Wall clock time and date at job start Tue Mar 31 2020 22:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46927 * 2 1 4 4 C 1.52997 * 109.47253 * 120.00194 * 2 1 3 5 5 C 1.50697 * 109.47065 * 174.99992 * 4 2 1 6 6 N 1.28648 * 124.71819 * 90.00305 * 5 4 2 7 7 C 1.33561 * 115.76351 * 180.02562 * 6 5 4 8 8 C 1.47274 * 123.14057 * 179.97438 * 7 6 5 9 9 O 1.21622 * 120.00312 * 179.97438 * 8 7 6 10 10 N 1.34781 * 119.99718 * 359.97438 * 8 7 6 11 11 C 1.46500 * 119.99835 * 179.97438 * 10 8 7 12 12 H 1.09000 * 109.47239 * 325.00010 * 11 10 8 13 13 C 1.53005 * 109.46961 * 85.00014 * 11 10 8 14 14 C 1.52996 * 109.47059 * 204.99719 * 11 10 8 15 15 C 1.52997 * 109.46894 * 65.00370 * 14 11 10 16 16 H 1.09000 * 109.47140 * 304.99571 * 15 14 11 17 17 C 1.53006 * 109.47164 * 184.99623 * 15 14 11 18 18 N 1.46500 * 109.47204 * 64.99698 * 15 14 11 19 19 C 1.36936 * 119.99910 * 204.99560 * 18 15 14 20 20 H 1.07996 * 119.99948 * 0.02562 * 19 18 15 21 21 C 1.38815 * 119.99722 * 180.02562 * 19 18 15 22 22 N 1.31621 * 120.00278 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99762 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47177 * 59.99872 * 23 21 19 25 25 H 1.48502 * 109.47024 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.46971 * 299.99626 * 23 21 19 27 27 C 1.35195 * 113.71970 * 0.24209 * 7 6 5 28 28 S 1.70769 * 124.72142 * 269.99693 * 5 4 2 29 29 H 1.08998 * 109.47084 * 299.99596 * 1 2 3 30 30 H 1.09000 * 109.47181 * 60.00097 * 1 2 3 31 31 H 1.09009 * 109.46972 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47084 * 240.00404 * 2 1 3 33 33 H 1.08998 * 109.47354 * 300.00430 * 3 2 1 34 34 H 1.08998 * 109.46908 * 60.00296 * 3 2 1 35 35 H 1.08999 * 109.47167 * 180.02562 * 3 2 1 36 36 H 1.09001 * 109.47193 * 54.99828 * 4 2 1 37 37 H 1.09003 * 109.47179 * 295.00032 * 4 2 1 38 38 H 0.97002 * 120.00172 * 359.97438 * 10 8 7 39 39 H 1.09000 * 109.47146 * 59.99940 * 13 11 10 40 40 H 1.09003 * 109.47291 * 180.02562 * 13 11 10 41 41 H 1.09000 * 109.46901 * 299.99944 * 13 11 10 42 42 H 1.08994 * 109.47407 * 304.99859 * 14 11 10 43 43 H 1.09001 * 109.46995 * 185.00121 * 14 11 10 44 44 H 1.09001 * 109.47002 * 59.99738 * 17 15 14 45 45 H 1.08993 * 109.46955 * 180.02562 * 17 15 14 46 46 H 1.09000 * 109.47050 * 300.00004 * 17 15 14 47 47 H 0.96997 * 120.00110 * 25.00389 * 18 15 14 48 48 H 0.96997 * 119.99556 * 179.97438 * 22 21 19 49 49 H 1.08010 * 125.59065 * 179.76129 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.8294 1.1888 6 7 4.3590 0.0456 1.6596 7 6 5.6568 -0.2311 1.5079 8 6 6.7305 0.6570 1.9847 9 8 7.8948 0.3482 1.8165 10 7 6.4229 1.8120 2.6074 11 6 7.4909 2.6952 3.0822 12 1 8.3326 2.0947 3.4273 13 6 7.9475 3.6037 1.9389 14 6 6.9685 3.5522 4.2370 15 6 6.6287 2.6523 5.4267 16 1 5.9298 1.8784 5.1090 17 6 5.9905 3.4918 6.5353 18 7 7.8535 2.0268 5.9314 19 6 7.7862 0.8399 6.6111 20 1 6.8303 0.3648 6.7747 21 6 8.9468 0.2475 7.0898 22 7 10.1118 0.8269 6.8909 23 14 8.8551 -1.3719 8.0164 24 1 8.2574 -2.4107 7.1396 25 1 10.2220 -1.7899 8.4190 26 1 8.0130 -1.2021 9.2278 27 6 5.8927 -1.3999 0.8707 28 16 4.3959 -2.1305 0.4860 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6765 1.9564 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 3.1299 1.4425 -0.0005 36 1 1.6054 -1.7198 1.2951 37 1 1.7517 -0.1584 2.1370 38 1 5.4943 2.0586 2.7412 39 1 7.1058 4.2043 1.5938 40 1 8.7425 4.2606 2.2920 41 1 8.3196 2.9932 1.1162 42 1 6.0733 4.0857 3.9175 43 1 7.7337 4.2704 4.5316 44 1 5.0792 3.9572 6.1598 45 1 5.7489 2.8507 7.3830 46 1 6.6894 4.2656 6.8530 47 1 8.7121 2.4534 5.7843 48 1 10.9226 0.4130 7.2257 49 1 6.8673 -1.8068 0.6442 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146807566.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:17 Heat of formation + Delta-G solvation = -9.823714 kcal Electronic energy + Delta-G solvation = -27848.847403 eV Core-core repulsion = 24130.097595 eV Total energy + Delta-G solvation = -3718.749808 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.46722 -38.83714 -36.87298 -36.42187 -34.38814 -32.09303 -31.33307 -30.48117 -28.52922 -28.00395 -27.39504 -26.27713 -25.20690 -23.54034 -22.05338 -20.74073 -20.42894 -19.77433 -19.61833 -18.60865 -17.13395 -16.46780 -15.91442 -15.59898 -15.45505 -14.80771 -14.61714 -14.37379 -14.11281 -13.87300 -13.74478 -13.67860 -13.28167 -12.87917 -12.66524 -12.64223 -12.46505 -12.20144 -12.10543 -12.07853 -11.86701 -11.67204 -11.53248 -11.42987 -11.23148 -11.04399 -10.98092 -10.76693 -10.55778 -10.35630 -10.18388 -9.94564 -9.83520 -9.72057 -9.71238 -9.54650 -8.97726 -8.80960 -8.58301 -6.85111 -5.66571 -2.94011 0.47871 1.12369 1.52060 2.04360 3.48348 3.49818 3.53914 3.54806 3.64892 3.87720 4.49136 4.55538 4.60044 4.67939 4.98332 5.14199 5.18063 5.22227 5.25454 5.30965 5.37875 5.47457 5.50845 5.57175 5.59386 5.63027 5.68082 5.76134 5.79519 5.89452 5.96500 5.98764 6.01141 6.09307 6.10615 6.21413 6.36461 6.41952 6.50861 6.64401 6.78288 6.89540 7.00243 7.15112 7.35589 7.78409 7.92698 8.52065 8.57093 9.63174 10.21050 10.55590 11.56260 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010611 B = 0.003325 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2638.078268 B = 8419.367649 C = 9106.237812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 C -0.148 4.148 4 C -0.039 4.039 5 C 0.030 3.970 6 N -0.436 5.436 7 C 0.019 3.981 8 C 0.592 3.408 9 O -0.529 6.529 10 N -0.696 5.696 11 C 0.142 3.858 12 H 0.106 0.894 13 C -0.160 4.160 14 C -0.130 4.130 15 C 0.171 3.829 16 H 0.046 0.954 17 C -0.164 4.164 18 N -0.720 5.720 19 C -0.232 4.232 20 H 0.066 0.934 21 C -0.013 4.013 22 N -0.932 5.932 23 Si 0.902 3.098 24 H -0.288 1.288 25 H -0.291 1.291 26 H -0.287 1.287 27 C -0.226 4.226 28 S 0.193 5.807 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.051 0.949 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.403 0.597 39 H 0.050 0.950 40 H 0.065 0.935 41 H 0.055 0.945 42 H 0.061 0.939 43 H 0.076 0.924 44 H 0.034 0.966 45 H 0.051 0.949 46 H 0.045 0.955 47 H 0.383 0.617 48 H 0.254 0.746 49 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.012 -0.130 -17.388 25.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.110 4.110 3 C -0.205 4.205 4 C -0.080 4.080 5 C -0.250 4.250 6 N -0.151 5.151 7 C -0.115 4.115 8 C 0.375 3.625 9 O -0.405 6.405 10 N -0.346 5.346 11 C 0.039 3.961 12 H 0.124 0.876 13 C -0.219 4.219 14 C -0.169 4.169 15 C 0.061 3.939 16 H 0.064 0.936 17 C -0.225 4.225 18 N -0.362 5.362 19 C -0.364 4.364 20 H 0.084 0.916 21 C -0.208 4.208 22 N -0.581 5.581 23 Si 0.734 3.266 24 H -0.215 1.215 25 H -0.217 1.217 26 H -0.214 1.214 27 C -0.368 4.368 28 S 0.450 5.550 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.104 0.896 37 H 0.115 0.885 38 H 0.238 0.762 39 H 0.069 0.931 40 H 0.084 0.916 41 H 0.074 0.926 42 H 0.080 0.920 43 H 0.094 0.906 44 H 0.053 0.947 45 H 0.070 0.930 46 H 0.064 0.936 47 H 0.216 0.784 48 H 0.064 0.936 49 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -18.663 -0.923 -17.625 25.687 hybrid contribution 0.675 -0.129 1.034 1.242 sum -17.988 -1.051 -16.591 24.494 Atomic orbital electron populations 1.21832 0.94378 1.01908 1.02275 1.21115 0.95961 0.97069 0.96850 1.21850 1.01865 0.95082 1.01699 1.20406 0.84706 1.02342 1.00564 1.27038 1.01406 0.94528 1.02039 1.66926 1.00740 1.29204 1.18275 1.20574 0.90681 0.96461 1.03827 1.16978 0.86580 0.80704 0.78248 1.90836 1.18854 1.73813 1.56985 1.45767 1.10593 1.20420 1.57838 1.21088 0.91241 0.91086 0.92732 0.87573 1.22182 1.00989 0.99576 0.99117 1.22156 1.01057 0.98228 0.95415 1.20226 0.90279 0.92857 0.90532 0.93571 1.22445 0.98813 1.00267 1.00930 1.42382 1.03145 1.24429 1.66201 1.19115 0.92783 0.97572 1.26895 0.91648 1.24682 0.95411 0.98887 1.01859 1.69637 0.97081 1.39996 1.51377 0.86336 0.76398 0.84167 0.79719 1.21456 1.21727 1.21431 1.26571 1.05209 0.99694 1.05310 1.82740 0.95161 1.23753 1.53386 0.92256 0.92338 0.92526 0.91067 0.92945 0.92219 0.92136 0.89557 0.88458 0.76237 0.93105 0.91632 0.92573 0.92016 0.90560 0.94708 0.92967 0.93556 0.78359 0.93600 0.79450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.19 37.16 0.34 -0.43 16 2 C -0.09 -0.60 2.91 -90.62 -0.26 -0.87 16 3 C -0.15 -1.18 8.99 37.16 0.33 -0.85 16 4 C -0.04 -0.30 5.26 -27.89 -0.15 -0.45 16 5 C 0.03 0.32 5.84 -13.61 -0.08 0.24 16 6 N -0.44 -5.87 9.35 -8.51 -0.08 -5.95 16 7 C 0.02 0.30 6.70 -84.53 -0.57 -0.27 16 8 C 0.59 11.00 7.76 -12.59 -0.10 10.91 16 9 O -0.53 -11.70 16.37 5.26 0.09 -11.61 16 10 N -0.70 -11.63 4.44 -54.93 -0.24 -11.87 16 11 C 0.14 2.47 2.52 -67.93 -0.17 2.30 16 12 H 0.11 2.36 7.05 -51.93 -0.37 1.99 16 13 C -0.16 -2.34 9.48 37.16 0.35 -1.99 16 14 C -0.13 -2.11 4.29 -26.73 -0.11 -2.22 16 15 C 0.17 3.41 2.84 -67.93 -0.19 3.22 16 16 H 0.05 0.97 7.56 -51.93 -0.39 0.58 16 17 C -0.16 -3.01 9.49 37.16 0.35 -2.65 16 18 N -0.72 -18.25 4.49 -53.42 -0.24 -18.49 16 19 C -0.23 -6.65 9.93 -15.06 -0.15 -6.80 16 20 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 21 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 22 N -0.93 -29.05 13.06 55.49 0.72 -28.32 16 23 Si 0.90 23.42 29.55 -169.99 -5.02 18.40 16 24 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 25 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 26 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 27 C -0.23 -3.04 10.62 29.65 0.31 -2.72 16 28 S 0.19 1.85 22.92 -107.50 -2.46 -0.61 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.25 8.14 -51.92 -0.42 -0.17 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.61 6.80 -51.93 -0.35 0.26 16 36 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.40 5.99 8.12 -40.82 -0.33 5.66 16 39 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 44 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.38 10.34 7.80 -40.82 -0.32 10.02 16 48 H 0.25 7.72 8.31 -40.82 -0.34 7.38 16 49 H 0.19 2.44 8.03 -52.48 -0.42 2.02 16 LS Contribution 414.61 15.07 6.25 6.25 Total: -1.00 -33.83 414.61 -9.67 -43.49 By element: Atomic # 1 Polarization: 20.26 SS G_CDS: -8.49 Total: 11.76 kcal Atomic # 6 Polarization: -2.86 SS G_CDS: -0.18 Total: -3.04 kcal Atomic # 7 Polarization: -64.80 SS G_CDS: 0.16 Total: -64.64 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: 0.09 Total: -11.61 kcal Atomic # 14 Polarization: 23.42 SS G_CDS: -5.02 Total: 18.40 kcal Atomic # 16 Polarization: 1.85 SS G_CDS: -2.46 Total: -0.61 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -33.83 -9.67 -43.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146807566.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.671 kcal (2) G-P(sol) polarization free energy of solvation -33.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds