Wall clock time and date at job start Tue Mar 31 2020 23:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46903 * 109.47056 * 2 1 4 4 C 1.46894 * 111.00398 * 291.73779 * 3 2 1 5 5 C 1.50708 * 109.46962 * 289.06399 * 4 3 2 6 6 O 1.21295 * 119.99789 * 354.55510 * 5 4 3 7 7 N 1.34767 * 120.00238 * 174.55927 * 5 4 3 8 8 C 1.37099 * 120.00408 * 180.02562 * 7 5 4 9 9 H 1.08006 * 119.99568 * 359.97438 * 8 7 5 10 10 C 1.38945 * 120.00435 * 179.97438 * 8 7 5 11 11 N 1.31410 * 120.00046 * 179.97438 * 10 8 7 12 12 Si 1.86803 * 119.99991 * 0.02562 * 10 8 7 13 13 H 1.48504 * 109.47121 * 89.99565 * 12 10 8 14 14 H 1.48497 * 109.46977 * 209.99577 * 12 10 8 15 15 H 1.48499 * 109.46825 * 330.00079 * 12 10 8 16 16 C 1.46906 * 110.99812 * 55.69069 * 3 2 1 17 17 H 1.09003 * 109.47020 * 291.59121 * 16 3 2 18 18 C 1.52994 * 109.47177 * 171.58849 * 16 3 2 19 19 C 1.52999 * 109.47205 * 51.58711 * 16 3 2 20 20 N 1.46496 * 109.47002 * 55.92609 * 19 16 3 21 21 C 1.34780 * 120.00034 * 174.91187 * 20 19 16 22 22 O 1.21284 * 119.99942 * 359.97438 * 21 20 19 23 23 C 1.50693 * 120.00146 * 179.72759 * 21 20 19 24 24 N 1.46502 * 109.47316 * 180.27180 * 23 21 20 25 25 C 1.34597 * 126.43576 * 124.99790 * 24 23 21 26 26 N 1.31071 * 106.67790 * 180.02562 * 25 24 23 27 27 N 1.28841 * 107.99415 * 0.02562 * 26 25 24 28 28 N 1.28741 * 109.39134 * 359.73334 * 27 26 25 29 29 H 1.08999 * 109.47221 * 302.19252 * 1 2 3 30 30 H 1.08999 * 109.47121 * 62.18977 * 1 2 3 31 31 H 1.08998 * 109.47304 * 182.18860 * 1 2 3 32 32 H 1.09002 * 109.46846 * 240.00567 * 2 1 3 33 33 H 1.08995 * 109.47233 * 120.00191 * 2 1 3 34 34 H 1.09000 * 109.47453 * 49.05932 * 4 3 2 35 35 H 1.08997 * 109.47473 * 169.06765 * 4 3 2 36 36 H 0.97006 * 120.00100 * 359.97438 * 7 5 4 37 37 H 0.97002 * 120.00053 * 179.97438 * 11 10 8 38 38 H 1.08999 * 109.47150 * 60.00041 * 18 16 3 39 39 H 1.09003 * 109.47360 * 179.97438 * 18 16 3 40 40 H 1.08994 * 109.47308 * 299.99801 * 18 16 3 41 41 H 1.09006 * 109.47148 * 295.92687 * 19 16 3 42 42 H 1.09003 * 109.47198 * 175.93084 * 19 16 3 43 43 H 0.96996 * 120.00111 * 354.91194 * 20 19 16 44 44 H 1.08997 * 109.47459 * 300.27445 * 23 21 20 45 45 H 1.09003 * 109.47252 * 60.27715 * 23 21 20 46 46 H 1.07999 * 126.66559 * 0.03854 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7163 2.0507 -1.2738 5 6 2.5862 1.4746 -2.3613 6 8 3.4483 0.6675 -2.0845 7 7 2.4063 1.8562 -3.6412 8 6 3.1973 1.3318 -4.6306 9 1 3.9649 0.6130 -4.3842 10 6 3.0115 1.7248 -5.9503 11 7 3.7700 1.2224 -6.8985 12 14 1.6844 2.9685 -6.3765 13 1 2.2506 4.3396 -6.3083 14 1 1.1840 2.7073 -7.7500 15 1 0.5637 2.8472 -5.4098 16 6 1.4663 2.1390 1.1329 17 1 0.3955 2.2812 0.9864 18 6 2.1542 3.5026 1.2227 19 6 1.7048 1.3611 2.4285 20 7 3.1360 1.0854 2.5761 21 6 3.5969 0.4980 3.6982 22 8 2.8269 0.1981 4.5860 23 6 5.0683 0.2088 3.8475 24 7 5.3110 -0.4328 5.1420 25 6 5.9316 -1.6095 5.3471 26 7 5.9358 -1.8118 6.6421 27 7 5.3480 -0.8119 7.2030 28 7 4.9739 0.0257 6.2998 29 1 -0.3633 0.5475 0.8697 30 1 -0.3633 0.4794 -0.9090 31 1 -0.3634 -1.0269 0.0392 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5138 0.8899 34 1 0.6676 1.8928 -1.5256 35 1 1.9108 3.1191 -1.1808 36 1 1.7167 2.5015 -3.8627 37 1 3.6401 1.4965 -7.8199 38 1 1.9843 4.0568 0.2997 39 1 1.7433 4.0623 2.0630 40 1 3.2249 3.3604 1.3693 41 1 1.1552 0.4203 2.3939 42 1 1.3593 1.9526 3.2764 43 1 3.7519 1.3255 1.8663 44 1 5.3911 -0.4559 3.0463 45 1 5.6293 1.1418 3.7937 46 1 6.3459 -2.2604 4.5914 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001151813453.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:53 Heat of formation + Delta-G solvation = 75.466135 kcal Electronic energy + Delta-G solvation = -29753.883680 eV Core-core repulsion = 25524.831854 eV Total energy + Delta-G solvation = -4229.051826 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.181 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.38483 -40.41073 -39.29167 -37.72658 -35.73229 -34.82611 -33.97809 -32.67826 -32.11597 -31.76995 -30.46775 -29.33968 -27.13091 -26.29818 -24.17654 -24.05919 -23.70424 -22.81157 -21.08511 -19.94683 -19.26192 -18.26314 -18.16659 -18.07134 -16.88696 -16.77077 -16.30413 -16.00537 -15.95174 -15.52919 -15.17215 -14.99655 -14.47096 -14.17013 -13.92706 -13.69719 -13.44195 -13.22749 -13.07414 -12.92687 -12.59943 -12.54009 -12.46746 -12.35086 -12.05387 -11.80534 -11.78957 -11.55950 -11.44053 -11.36035 -11.29533 -10.83130 -10.67647 -10.65915 -10.64372 -10.24321 -10.06733 -9.63193 -9.38687 -8.71971 -8.27134 -8.15348 -6.39807 -3.91531 0.99185 1.53109 2.06638 2.09618 2.72285 2.94106 2.98770 3.08047 3.63775 3.65519 3.84519 3.96574 4.01796 4.19986 4.34578 4.43155 4.54018 4.63081 4.76462 4.96514 5.08766 5.14387 5.16016 5.20120 5.29319 5.34809 5.37781 5.42949 5.46112 5.53830 5.63973 5.72122 5.77305 5.80119 5.88625 6.02078 6.05239 6.06245 6.29901 6.95163 7.08360 7.10925 7.49146 7.75590 8.04979 8.39388 8.50917 8.86294 9.33514 9.73783 10.73174 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.019046 B = 0.002272 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.764995 B =12323.589538 C =13049.871617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.047 3.953 3 N -0.507 5.507 4 C 0.035 3.965 5 C 0.454 3.546 6 O -0.560 6.560 7 N -0.592 5.592 8 C -0.305 4.305 9 H 0.120 0.880 10 C 0.042 3.958 11 N -0.880 5.880 12 Si 0.879 3.121 13 H -0.271 1.271 14 H -0.277 1.277 15 H -0.270 1.270 16 C 0.061 3.939 17 H 0.061 0.939 18 C -0.148 4.148 19 C 0.129 3.871 20 N -0.704 5.704 21 C 0.500 3.500 22 O -0.520 6.520 23 C 0.094 3.906 24 N -0.299 5.299 25 C 0.162 3.838 26 N -0.308 5.308 27 N -0.081 5.081 28 N -0.064 5.064 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.094 0.906 33 H 0.073 0.927 34 H 0.053 0.947 35 H 0.093 0.907 36 H 0.369 0.631 37 H 0.274 0.726 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.065 0.935 41 H 0.072 0.928 42 H 0.076 0.924 43 H 0.417 0.583 44 H 0.147 0.853 45 H 0.137 0.863 46 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.683 2.614 15.759 16.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.081 4.081 3 N -0.231 5.231 4 C -0.096 4.096 5 C 0.239 3.761 6 O -0.442 6.442 7 N -0.231 5.231 8 C -0.433 4.433 9 H 0.137 0.863 10 C -0.162 4.162 11 N -0.520 5.520 12 Si 0.705 3.295 13 H -0.196 1.196 14 H -0.202 1.202 15 H -0.196 1.196 16 C -0.048 4.048 17 H 0.079 0.921 18 C -0.205 4.205 19 C 0.005 3.995 20 N -0.358 5.358 21 C 0.283 3.717 22 O -0.395 6.395 23 C -0.032 4.032 24 N -0.101 5.101 25 C -0.137 4.137 26 N -0.156 5.156 27 N -0.076 5.076 28 N -0.051 5.051 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.112 0.888 33 H 0.091 0.909 34 H 0.071 0.929 35 H 0.111 0.889 36 H 0.202 0.798 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.090 0.910 42 H 0.094 0.906 43 H 0.254 0.746 44 H 0.165 0.835 45 H 0.154 0.846 46 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -2.369 2.154 17.754 18.041 hybrid contribution -1.562 0.972 -2.342 2.978 sum -3.931 3.127 15.412 16.210 Atomic orbital electron populations 1.22492 0.98792 1.02458 1.01658 1.22266 0.92015 0.89729 1.04068 1.61868 1.58467 1.01944 1.00837 1.22015 0.98141 0.99575 0.89919 1.19598 0.87466 0.86239 0.82792 1.90538 1.35817 1.35974 1.81862 1.42232 1.33422 1.40762 1.06700 1.19394 1.14636 1.23992 0.85316 0.86287 1.25040 0.97689 0.97939 0.95484 1.69615 1.38519 1.42963 1.00920 0.86688 0.81723 0.82040 0.79001 1.19602 1.20185 1.19604 1.21969 0.98232 0.94211 0.90342 0.92104 1.21902 1.01557 0.94979 1.02069 1.21489 0.80972 1.00181 0.96840 1.45745 1.10149 1.61008 1.18896 1.20092 0.89353 0.79197 0.83103 1.90846 1.57298 1.51264 1.40133 1.22037 0.97436 1.02687 0.81025 1.48153 1.37802 1.16087 1.08039 1.27780 0.99467 0.89278 0.97187 1.74991 1.17535 1.19259 1.03790 1.78668 1.10397 0.97170 1.21319 1.78995 1.16567 1.22127 0.87409 0.92735 0.92408 0.92063 0.88769 0.90885 0.92938 0.88894 0.79805 0.91570 0.91864 0.92069 0.91599 0.91021 0.90584 0.74577 0.83483 0.84551 0.74767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.03 9.00 37.16 0.33 -1.70 16 2 C 0.05 0.57 5.19 -3.82 -0.02 0.55 16 3 N -0.51 -5.90 3.61 -228.08 -0.82 -6.72 16 4 C 0.03 0.47 5.22 -4.98 -0.03 0.45 16 5 C 0.45 8.98 7.32 -10.99 -0.08 8.90 16 6 O -0.56 -13.07 14.65 5.54 0.08 -12.99 16 7 N -0.59 -12.84 5.09 -10.96 -0.06 -12.90 16 8 C -0.30 -8.05 10.16 -14.93 -0.15 -8.20 16 9 H 0.12 3.61 7.39 -52.48 -0.39 3.23 16 10 C 0.04 1.08 5.50 -17.47 -0.10 0.99 16 11 N -0.88 -24.63 13.96 55.50 0.77 -23.86 16 12 Si 0.88 18.34 27.74 -169.99 -4.72 13.63 16 13 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 14 H -0.28 -5.86 7.11 56.52 0.40 -5.45 16 15 H -0.27 -5.11 6.52 56.52 0.37 -4.74 16 16 C 0.06 0.53 1.68 -67.71 -0.11 0.41 16 17 H 0.06 0.50 6.69 -51.93 -0.35 0.16 16 18 C -0.15 -1.14 8.99 37.15 0.33 -0.81 16 19 C 0.13 1.11 4.41 -4.04 -0.02 1.09 16 20 N -0.70 -5.54 4.89 -60.30 -0.29 -5.84 16 21 C 0.50 4.50 7.85 -10.99 -0.09 4.42 16 22 O -0.52 -7.19 15.70 5.55 0.09 -7.10 16 23 C 0.09 0.50 6.96 -5.20 -0.04 0.47 16 24 N -0.30 -2.73 3.19 -63.74 -0.20 -2.93 16 25 C 0.16 1.30 12.79 -90.39 -1.16 0.15 16 26 N -0.31 -3.81 12.36 29.59 0.37 -3.44 16 27 N -0.08 -1.18 13.43 60.35 0.81 -0.36 16 28 N -0.06 -0.85 12.30 60.35 0.74 -0.11 16 29 H 0.05 0.49 5.75 -51.93 -0.30 0.19 16 30 H 0.06 0.64 6.52 -51.93 -0.34 0.30 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.09 1.50 6.44 -51.93 -0.33 1.16 16 33 H 0.07 0.82 6.41 -51.93 -0.33 0.49 16 34 H 0.05 0.66 6.21 -51.93 -0.32 0.34 16 35 H 0.09 1.10 5.87 -51.93 -0.30 0.80 16 36 H 0.37 7.07 5.76 -40.82 -0.24 6.83 16 37 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 38 H 0.06 0.51 6.24 -51.93 -0.32 0.19 16 39 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 0.52 7.23 -51.93 -0.38 0.14 16 41 H 0.07 0.69 5.93 -51.93 -0.31 0.38 16 42 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.42 2.99 7.39 -40.82 -0.30 2.68 16 44 H 0.15 0.24 8.08 -51.93 -0.42 -0.18 16 45 H 0.14 0.39 8.14 -51.93 -0.42 -0.04 16 46 H 0.24 0.57 8.06 -52.49 -0.42 0.15 16 LS Contribution 373.56 15.07 5.63 5.63 Total: -1.00 -37.00 373.56 -4.63 -41.63 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -5.91 Total: 8.65 kcal Atomic # 6 Polarization: 7.83 SS G_CDS: -1.12 Total: 6.72 kcal Atomic # 7 Polarization: -57.48 SS G_CDS: 1.32 Total: -56.16 kcal Atomic # 8 Polarization: -20.26 SS G_CDS: 0.17 Total: -20.09 kcal Atomic # 14 Polarization: 18.34 SS G_CDS: -4.72 Total: 13.63 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -37.00 -4.63 -41.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151813453.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.092 kcal (2) G-P(sol) polarization free energy of solvation -36.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds