 0.88167 0.91029 0.95306 0.87994 1.22119 1.00902 1.00790 0.97848 1.22268 0.98599 1.00963 0.95602 1.20539 0.88302 0.91295 0.94011 0.92661 1.22314 0.99390 1.00615 0.99531 1.42834 1.22391 1.46371 1.26687 1.18979 0.98621 1.07157 1.09773 0.92221 1.25118 0.96861 1.00209 1.00971 1.69857 1.11107 1.33374 1.47959 0.85975 0.76580 0.80201 0.82481 1.16287 1.22276 1.24061 1.26761 1.06757 1.00881 1.05204 1.82199 0.92871 1.27205 1.46761 0.92819 0.91150 0.91447 0.89996 0.91487 0.93104 0.94435 0.87921 0.89983 0.75515 0.92614 0.92494 0.89412 0.87978 0.92373 0.90526 0.94886 0.94837 0.81149 0.93838 0.79238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 9.19 71.98 0.66 -1.45 16 2 C -0.08 -1.52 2.91 -10.79 -0.03 -1.55 16 3 C -0.14 -3.06 9.07 71.98 0.65 -2.40 16 4 C -0.04 -1.07 5.27 29.85 0.16 -0.91 16 5 C 0.03 0.81 4.85 88.58 0.43 1.24 16 6 N -0.45 -15.81 9.19 -180.83 -1.66 -17.48 16 7 C 0.00 -0.15 5.44 40.56 0.22 0.07 16 8 C 0.59 22.60 5.61 86.62 0.49 23.09 16 9 O -0.57 -23.00 12.92 -4.13 -0.05 -23.06 16 10 N -0.68 -24.27 3.64 -445.96 -1.62 -25.89 16 11 C 0.15 4.40 3.20 44.99 0.14 4.54 16 12 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 13 C -0.16 -4.07 9.06 71.98 0.65 -3.42 16 14 C -0.14 -4.34 4.25 30.60 0.13 -4.21 16 15 C 0.17 6.39 2.89 44.99 0.13 6.52 16 16 H 0.06 2.12 8.05 -2.39 -0.02 2.10 16 17 C -0.16 -5.78 9.51 71.98 0.68 -5.09 16 18 N -0.74 -35.19 3.49 -322.94 -1.13 -36.31 16 19 C -0.21 -12.07 10.40 84.03 0.87 -11.20 16 20 H 0.06 3.65 8.06 -2.91 -0.02 3.63 16 21 C -0.04 -2.31 5.50 84.86 0.47 -1.85 16 22 N -0.97 -61.47 13.97 21.65 0.30 -61.17 16 23 Si 0.92 47.04 27.17 68.60 1.86 48.90 16 24 H -0.24 -10.83 4.05 99.48 0.40 -10.42 16 25 H -0.30 -15.72 6.92 99.48 0.69 -15.03 16 26 H -0.31 -16.60 7.11 99.48 0.71 -15.90 16 27 C -0.25 -8.07 10.31 67.12 0.69 -7.37 16 28 S 0.25 6.35 22.54 -56.49 -1.27 5.08 16 29 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 30 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 32 H 0.08 1.33 8.14 -2.39 -0.02 1.32 16 33 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.04 0.96 6.81 -2.38 -0.02 0.94 16 36 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.41 15.60 8.39 -92.70 -0.78 14.82 16 39 H 0.05 1.71 6.06 -2.39 -0.01 1.69 16 40 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 43 H 0.06 2.19 6.16 -2.38 -0.01 2.18 16 44 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 45 H 0.03 1.32 8.14 -2.38 -0.02 1.30 16 46 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 47 H 0.36 17.48 4.14 -92.71 -0.38 17.09 16 48 H 0.25 15.43 8.31 -92.71 -0.77 14.66 16 49 H 0.19 5.57 8.04 -2.91 -0.02 5.55 16 Total: -1.00 -71.34 394.57 2.24 -69.10 By element: Atomic # 1 Polarization: 45.36 SS G_CDS: -0.54 Total: 44.82 kcal Atomic # 6 Polarization: -10.34 SS G_CDS: 6.35 Total: -3.99 kcal Atomic # 7 Polarization: -136.75 SS G_CDS: -4.11 Total: -140.86 kcal Atomic # 8 Polarization: -23.00 SS G_CDS: -0.05 Total: -23.06 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 1.86 Total: 48.90 kcal Atomic # 16 Polarization: 6.35 SS G_CDS: -1.27 Total: 5.08 kcal Total: -71.34 2.24 -69.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146807564.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.439 kcal (2) G-P(sol) polarization free energy of solvation -71.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds