Wall clock time and date at job start Tue Mar 31 2020 23:02:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 N 1.46903 * 109.47056 * 2 1
4 4 C 1.46894 * 111.00398 * 291.73779 * 3 2 1
5 5 C 1.50708 * 109.46962 * 289.06399 * 4 3 2
6 6 O 1.21295 * 119.99789 * 354.55510 * 5 4 3
7 7 N 1.34767 * 120.00238 * 174.55927 * 5 4 3
8 8 C 1.37099 * 120.00408 * 180.02562 * 7 5 4
9 9 H 1.08006 * 119.99568 * 359.97438 * 8 7 5
10 10 C 1.38945 * 120.00435 * 179.97438 * 8 7 5
11 11 N 1.31409 * 119.99804 * 0.02562 * 10 8 7
12 12 Si 1.86801 * 120.00059 * 179.97438 * 10 8 7
13 13 H 1.48503 * 109.47161 * 359.97438 * 12 10 8
14 14 H 1.48489 * 109.47293 * 120.00151 * 12 10 8
15 15 H 1.48510 * 109.47110 * 240.00313 * 12 10 8
16 16 C 1.46906 * 110.99812 * 55.69069 * 3 2 1
17 17 H 1.09003 * 109.47020 * 291.59121 * 16 3 2
18 18 C 1.52994 * 109.47177 * 171.58849 * 16 3 2
19 19 C 1.52999 * 109.47205 * 51.58711 * 16 3 2
20 20 N 1.46496 * 109.47002 * 55.92609 * 19 16 3
21 21 C 1.34780 * 120.00034 * 174.91187 * 20 19 16
22 22 O 1.21284 * 119.99942 * 359.97438 * 21 20 19
23 23 C 1.50693 * 120.00146 * 179.72759 * 21 20 19
24 24 N 1.46502 * 109.47316 * 180.27180 * 23 21 20
25 25 N 1.28888 * 125.44494 * 90.00120 * 24 23 21
26 26 C 1.31042 * 107.91406 * 180.02562 * 25 24 23
27 27 N 1.33319 * 106.89990 * 359.97438 * 26 25 24
28 28 N 1.28781 * 125.45063 * 269.69633 * 24 23 21
29 29 H 1.08999 * 109.47221 * 302.19252 * 1 2 3
30 30 H 1.08999 * 109.47121 * 62.18977 * 1 2 3
31 31 H 1.08998 * 109.47304 * 182.18860 * 1 2 3
32 32 H 1.09002 * 109.46846 * 240.00567 * 2 1 3
33 33 H 1.08995 * 109.47233 * 120.00191 * 2 1 3
34 34 H 1.09000 * 109.47453 * 49.05932 * 4 3 2
35 35 H 1.08997 * 109.47473 * 169.06765 * 4 3 2
36 36 H 0.97006 * 120.00100 * 359.97438 * 7 5 4
37 37 H 0.97002 * 119.99798 * 180.02562 * 11 10 8
38 38 H 1.08999 * 109.47150 * 60.00041 * 18 16 3
39 39 H 1.09003 * 109.47360 * 179.97438 * 18 16 3
40 40 H 1.08994 * 109.47308 * 299.99801 * 18 16 3
41 41 H 1.09006 * 109.47148 * 295.92687 * 19 16 3
42 42 H 1.09003 * 109.47198 * 175.93084 * 19 16 3
43 43 H 0.96996 * 120.00111 * 354.91194 * 20 19 16
44 44 H 1.08997 * 109.47459 * 300.27445 * 23 21 20
45 45 H 1.09003 * 109.47252 * 60.27715 * 23 21 20
46 46 H 1.07993 * 126.54898 * 179.97438 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0196 1.3850 0.0000
4 6 1.7163 2.0507 -1.2738
5 6 2.5862 1.4746 -2.3613
6 8 3.4483 0.6675 -2.0845
7 7 2.4063 1.8562 -3.6412
8 6 3.1973 1.3318 -4.6306
9 1 3.9649 0.6130 -4.3842
10 6 3.0115 1.7248 -5.9503
11 7 2.0779 2.5997 -6.2501
12 14 4.0898 1.0107 -7.2982
13 1 5.0587 0.0555 -6.7031
14 1 3.2400 0.3020 -8.2885
15 1 4.8284 2.1073 -7.9745
16 6 1.4663 2.1390 1.1329
17 1 0.3955 2.2812 0.9864
18 6 2.1542 3.5026 1.2227
19 6 1.7048 1.3611 2.4285
20 7 3.1360 1.0854 2.5761
21 6 3.5969 0.4980 3.6982
22 8 2.8269 0.1981 4.5860
23 6 5.0683 0.2088 3.8475
24 7 5.3110 -0.4328 5.1420
25 7 5.2944 -1.7028 5.3615
26 6 5.5537 -1.8957 6.6315
27 7 5.7299 -0.6926 7.1782
28 7 5.5806 0.1814 6.2412
29 1 -0.3633 0.5475 0.8697
30 1 -0.3633 0.4794 -0.9090
31 1 -0.3634 -1.0269 0.0392
32 1 1.8933 -0.5138 -0.8901
33 1 1.8933 -0.5138 0.8899
34 1 0.6676 1.8928 -1.5256
35 1 1.9108 3.1191 -1.1808
36 1 1.7167 2.5015 -3.8627
37 1 1.9480 2.8738 -7.1714
38 1 1.9843 4.0568 0.2997
39 1 1.7433 4.0623 2.0630
40 1 3.2249 3.3604 1.3693
41 1 1.1552 0.4203 2.3939
42 1 1.3593 1.9526 3.2764
43 1 3.7519 1.3255 1.8663
44 1 5.3911 -0.4559 3.0463
45 1 5.6293 1.1418 3.7937
46 1 5.6133 -2.8474 7.1383
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001153375596.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 23:02:57
Heat of formation + Delta-G solvation = 77.462878 kcal
Electronic energy + Delta-G solvation = -29698.712148 eV
Core-core repulsion = 25469.746907 eV
Total energy + Delta-G solvation = -4228.965241 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 339.181 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-44.52347 -40.34110 -39.14779 -37.52966 -35.22237 -34.75948 -33.89294 -33.27889
-32.03568 -31.32416 -30.34023 -29.31170 -26.99944 -26.18610 -24.28070 -24.15867
-23.54913 -22.71671 -21.08325 -19.95941 -18.90112 -18.32931 -18.15679 -17.84646
-16.74491 -16.60635 -16.31710 -15.88688 -15.55525 -15.51610 -15.00825 -14.69270
-14.31752 -14.08884 -14.01687 -13.80303 -13.60476 -13.25420 -13.19469 -12.87439
-12.52896 -12.37680 -12.17674 -12.10958 -11.74741 -11.67754 -11.53397 -11.45258
-11.37529 -11.17457 -11.15935 -10.87398 -10.69827 -10.54413 -10.39654 -10.28016
-10.16957 -9.54587 -9.34684 -8.55742 -8.04643 -7.98800 -6.47546 -3.88432
0.96497 1.51438 2.05667 2.12752 2.83103 3.11470 3.22649 3.28911
3.77223 3.83082 3.84938 4.15141 4.16049 4.24224 4.44711 4.52781
4.65993 4.77402 5.01141 5.07153 5.18542 5.24458 5.30448 5.37974
5.46916 5.47874 5.48204 5.52876 5.56822 5.65064 5.77922 5.81705
5.86316 5.94774 6.10991 6.11107 6.16003 6.24180 6.40658 7.09740
7.15619 7.21111 7.49578 7.78144 8.00530 8.14966 8.55515 9.12643
9.48852 10.00105 10.70174
Molecular weight = 339.18amu
Principal moments of inertia in cm(-1)
A = 0.016384 B = 0.002266 C = 0.002111
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1708.522693 B =12351.387504 C =13258.128769
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.195 4.195
2 C 0.048 3.952
3 N -0.507 5.507
4 C 0.038 3.962
5 C 0.445 3.555
6 O -0.578 6.578
7 N -0.566 5.566
8 C -0.298 4.298
9 H 0.103 0.897
10 C 0.022 3.978
11 N -0.901 5.901
12 Si 0.928 3.072
13 H -0.268 1.268
14 H -0.282 1.282
15 H -0.282 1.282
16 C 0.061 3.939
17 H 0.061 0.939
18 C -0.147 4.147
19 C 0.129 3.871
20 N -0.701 5.701
21 C 0.504 3.496
22 O -0.531 6.531
23 C 0.108 3.892
24 N -0.124 5.124
25 N -0.299 5.299
26 C 0.143 3.857
27 N -0.287 5.287
28 N -0.051 5.051
29 H 0.053 0.947
30 H 0.058 0.942
31 H 0.059 0.941
32 H 0.093 0.907
33 H 0.072 0.928
34 H 0.052 0.948
35 H 0.091 0.909
36 H 0.391 0.609
37 H 0.271 0.729
38 H 0.064 0.936
39 H 0.059 0.941
40 H 0.064 0.936
41 H 0.072 0.928
42 H 0.075 0.925
43 H 0.418 0.582
44 H 0.150 0.850
45 H 0.148 0.852
46 H 0.236 0.764
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.306 -1.099 17.384 17.421
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.254 4.254
2 C -0.080 4.080
3 N -0.231 5.231
4 C -0.093 4.093
5 C 0.230 3.770
6 O -0.462 6.462
7 N -0.202 5.202
8 C -0.427 4.427
9 H 0.121 0.879
10 C -0.180 4.180
11 N -0.543 5.543
12 Si 0.755 3.245
13 H -0.192 1.192
14 H -0.208 1.208
15 H -0.208 1.208
16 C -0.048 4.048
17 H 0.079 0.921
18 C -0.205 4.205
19 C 0.005 3.995
20 N -0.355 5.355
21 C 0.286 3.714
22 O -0.407 6.407
23 C -0.016 4.016
24 N -0.035 5.035
25 N -0.149 5.149
26 C -0.160 4.160
27 N -0.158 5.158
28 N -0.045 5.045
29 H 0.072 0.928
30 H 0.077 0.923
31 H 0.078 0.922
32 H 0.112 0.888
33 H 0.090 0.910
34 H 0.070 0.930
35 H 0.109 0.891
36 H 0.224 0.776
37 H 0.081 0.919
38 H 0.083 0.917
39 H 0.078 0.922
40 H 0.083 0.917
41 H 0.090 0.910
42 H 0.093 0.907
43 H 0.256 0.744
44 H 0.168 0.832
45 H 0.166 0.834
46 H 0.252 0.748
Dipole moment (debyes) X Y Z Total
from point charges 0.809 -1.130 17.957 18.011
hybrid contribution -0.734 -0.355 -1.427 1.643
sum 0.075 -1.485 16.530 16.597
Atomic orbital electron populations
1.22490 0.98846 1.02338 1.01692 1.22251 0.91960 0.89838 1.03961
1.61877 1.58392 1.01880 1.00976 1.21978 0.98197 0.99426 0.89702
1.19707 0.87558 0.86447 0.83275 1.90505 1.36531 1.36914 1.82208
1.41887 1.33223 1.39972 1.05155 1.19717 1.14296 1.22924 0.85775
0.87897 1.25256 0.97455 0.96773 0.98500 1.69615 1.32461 1.32004
1.20209 0.85820 0.79595 0.78748 0.80305 1.19237 1.20791 1.20755
1.21962 0.98253 0.94197 0.90342 0.92110 1.21902 1.01483 0.95009
1.02111 1.21512 0.80833 1.00222 0.96949 1.45730 1.10250 1.60692
1.18781 1.20156 0.89304 0.78816 0.83152 1.90808 1.57565 1.51736
1.40615 1.22041 0.97207 1.02025 0.80373 1.49495 1.41837 1.02123
1.10079 1.74739 1.20716 0.99124 1.20304 1.27345 1.01363 0.99654
0.87636 1.75872 1.18761 0.98746 1.22446 1.78986 1.13723 1.22679
0.89111 0.92812 0.92306 0.92176 0.88829 0.91011 0.93019 0.89059
0.77588 0.91924 0.91741 0.92152 0.91656 0.90975 0.90651 0.74448
0.83245 0.83387 0.74826
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.19 -2.25 9.00 37.16 0.33 -1.92 16
2 C 0.05 0.64 5.19 -3.82 -0.02 0.62 16
3 N -0.51 -6.54 3.61 -228.08 -0.82 -7.36 16
4 C 0.04 0.58 5.22 -4.98 -0.03 0.55 16
5 C 0.44 9.43 7.32 -10.99 -0.08 9.35 16
6 O -0.58 -14.03 14.65 5.54 0.08 -13.94 16
7 N -0.57 -13.36 5.29 -10.96 -0.06 -13.42 16
8 C -0.30 -7.87 9.68 -14.93 -0.14 -8.02 16
9 H 0.10 2.87 7.16 -52.48 -0.38 2.49 16
10 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16
11 N -0.90 -23.67 13.05 55.50 0.72 -22.95 16
12 Si 0.93 20.33 29.55 -169.99 -5.02 15.30 16
13 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16
14 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16
15 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16
16 C 0.06 0.60 1.68 -67.71 -0.11 0.48 16
17 H 0.06 0.57 6.69 -51.93 -0.35 0.23 16
18 C -0.15 -1.30 8.99 37.15 0.33 -0.97 16
19 C 0.13 1.24 4.41 -4.04 -0.02 1.22 16
20 N -0.70 -6.40 4.89 -60.30 -0.29 -6.70 16
21 C 0.50 5.27 7.90 -10.99 -0.09 5.18 16
22 O -0.53 -7.91 16.43 5.55 0.09 -7.82 16
23 C 0.11 0.84 7.08 -5.20 -0.04 0.80 16
24 N -0.12 -1.40 3.49 -11.72 -0.04 -1.44 16
25 N -0.30 -3.49 12.13 29.34 0.36 -3.14 16
26 C 0.14 1.45 13.26 -91.58 -1.21 0.24 16
27 N -0.29 -3.60 12.50 29.33 0.37 -3.24 16
28 N -0.05 -0.65 13.25 60.35 0.80 0.15 16
29 H 0.05 0.54 5.75 -51.93 -0.30 0.24 16
30 H 0.06 0.73 6.52 -51.93 -0.34 0.39 16
31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16
32 H 0.09 1.60 6.44 -51.93 -0.33 1.27 16
33 H 0.07 0.90 6.41 -51.93 -0.33 0.57 16
34 H 0.05 0.74 6.21 -51.93 -0.32 0.42 16
35 H 0.09 1.25 5.87 -51.93 -0.30 0.94 16
36 H 0.39 8.91 7.90 -40.82 -0.32 8.59 16
37 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16
38 H 0.06 0.61 6.24 -51.93 -0.32 0.28 16
39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16
40 H 0.06 0.58 7.23 -51.93 -0.38 0.20 16
41 H 0.07 0.77 5.93 -51.93 -0.31 0.46 16
42 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16
43 H 0.42 3.53 7.39 -40.82 -0.30 3.23 16
44 H 0.15 0.82 8.14 -51.93 -0.42 0.39 16
45 H 0.15 0.65 8.14 -51.93 -0.42 0.23 16
46 H 0.24 1.24 8.06 -52.49 -0.42 0.81 16
LS Contribution 378.20 15.07 5.70 5.70
Total: -1.00 -34.75 378.20 -5.25 -39.99
By element:
Atomic # 1 Polarization: 16.81 SS G_CDS: -5.96 Total: 10.85 kcal
Atomic # 6 Polarization: 9.18 SS G_CDS: -1.17 Total: 8.01 kcal
Atomic # 7 Polarization: -59.12 SS G_CDS: 1.03 Total: -58.09 kcal
Atomic # 8 Polarization: -21.94 SS G_CDS: 0.17 Total: -21.76 kcal
Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.30 kcal
Total LS contribution 5.70 Total: 5.70 kcal
Total: -34.75 -5.25 -39.99 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001153375596.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 117.456 kcal
(2) G-P(sol) polarization free energy of solvation -34.746 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.710 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.247 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.993 kcal
(6) G-S(sol) free energy of system = (1) + (5) 77.463 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.67 seconds