Wall clock time and date at job start Tue Mar 31 2020 22:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46927 * 2 1 4 4 C 1.52997 * 109.47253 * 120.00194 * 2 1 3 5 5 C 1.50697 * 109.47065 * 174.99992 * 4 2 1 6 6 N 1.28648 * 124.71819 * 90.00305 * 5 4 2 7 7 C 1.33561 * 115.76351 * 180.02562 * 6 5 4 8 8 C 1.47274 * 123.14057 * 179.97438 * 7 6 5 9 9 O 1.21622 * 120.00312 * 179.97438 * 8 7 6 10 10 N 1.34781 * 119.99718 * 359.97438 * 8 7 6 11 11 C 1.46500 * 119.99835 * 179.97438 * 10 8 7 12 12 H 1.09000 * 109.47239 * 325.00010 * 11 10 8 13 13 C 1.53005 * 109.46961 * 85.00014 * 11 10 8 14 14 C 1.52996 * 109.47059 * 204.99719 * 11 10 8 15 15 C 1.52997 * 109.46894 * 65.00370 * 14 11 10 16 16 H 1.09000 * 109.47140 * 304.99571 * 15 14 11 17 17 C 1.53006 * 109.47164 * 184.99623 * 15 14 11 18 18 N 1.46500 * 109.47204 * 64.99698 * 15 14 11 19 19 C 1.36936 * 119.99910 * 204.99560 * 18 15 14 20 20 H 1.07996 * 119.99948 * 0.02562 * 19 18 15 21 21 C 1.38815 * 119.99722 * 180.02562 * 19 18 15 22 22 N 1.31621 * 120.00278 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99762 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47177 * 59.99872 * 23 21 19 25 25 H 1.48502 * 109.47024 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.46971 * 299.99626 * 23 21 19 27 27 C 1.35195 * 113.71970 * 0.24209 * 7 6 5 28 28 S 1.70769 * 124.72142 * 269.99693 * 5 4 2 29 29 H 1.08998 * 109.47084 * 299.99596 * 1 2 3 30 30 H 1.09000 * 109.47181 * 60.00097 * 1 2 3 31 31 H 1.09009 * 109.46972 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47084 * 240.00404 * 2 1 3 33 33 H 1.08998 * 109.47354 * 300.00430 * 3 2 1 34 34 H 1.08998 * 109.46908 * 60.00296 * 3 2 1 35 35 H 1.08999 * 109.47167 * 180.02562 * 3 2 1 36 36 H 1.09001 * 109.47193 * 54.99828 * 4 2 1 37 37 H 1.09003 * 109.47179 * 295.00032 * 4 2 1 38 38 H 0.97002 * 120.00172 * 359.97438 * 10 8 7 39 39 H 1.09000 * 109.47146 * 59.99940 * 13 11 10 40 40 H 1.09003 * 109.47291 * 180.02562 * 13 11 10 41 41 H 1.09000 * 109.46901 * 299.99944 * 13 11 10 42 42 H 1.08994 * 109.47407 * 304.99859 * 14 11 10 43 43 H 1.09001 * 109.46995 * 185.00121 * 14 11 10 44 44 H 1.09001 * 109.47002 * 59.99738 * 17 15 14 45 45 H 1.08993 * 109.46955 * 180.02562 * 17 15 14 46 46 H 1.09000 * 109.47050 * 300.00004 * 17 15 14 47 47 H 0.96997 * 120.00110 * 25.00389 * 18 15 14 48 48 H 0.96997 * 119.99556 * 179.97438 * 22 21 19 49 49 H 1.08010 * 125.59065 * 179.76129 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.8294 1.1888 6 7 4.3590 0.0456 1.6596 7 6 5.6568 -0.2311 1.5079 8 6 6.7305 0.6570 1.9847 9 8 7.8948 0.3482 1.8165 10 7 6.4229 1.8120 2.6074 11 6 7.4909 2.6952 3.0822 12 1 8.3326 2.0947 3.4273 13 6 7.9475 3.6037 1.9389 14 6 6.9685 3.5522 4.2370 15 6 6.6287 2.6523 5.4267 16 1 5.9298 1.8784 5.1090 17 6 5.9905 3.4918 6.5353 18 7 7.8535 2.0268 5.9314 19 6 7.7862 0.8399 6.6111 20 1 6.8303 0.3648 6.7747 21 6 8.9468 0.2475 7.0898 22 7 10.1118 0.8269 6.8909 23 14 8.8551 -1.3719 8.0164 24 1 8.2574 -2.4107 7.1396 25 1 10.2220 -1.7899 8.4190 26 1 8.0130 -1.2021 9.2278 27 6 5.8927 -1.3999 0.8707 28 16 4.3959 -2.1305 0.4860 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6765 1.9564 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 3.1299 1.4425 -0.0005 36 1 1.6054 -1.7198 1.2951 37 1 1.7517 -0.1584 2.1370 38 1 5.4943 2.0586 2.7412 39 1 7.1058 4.2043 1.5938 40 1 8.7425 4.2606 2.2920 41 1 8.3196 2.9932 1.1162 42 1 6.0733 4.0857 3.9175 43 1 7.7337 4.2704 4.5316 44 1 5.0792 3.9572 6.1598 45 1 5.7489 2.8507 7.3830 46 1 6.6894 4.2656 6.8530 47 1 8.7121 2.4534 5.7843 48 1 10.9226 0.4130 7.2257 49 1 6.8673 -1.8068 0.6442 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001146807566.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:16 Heat of formation + Delta-G solvation = -32.040582 kcal Electronic energy + Delta-G solvation = -27849.810799 eV Core-core repulsion = 24130.097595 eV Total energy + Delta-G solvation = -3719.713204 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.61130 -40.07327 -38.33017 -37.17770 -36.10329 -34.03864 -32.43051 -31.74915 -30.43848 -28.79505 -27.90445 -27.64437 -26.32720 -25.65424 -23.09558 -22.09578 -21.21429 -21.08922 -20.91879 -19.72273 -19.20669 -17.64131 -17.16290 -16.73340 -16.61984 -16.31649 -15.67616 -15.64039 -15.59917 -15.27043 -14.90836 -14.74766 -14.53718 -14.39022 -14.12511 -13.64001 -13.41425 -13.32448 -13.22291 -13.04050 -12.97874 -12.92822 -12.81277 -12.69150 -12.67259 -12.29407 -12.25158 -12.03659 -11.86274 -11.77500 -11.58709 -11.56125 -11.46012 -11.19901 -10.92826 -10.80945 -10.61627 -10.14240 -9.77910 -8.96831 -7.93508 -5.19132 -0.51275 0.24378 0.58273 0.93895 1.39673 1.43473 1.48889 2.21304 2.35882 2.54404 2.94444 3.40086 3.69977 3.80332 3.96584 3.98547 4.04963 4.07032 4.12894 4.21946 4.36370 4.37174 4.50817 4.64850 4.67534 4.75527 4.75582 4.80274 4.82339 4.90247 4.90583 4.98552 5.01301 5.07422 5.09453 5.16666 5.19706 5.30903 5.32636 5.38602 5.48064 5.50056 5.52534 5.58608 5.61841 6.29462 6.32120 6.65566 7.20731 7.35037 8.14701 8.35725 9.30025 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010611 B = 0.003325 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2638.078268 B = 8419.367649 C = 9106.237812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.086 4.086 3 C -0.147 4.147 4 C -0.040 4.040 5 C 0.024 3.976 6 N -0.454 5.454 7 C -0.008 4.008 8 C 0.582 3.418 9 O -0.580 6.580 10 N -0.686 5.686 11 C 0.144 3.856 12 H 0.050 0.950 13 C -0.150 4.150 14 C -0.117 4.117 15 C 0.165 3.835 16 H 0.035 0.965 17 C -0.154 4.154 18 N -0.730 5.730 19 C -0.229 4.229 20 H 0.065 0.935 21 C -0.077 4.077 22 N -0.968 5.968 23 Si 0.963 3.037 24 H -0.287 1.287 25 H -0.294 1.294 26 H -0.274 1.274 27 C -0.250 4.250 28 S 0.284 5.716 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.036 0.964 36 H 0.113 0.887 37 H 0.095 0.905 38 H 0.413 0.587 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.037 0.963 42 H 0.103 0.897 43 H 0.082 0.918 44 H 0.075 0.925 45 H 0.029 0.971 46 H 0.045 0.955 47 H 0.371 0.629 48 H 0.248 0.752 49 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.624 -0.235 -18.281 29.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.106 4.106 3 C -0.205 4.205 4 C -0.081 4.081 5 C -0.256 4.256 6 N -0.170 5.170 7 C -0.143 4.143 8 C 0.367 3.633 9 O -0.460 6.460 10 N -0.336 5.336 11 C 0.040 3.960 12 H 0.068 0.932 13 C -0.208 4.208 14 C -0.155 4.155 15 C 0.057 3.943 16 H 0.053 0.947 17 C -0.214 4.214 18 N -0.371 5.371 19 C -0.361 4.361 20 H 0.083 0.917 21 C -0.270 4.270 22 N -0.619 5.619 23 Si 0.793 3.207 24 H -0.214 1.214 25 H -0.220 1.220 26 H -0.200 1.200 27 C -0.393 4.393 28 S 0.542 5.458 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.056 0.944 36 H 0.131 0.869 37 H 0.114 0.886 38 H 0.250 0.750 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.056 0.944 42 H 0.122 0.878 43 H 0.100 0.900 44 H 0.094 0.906 45 H 0.048 0.952 46 H 0.064 0.936 47 H 0.203 0.797 48 H 0.057 0.943 49 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -22.372 -1.004 -18.522 29.062 hybrid contribution 1.656 -0.118 1.216 2.058 sum -20.716 -1.121 -17.306 27.016 Atomic orbital electron populations 1.21803 0.92899 1.02839 1.02489 1.21105 0.97056 0.95920 0.96499 1.21841 1.00314 0.96358 1.01943 1.20622 0.82448 1.04047 1.00965 1.27687 1.02703 0.94414 1.00763 1.66907 0.99877 1.30493 1.19696 1.20265 0.91069 0.96986 1.05985 1.17522 0.86817 0.81221 0.77745 1.90790 1.21069 1.75008 1.59159 1.45708 1.10941 1.19999 1.56958 1.20947 0.89866 0.90905 0.94318 0.93172 1.22077 1.02336 0.99046 0.97321 1.22069 1.02962 0.97361 0.93119 1.20479 0.88093 0.93335 0.92428 0.94714 1.22283 1.00365 0.99500 0.99255 1.42561 1.04513 1.23894 1.66105 1.19440 0.92572 0.98405 1.25677 0.91668 1.25448 0.95304 1.02352 1.03846 1.69795 0.97451 1.41505 1.53174 0.85362 0.76212 0.80361 0.78808 1.21361 1.22044 1.20045 1.26814 1.07466 0.99870 1.05124 1.82358 0.91323 1.21172 1.50929 0.92276 0.91955 0.91246 0.90569 0.92236 0.92480 0.94433 0.86891 0.88620 0.75011 0.90155 0.90594 0.94374 0.87845 0.89990 0.90636 0.95189 0.93583 0.79735 0.94292 0.80048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 9.19 71.98 0.66 -0.38 16 2 C -0.09 -0.91 2.91 -10.80 -0.03 -0.94 16 3 C -0.15 -2.12 8.99 71.98 0.65 -1.47 16 4 C -0.04 -0.49 5.26 29.85 0.16 -0.34 16 5 C 0.02 0.46 5.84 88.57 0.52 0.98 16 6 N -0.45 -12.01 9.35 -180.84 -1.69 -13.70 16 7 C -0.01 -0.25 6.70 40.56 0.27 0.02 16 8 C 0.58 22.79 7.76 86.62 0.67 23.47 16 9 O -0.58 -27.63 16.37 -4.10 -0.07 -27.70 16 10 N -0.69 -23.45 4.44 -445.94 -1.98 -25.43 16 11 C 0.14 5.09 2.52 44.99 0.11 5.21 16 12 H 0.05 2.38 7.05 -2.39 -0.02 2.36 16 13 C -0.15 -4.32 9.48 71.98 0.68 -3.64 16 14 C -0.12 -3.63 4.29 30.59 0.13 -3.50 16 15 C 0.16 6.51 2.84 44.99 0.13 6.64 16 16 H 0.03 1.46 7.56 -2.39 -0.02 1.44 16 17 C -0.15 -5.37 9.49 71.98 0.68 -4.69 16 18 N -0.73 -38.01 4.49 -322.93 -1.45 -39.46 16 19 C -0.23 -13.39 9.93 84.03 0.83 -12.56 16 20 H 0.07 3.74 7.83 -2.91 -0.02 3.72 16 21 C -0.08 -4.71 5.50 84.86 0.47 -4.25 16 22 N -0.97 -62.43 13.06 21.65 0.28 -62.14 16 23 Si 0.96 49.21 29.55 68.60 2.03 51.24 16 24 H -0.29 -14.45 7.11 99.48 0.71 -13.75 16 25 H -0.29 -15.06 7.11 99.48 0.71 -14.35 16 26 H -0.27 -13.30 7.11 99.48 0.71 -12.59 16 27 C -0.25 -6.79 10.62 67.12 0.71 -6.08 16 28 S 0.28 4.84 22.92 -56.49 -1.29 3.55 16 29 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.07 0.35 8.14 -2.38 -0.02 0.33 16 32 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.04 0.72 6.80 -2.39 -0.02 0.70 16 36 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.41 12.15 8.12 -92.71 -0.75 11.40 16 39 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 41 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 43 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 44 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 45 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 46 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 47 H 0.37 20.85 7.80 -92.71 -0.72 20.12 16 48 H 0.25 15.63 8.31 -92.71 -0.77 14.86 16 49 H 0.18 4.99 8.03 -2.91 -0.02 4.97 16 Total: -1.00 -78.14 414.61 1.94 -76.20 By element: Atomic # 1 Polarization: 39.51 SS G_CDS: -0.53 Total: 38.98 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: 6.65 Total: -1.54 kcal Atomic # 7 Polarization: -135.89 SS G_CDS: -4.84 Total: -140.73 kcal Atomic # 8 Polarization: -27.63 SS G_CDS: -0.07 Total: -27.70 kcal Atomic # 14 Polarization: 49.21 SS G_CDS: 2.03 Total: 51.24 kcal Atomic # 16 Polarization: 4.84 SS G_CDS: -1.29 Total: 3.55 kcal Total: -78.14 1.94 -76.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146807566.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.161 kcal (2) G-P(sol) polarization free energy of solvation -78.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds