Wall clock time and date at job start Tue Mar 31 2020 23:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46903 * 109.47056 * 2 1 4 4 C 1.46894 * 111.00398 * 291.73779 * 3 2 1 5 5 C 1.50708 * 109.46962 * 289.06399 * 4 3 2 6 6 O 1.21295 * 119.99789 * 354.55510 * 5 4 3 7 7 N 1.34767 * 120.00238 * 174.55927 * 5 4 3 8 8 C 1.37099 * 120.00408 * 180.02562 * 7 5 4 9 9 H 1.08006 * 119.99568 * 359.97438 * 8 7 5 10 10 C 1.38945 * 120.00435 * 179.97438 * 8 7 5 11 11 N 1.31410 * 120.00046 * 179.97438 * 10 8 7 12 12 Si 1.86803 * 119.99991 * 0.02562 * 10 8 7 13 13 H 1.48504 * 109.47121 * 89.99565 * 12 10 8 14 14 H 1.48497 * 109.46977 * 209.99577 * 12 10 8 15 15 H 1.48499 * 109.46825 * 330.00079 * 12 10 8 16 16 C 1.46906 * 110.99812 * 55.69069 * 3 2 1 17 17 H 1.09003 * 109.47020 * 291.59121 * 16 3 2 18 18 C 1.52994 * 109.47177 * 171.58849 * 16 3 2 19 19 C 1.52999 * 109.47205 * 51.58711 * 16 3 2 20 20 N 1.46496 * 109.47002 * 55.92609 * 19 16 3 21 21 C 1.34780 * 120.00034 * 174.91187 * 20 19 16 22 22 O 1.21284 * 119.99942 * 359.97438 * 21 20 19 23 23 C 1.50693 * 120.00146 * 179.72759 * 21 20 19 24 24 N 1.46502 * 109.47316 * 180.27180 * 23 21 20 25 25 C 1.34597 * 126.43576 * 124.99790 * 24 23 21 26 26 N 1.31071 * 106.67790 * 180.02562 * 25 24 23 27 27 N 1.28841 * 107.99415 * 0.02562 * 26 25 24 28 28 N 1.28741 * 109.39134 * 359.73334 * 27 26 25 29 29 H 1.08999 * 109.47221 * 302.19252 * 1 2 3 30 30 H 1.08999 * 109.47121 * 62.18977 * 1 2 3 31 31 H 1.08998 * 109.47304 * 182.18860 * 1 2 3 32 32 H 1.09002 * 109.46846 * 240.00567 * 2 1 3 33 33 H 1.08995 * 109.47233 * 120.00191 * 2 1 3 34 34 H 1.09000 * 109.47453 * 49.05932 * 4 3 2 35 35 H 1.08997 * 109.47473 * 169.06765 * 4 3 2 36 36 H 0.97006 * 120.00100 * 359.97438 * 7 5 4 37 37 H 0.97002 * 120.00053 * 179.97438 * 11 10 8 38 38 H 1.08999 * 109.47150 * 60.00041 * 18 16 3 39 39 H 1.09003 * 109.47360 * 179.97438 * 18 16 3 40 40 H 1.08994 * 109.47308 * 299.99801 * 18 16 3 41 41 H 1.09006 * 109.47148 * 295.92687 * 19 16 3 42 42 H 1.09003 * 109.47198 * 175.93084 * 19 16 3 43 43 H 0.96996 * 120.00111 * 354.91194 * 20 19 16 44 44 H 1.08997 * 109.47459 * 300.27445 * 23 21 20 45 45 H 1.09003 * 109.47252 * 60.27715 * 23 21 20 46 46 H 1.07999 * 126.66559 * 0.03854 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7163 2.0507 -1.2738 5 6 2.5862 1.4746 -2.3613 6 8 3.4483 0.6675 -2.0845 7 7 2.4063 1.8562 -3.6412 8 6 3.1973 1.3318 -4.6306 9 1 3.9649 0.6130 -4.3842 10 6 3.0115 1.7248 -5.9503 11 7 3.7700 1.2224 -6.8985 12 14 1.6844 2.9685 -6.3765 13 1 2.2506 4.3396 -6.3083 14 1 1.1840 2.7073 -7.7500 15 1 0.5637 2.8472 -5.4098 16 6 1.4663 2.1390 1.1329 17 1 0.3955 2.2812 0.9864 18 6 2.1542 3.5026 1.2227 19 6 1.7048 1.3611 2.4285 20 7 3.1360 1.0854 2.5761 21 6 3.5969 0.4980 3.6982 22 8 2.8269 0.1981 4.5860 23 6 5.0683 0.2088 3.8475 24 7 5.3110 -0.4328 5.1420 25 6 5.9316 -1.6095 5.3471 26 7 5.9358 -1.8118 6.6421 27 7 5.3480 -0.8119 7.2030 28 7 4.9739 0.0257 6.2998 29 1 -0.3633 0.5475 0.8697 30 1 -0.3633 0.4794 -0.9090 31 1 -0.3634 -1.0269 0.0392 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5138 0.8899 34 1 0.6676 1.8928 -1.5256 35 1 1.9108 3.1191 -1.1808 36 1 1.7167 2.5015 -3.8627 37 1 3.6401 1.4965 -7.8199 38 1 1.9843 4.0568 0.2997 39 1 1.7433 4.0623 2.0630 40 1 3.2249 3.3604 1.3693 41 1 1.1552 0.4203 2.3939 42 1 1.3593 1.9526 3.2764 43 1 3.7519 1.3255 1.8663 44 1 5.3911 -0.4559 3.0463 45 1 5.6293 1.1418 3.7937 46 1 6.3459 -2.2604 4.5914 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001151813453.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:52 Heat of formation + Delta-G solvation = 44.328568 kcal Electronic energy + Delta-G solvation = -29755.233906 eV Core-core repulsion = 25524.831854 eV Total energy + Delta-G solvation = -4230.402052 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.181 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -45.16000 -41.22857 -40.45637 -39.02427 -36.47675 -35.97801 -35.48595 -33.68364 -33.47065 -32.87167 -31.42577 -30.06460 -28.18699 -27.27437 -25.70081 -24.84489 -24.44974 -23.71393 -21.79092 -21.29063 -20.67941 -19.77030 -18.89572 -18.72492 -17.86770 -17.55059 -17.31691 -16.98998 -16.77775 -16.70669 -16.27846 -16.09892 -15.50305 -15.30969 -14.92529 -14.81493 -14.53697 -14.40951 -14.20636 -13.96611 -13.69663 -13.61501 -13.37548 -13.13934 -13.07427 -13.03231 -12.72285 -12.52299 -12.37513 -12.33545 -12.21469 -12.13275 -11.96538 -11.69421 -11.60325 -11.46842 -11.37418 -10.99714 -10.30500 -10.17213 -10.10570 -9.16324 -8.36715 -5.96055 0.27772 0.97085 1.25036 1.31845 1.37303 1.43801 1.45649 2.05419 2.10309 2.25613 2.61513 3.20035 3.26361 3.33927 3.48689 3.64892 3.74272 3.98126 4.03431 4.05211 4.07249 4.23844 4.31741 4.37208 4.40487 4.45152 4.54074 4.55372 4.67521 4.72221 4.76106 4.90218 5.04912 5.07828 5.12027 5.19227 5.30982 5.39892 5.43147 5.58019 5.94390 6.06091 6.20753 6.45239 6.65615 6.95596 7.10868 7.48045 7.57982 8.05416 8.80737 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.019046 B = 0.002272 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.764995 B =12323.589538 C =13049.871617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.053 3.947 3 N -0.515 5.515 4 C 0.047 3.953 5 C 0.457 3.543 6 O -0.599 6.599 7 N -0.598 5.598 8 C -0.318 4.318 9 H 0.059 0.941 10 C -0.018 4.018 11 N -0.937 5.937 12 Si 0.960 3.040 13 H -0.258 1.258 14 H -0.281 1.281 15 H -0.232 1.232 16 C 0.069 3.931 17 H 0.076 0.924 18 C -0.147 4.147 19 C 0.131 3.869 20 N -0.695 5.695 21 C 0.499 3.501 22 O -0.573 6.573 23 C 0.091 3.909 24 N -0.296 5.296 25 C 0.181 3.819 26 N -0.346 5.346 27 N -0.119 5.119 28 N -0.093 5.093 29 H 0.073 0.927 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.051 0.949 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.123 0.877 36 H 0.387 0.613 37 H 0.277 0.723 38 H 0.064 0.936 39 H 0.075 0.925 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.077 0.923 43 H 0.422 0.578 44 H 0.192 0.808 45 H 0.167 0.833 46 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.364 4.680 15.857 17.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.075 4.075 3 N -0.239 5.239 4 C -0.084 4.084 5 C 0.245 3.755 6 O -0.482 6.482 7 N -0.241 5.241 8 C -0.448 4.448 9 H 0.077 0.923 10 C -0.216 4.216 11 N -0.578 5.578 12 Si 0.781 3.219 13 H -0.182 1.182 14 H -0.206 1.206 15 H -0.156 1.156 16 C -0.039 4.039 17 H 0.093 0.907 18 C -0.204 4.204 19 C 0.006 3.994 20 N -0.348 5.348 21 C 0.284 3.716 22 O -0.452 6.452 23 C -0.032 4.032 24 N -0.099 5.099 25 C -0.116 4.116 26 N -0.193 5.193 27 N -0.114 5.114 28 N -0.081 5.081 29 H 0.092 0.908 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.141 0.859 36 H 0.222 0.778 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.094 0.906 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.096 0.904 43 H 0.261 0.739 44 H 0.210 0.790 45 H 0.184 0.816 46 H 0.305 0.695 Dipole moment (debyes) X Y Z Total from point charges -4.054 4.244 17.864 18.803 hybrid contribution -0.941 0.221 -2.351 2.542 sum -4.994 4.464 15.513 16.897 Atomic orbital electron populations 1.22431 0.97174 1.02946 1.02252 1.22093 0.93282 0.89886 1.02256 1.61796 1.59368 1.01856 1.00920 1.21917 0.97472 1.00625 0.88420 1.20837 0.86827 0.84512 0.83316 1.90525 1.37619 1.37400 1.82639 1.42092 1.33762 1.41689 1.06528 1.18965 1.14710 1.23870 0.87231 0.92327 1.26048 1.00572 1.00300 0.94652 1.69801 1.41171 1.45315 1.01546 0.85429 0.78839 0.78617 0.79038 1.18232 1.20642 1.15553 1.21999 0.99036 0.94169 0.88677 0.90678 1.21916 1.01466 0.94269 1.02790 1.21442 0.81315 0.99764 0.96835 1.45713 1.10070 1.60295 1.18740 1.20641 0.90594 0.78105 0.82309 1.90836 1.59016 1.53521 1.41844 1.22505 0.95089 1.05231 0.80424 1.48388 1.37068 1.16347 1.08053 1.28737 0.97270 0.88756 0.96867 1.74887 1.18754 1.19615 1.06078 1.78626 1.11847 0.98223 1.22663 1.78899 1.17518 1.22868 0.88776 0.90796 0.92829 0.91924 0.93052 0.90188 0.90761 0.85948 0.77833 0.91402 0.91718 0.90571 0.91773 0.91952 0.90438 0.73915 0.79044 0.81566 0.69461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.49 9.00 71.98 0.65 -2.84 16 2 C 0.05 1.21 5.19 86.30 0.45 1.65 16 3 N -0.51 -10.65 3.61 -875.52 -3.16 -13.81 16 4 C 0.05 1.12 5.22 85.56 0.45 1.57 16 5 C 0.46 17.73 7.32 87.66 0.64 18.37 16 6 O -0.60 -28.46 14.65 -3.08 -0.05 -28.51 16 7 N -0.60 -25.47 5.09 -306.98 -1.56 -27.04 16 8 C -0.32 -17.37 10.16 84.04 0.85 -16.51 16 9 H 0.06 3.83 7.39 -2.91 -0.02 3.80 16 10 C -0.02 -0.93 5.50 84.93 0.47 -0.46 16 11 N -0.94 -54.40 13.96 21.66 0.30 -54.10 16 12 Si 0.96 36.72 27.74 68.60 1.90 38.63 16 13 H -0.26 -9.33 7.11 99.48 0.71 -8.63 16 14 H -0.28 -10.92 7.11 99.48 0.71 -10.21 16 15 H -0.23 -7.36 6.52 99.48 0.65 -6.71 16 16 C 0.07 0.95 1.68 44.91 0.08 1.03 16 17 H 0.08 0.90 6.69 -2.39 -0.02 0.88 16 18 C -0.15 -1.71 8.99 71.98 0.65 -1.07 16 19 C 0.13 1.93 4.41 86.38 0.38 2.31 16 20 N -0.69 -9.34 4.89 -463.06 -2.26 -11.60 16 21 C 0.50 8.07 7.85 87.65 0.69 8.76 16 22 O -0.57 -15.50 15.70 -3.04 -0.05 -15.55 16 23 C 0.09 0.70 6.96 85.63 0.60 1.30 16 24 N -0.30 -4.88 3.19 -355.57 -1.13 -6.02 16 25 C 0.18 2.53 12.79 180.27 2.31 4.84 16 26 N -0.35 -8.41 12.36 -60.30 -0.74 -9.16 16 27 N -0.12 -3.53 13.43 37.01 0.50 -3.03 16 28 N -0.09 -2.46 12.30 37.02 0.46 -2.00 16 29 H 0.07 1.08 5.75 -2.39 -0.01 1.07 16 30 H 0.05 1.04 6.52 -2.39 -0.02 1.02 16 31 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.05 1.64 6.44 -2.39 -0.02 1.62 16 33 H 0.08 1.69 6.41 -2.39 -0.02 1.68 16 34 H 0.07 1.55 6.21 -2.39 -0.01 1.53 16 35 H 0.12 2.33 5.87 -2.39 -0.01 2.32 16 36 H 0.39 13.65 5.76 -92.70 -0.53 13.11 16 37 H 0.28 14.77 8.31 -92.71 -0.77 14.00 16 38 H 0.06 0.76 6.24 -2.39 -0.01 0.75 16 39 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.06 0.78 7.23 -2.39 -0.02 0.77 16 41 H 0.06 1.07 5.93 -2.38 -0.01 1.05 16 42 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.42 4.90 7.39 -92.71 -0.68 4.21 16 44 H 0.19 -0.26 8.08 -2.39 -0.02 -0.28 16 45 H 0.17 0.34 8.14 -2.39 -0.02 0.32 16 46 H 0.29 0.17 8.06 -2.91 -0.02 0.15 16 Total: -1.00 -89.98 373.56 2.18 -87.80 By element: Atomic # 1 Polarization: 25.65 SS G_CDS: -0.22 Total: 25.43 kcal Atomic # 6 Polarization: 10.76 SS G_CDS: 8.20 Total: 18.95 kcal Atomic # 7 Polarization: -119.14 SS G_CDS: -7.61 Total: -126.75 kcal Atomic # 8 Polarization: -43.96 SS G_CDS: -0.09 Total: -44.06 kcal Atomic # 14 Polarization: 36.72 SS G_CDS: 1.90 Total: 38.63 kcal Total: -89.98 2.18 -87.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151813453.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.130 kcal (2) G-P(sol) polarization free energy of solvation -89.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds