Wall clock time and date at job start Tue Mar 31 2020 23:02:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 N 1.46903 * 109.47056 * 2 1
4 4 C 1.46894 * 111.00398 * 291.73779 * 3 2 1
5 5 C 1.50708 * 109.46962 * 289.06399 * 4 3 2
6 6 O 1.21295 * 119.99789 * 354.55510 * 5 4 3
7 7 N 1.34767 * 120.00238 * 174.55927 * 5 4 3
8 8 C 1.37099 * 120.00408 * 180.02562 * 7 5 4
9 9 H 1.08006 * 119.99568 * 359.97438 * 8 7 5
10 10 C 1.38945 * 120.00435 * 179.97438 * 8 7 5
11 11 N 1.31409 * 119.99804 * 0.02562 * 10 8 7
12 12 Si 1.86801 * 120.00059 * 179.97438 * 10 8 7
13 13 H 1.48503 * 109.47161 * 359.97438 * 12 10 8
14 14 H 1.48489 * 109.47293 * 120.00151 * 12 10 8
15 15 H 1.48510 * 109.47110 * 240.00313 * 12 10 8
16 16 C 1.46906 * 110.99812 * 55.69069 * 3 2 1
17 17 H 1.09003 * 109.47020 * 291.59121 * 16 3 2
18 18 C 1.52994 * 109.47177 * 171.58849 * 16 3 2
19 19 C 1.52999 * 109.47205 * 51.58711 * 16 3 2
20 20 N 1.46496 * 109.47002 * 55.92609 * 19 16 3
21 21 C 1.34780 * 120.00034 * 174.91187 * 20 19 16
22 22 O 1.21284 * 119.99942 * 359.97438 * 21 20 19
23 23 C 1.50693 * 120.00146 * 179.72759 * 21 20 19
24 24 N 1.46502 * 109.47316 * 180.27180 * 23 21 20
25 25 N 1.28888 * 125.44494 * 90.00120 * 24 23 21
26 26 C 1.31042 * 107.91406 * 180.02562 * 25 24 23
27 27 N 1.33319 * 106.89990 * 359.97438 * 26 25 24
28 28 N 1.28781 * 125.45063 * 269.69633 * 24 23 21
29 29 H 1.08999 * 109.47221 * 302.19252 * 1 2 3
30 30 H 1.08999 * 109.47121 * 62.18977 * 1 2 3
31 31 H 1.08998 * 109.47304 * 182.18860 * 1 2 3
32 32 H 1.09002 * 109.46846 * 240.00567 * 2 1 3
33 33 H 1.08995 * 109.47233 * 120.00191 * 2 1 3
34 34 H 1.09000 * 109.47453 * 49.05932 * 4 3 2
35 35 H 1.08997 * 109.47473 * 169.06765 * 4 3 2
36 36 H 0.97006 * 120.00100 * 359.97438 * 7 5 4
37 37 H 0.97002 * 119.99798 * 180.02562 * 11 10 8
38 38 H 1.08999 * 109.47150 * 60.00041 * 18 16 3
39 39 H 1.09003 * 109.47360 * 179.97438 * 18 16 3
40 40 H 1.08994 * 109.47308 * 299.99801 * 18 16 3
41 41 H 1.09006 * 109.47148 * 295.92687 * 19 16 3
42 42 H 1.09003 * 109.47198 * 175.93084 * 19 16 3
43 43 H 0.96996 * 120.00111 * 354.91194 * 20 19 16
44 44 H 1.08997 * 109.47459 * 300.27445 * 23 21 20
45 45 H 1.09003 * 109.47252 * 60.27715 * 23 21 20
46 46 H 1.07993 * 126.54898 * 179.97438 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0196 1.3850 0.0000
4 6 1.7163 2.0507 -1.2738
5 6 2.5862 1.4746 -2.3613
6 8 3.4483 0.6675 -2.0845
7 7 2.4063 1.8562 -3.6412
8 6 3.1973 1.3318 -4.6306
9 1 3.9649 0.6130 -4.3842
10 6 3.0115 1.7248 -5.9503
11 7 2.0779 2.5997 -6.2501
12 14 4.0898 1.0107 -7.2982
13 1 5.0587 0.0555 -6.7031
14 1 3.2400 0.3020 -8.2885
15 1 4.8284 2.1073 -7.9745
16 6 1.4663 2.1390 1.1329
17 1 0.3955 2.2812 0.9864
18 6 2.1542 3.5026 1.2227
19 6 1.7048 1.3611 2.4285
20 7 3.1360 1.0854 2.5761
21 6 3.5969 0.4980 3.6982
22 8 2.8269 0.1981 4.5860
23 6 5.0683 0.2088 3.8475
24 7 5.3110 -0.4328 5.1420
25 7 5.2944 -1.7028 5.3615
26 6 5.5537 -1.8957 6.6315
27 7 5.7299 -0.6926 7.1782
28 7 5.5806 0.1814 6.2412
29 1 -0.3633 0.5475 0.8697
30 1 -0.3633 0.4794 -0.9090
31 1 -0.3634 -1.0269 0.0392
32 1 1.8933 -0.5138 -0.8901
33 1 1.8933 -0.5138 0.8899
34 1 0.6676 1.8928 -1.5256
35 1 1.9108 3.1191 -1.1808
36 1 1.7167 2.5015 -3.8627
37 1 1.9480 2.8738 -7.1714
38 1 1.9843 4.0568 0.2997
39 1 1.7433 4.0623 2.0630
40 1 3.2249 3.3604 1.3693
41 1 1.1552 0.4203 2.3939
42 1 1.3593 1.9526 3.2764
43 1 3.7519 1.3255 1.8663
44 1 5.3911 -0.4559 3.0463
45 1 5.6293 1.1418 3.7937
46 1 5.6133 -2.8474 7.1383
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001153375596.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 23:02:56
Heat of formation + Delta-G solvation = 49.892796 kcal
Electronic energy + Delta-G solvation = -29699.907676 eV
Core-core repulsion = 25469.746907 eV
Total energy + Delta-G solvation = -4230.160769 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 339.181 amu
Computer time = 0.85 seconds
Orbital eigenvalues (eV)
-45.34607 -41.25630 -40.40530 -38.95904 -36.08799 -35.91779 -35.51315 -34.11274
-33.21978 -32.89909 -31.39610 -30.18384 -28.11361 -27.31921 -25.87957 -24.96916
-24.39781 -23.71185 -21.90421 -21.27412 -20.30260 -19.65195 -19.14430 -18.91807
-17.85869 -17.55376 -17.28081 -17.06947 -16.50196 -16.45547 -16.39085 -16.06285
-15.57921 -15.27064 -15.10334 -14.91298 -14.78485 -14.41854 -14.11845 -13.80119
-13.64283 -13.49862 -13.38648 -13.08255 -13.00175 -12.95991 -12.71908 -12.53553
-12.36602 -12.33585 -12.25320 -12.10641 -12.03587 -11.74860 -11.68983 -11.60553
-11.37408 -11.02252 -10.22773 -10.17167 -9.94105 -9.15848 -8.42697 -5.89994
0.11529 0.81901 1.25896 1.33407 1.38099 1.43622 1.56566 2.07568
2.14165 2.30287 2.73903 3.17832 3.25224 3.43530 3.48132 3.52722
3.71817 3.93680 3.98879 4.03859 4.10003 4.30488 4.31726 4.36035
4.50633 4.53406 4.60584 4.65899 4.72074 4.74903 4.79196 4.89263
5.03568 5.05382 5.06437 5.11491 5.27464 5.35858 5.41584 5.45568
5.91695 6.11723 6.22060 6.36652 6.66271 7.00481 7.19112 7.31211
7.64587 8.20166 8.74926
Molecular weight = 339.18amu
Principal moments of inertia in cm(-1)
A = 0.016384 B = 0.002266 C = 0.002111
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1708.522693 B =12351.387504 C =13258.128769
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.188 4.188
2 C 0.053 3.947
3 N -0.513 5.513
4 C 0.051 3.949
5 C 0.447 3.553
6 O -0.610 6.610
7 N -0.580 5.580
8 C -0.324 4.324
9 H 0.079 0.921
10 C -0.016 4.016
11 N -0.923 5.923
12 Si 0.988 3.012
13 H -0.273 1.273
14 H -0.275 1.275
15 H -0.273 1.273
16 C 0.068 3.932
17 H 0.074 0.926
18 C -0.147 4.147
19 C 0.131 3.869
20 N -0.691 5.691
21 C 0.506 3.494
22 O -0.578 6.578
23 C 0.102 3.898
24 N -0.122 5.122
25 N -0.320 5.320
26 C 0.148 3.852
27 N -0.312 5.312
28 N -0.071 5.071
29 H 0.073 0.927
30 H 0.049 0.951
31 H 0.063 0.937
32 H 0.051 0.949
33 H 0.079 0.921
34 H 0.066 0.934
35 H 0.114 0.886
36 H 0.394 0.606
37 H 0.275 0.725
38 H 0.060 0.940
39 H 0.078 0.922
40 H 0.064 0.936
41 H 0.064 0.936
42 H 0.082 0.918
43 H 0.423 0.577
44 H 0.174 0.826
45 H 0.183 0.817
46 H 0.274 0.726
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.184 -0.585 17.870 17.881
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.247 4.247
2 C -0.074 4.074
3 N -0.238 5.238
4 C -0.079 4.079
5 C 0.234 3.766
6 O -0.495 6.495
7 N -0.218 5.218
8 C -0.453 4.453
9 H 0.097 0.903
10 C -0.215 4.215
11 N -0.564 5.564
12 Si 0.812 3.188
13 H -0.197 1.197
14 H -0.200 1.200
15 H -0.199 1.199
16 C -0.040 4.040
17 H 0.092 0.908
18 C -0.204 4.204
19 C 0.007 3.993
20 N -0.344 5.344
21 C 0.290 3.710
22 O -0.458 6.458
23 C -0.021 4.021
24 N -0.035 5.035
25 N -0.169 5.169
26 C -0.155 4.155
27 N -0.183 5.183
28 N -0.064 5.064
29 H 0.092 0.908
30 H 0.068 0.932
31 H 0.082 0.918
32 H 0.070 0.930
33 H 0.097 0.903
34 H 0.084 0.916
35 H 0.132 0.868
36 H 0.227 0.773
37 H 0.084 0.916
38 H 0.079 0.921
39 H 0.097 0.903
40 H 0.083 0.917
41 H 0.082 0.918
42 H 0.100 0.900
43 H 0.262 0.738
44 H 0.191 0.809
45 H 0.200 0.800
46 H 0.290 0.710
Dipole moment (debyes) X Y Z Total
from point charges 0.684 -0.589 18.436 18.458
hybrid contribution -0.707 -0.547 -1.511 1.755
sum -0.023 -1.136 16.925 16.964
Atomic orbital electron populations
1.22421 0.97218 1.02944 1.02111 1.22084 0.93244 0.89922 1.02195
1.61814 1.59239 1.01827 1.00898 1.21817 0.97281 1.00205 0.88647
1.20766 0.87133 0.85025 0.83646 1.90482 1.38074 1.38103 1.82825
1.41967 1.33462 1.40631 1.05738 1.19639 1.14920 1.23551 0.87225
0.90273 1.25963 0.98549 0.96992 0.99983 1.69674 1.33302 1.32622
1.20829 0.84936 0.78008 0.78120 0.77698 1.19718 1.20043 1.19854
1.22007 0.98996 0.94233 0.88761 0.90815 1.21913 1.01506 0.94266
1.02712 1.21484 0.80976 0.99882 0.96956 1.45692 1.10271 1.59929
1.18513 1.20517 0.90089 0.77861 0.82519 1.90790 1.58999 1.53840
1.42196 1.22441 0.95697 1.04149 0.79813 1.49767 1.41056 1.02095
1.10559 1.74730 1.21531 0.99517 1.21158 1.28168 0.99623 1.00451
0.87258 1.75838 1.19809 0.99653 1.23001 1.78919 1.14539 1.23233
0.89755 0.90769 0.93180 0.91759 0.93015 0.90267 0.91635 0.86808
0.77258 0.91555 0.92090 0.90319 0.91689 0.91821 0.90009 0.73841
0.80905 0.79960 0.71020
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.19 -4.06 9.00 71.98 0.65 -3.41 16
2 C 0.05 1.40 5.19 86.30 0.45 1.84 16
3 N -0.51 -12.45 3.61 -875.52 -3.16 -15.61 16
4 C 0.05 1.49 5.22 85.56 0.45 1.93 16
5 C 0.45 19.04 7.32 87.66 0.64 19.68 16
6 O -0.61 -30.13 14.65 -3.08 -0.05 -30.17 16
7 N -0.58 -27.77 5.29 -306.98 -1.62 -29.39 16
8 C -0.32 -17.48 9.68 84.04 0.81 -16.66 16
9 H 0.08 4.57 7.16 -2.91 -0.02 4.55 16
10 C -0.02 -0.81 5.50 84.93 0.47 -0.34 16
11 N -0.92 -48.36 13.05 21.66 0.28 -48.08 16
12 Si 0.99 41.71 29.55 68.60 2.03 43.74 16
13 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16
14 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16
15 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16
16 C 0.07 1.15 1.68 44.91 0.08 1.23 16
17 H 0.07 1.13 6.69 -2.39 -0.02 1.12 16
18 C -0.15 -2.16 8.99 71.98 0.65 -1.51 16
19 C 0.13 2.25 4.41 86.38 0.38 2.63 16
20 N -0.69 -11.42 4.89 -463.06 -2.26 -13.68 16
21 C 0.51 9.94 7.90 87.65 0.69 10.63 16
22 O -0.58 -16.89 16.43 -3.04 -0.05 -16.94 16
23 C 0.10 1.40 7.08 85.63 0.61 2.01 16
24 N -0.12 -2.63 3.49 -190.99 -0.67 -3.30 16
25 N -0.32 -7.12 12.13 -61.10 -0.74 -7.86 16
26 C 0.15 2.82 13.26 180.68 2.40 5.22 16
27 N -0.31 -7.65 12.50 -61.11 -0.76 -8.41 16
28 N -0.07 -1.76 13.25 37.02 0.49 -1.27 16
29 H 0.07 1.30 5.75 -2.39 -0.01 1.28 16
30 H 0.05 1.17 6.52 -2.39 -0.02 1.15 16
31 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16
32 H 0.05 1.80 6.44 -2.39 -0.02 1.79 16
33 H 0.08 1.93 6.41 -2.39 -0.02 1.91 16
34 H 0.07 1.76 6.21 -2.39 -0.01 1.75 16
35 H 0.11 2.84 5.87 -2.39 -0.01 2.83 16
36 H 0.39 18.09 7.90 -92.70 -0.73 17.36 16
37 H 0.28 13.56 8.31 -92.71 -0.77 12.79 16
38 H 0.06 0.96 6.24 -2.39 -0.01 0.95 16
39 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16
40 H 0.06 0.97 7.23 -2.39 -0.02 0.95 16
41 H 0.06 1.24 5.93 -2.38 -0.01 1.22 16
42 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16
43 H 0.42 6.32 7.39 -92.71 -0.68 5.63 16
44 H 0.17 1.54 8.14 -2.39 -0.02 1.52 16
45 H 0.18 1.16 8.14 -2.39 -0.02 1.14 16
46 H 0.27 2.32 8.06 -2.91 -0.02 2.30 16
Total: -1.00 -77.13 378.20 1.39 -75.74
By element:
Atomic # 1 Polarization: 32.35 SS G_CDS: -0.36 Total: 31.99 kcal
Atomic # 6 Polarization: 15.00 SS G_CDS: 8.26 Total: 23.26 kcal
Atomic # 7 Polarization: -119.17 SS G_CDS: -8.44 Total: -127.61 kcal
Atomic # 8 Polarization: -47.02 SS G_CDS: -0.10 Total: -47.12 kcal
Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.74 kcal
Total: -77.13 1.39 -75.74 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001153375596.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 125.630 kcal
(2) G-P(sol) polarization free energy of solvation -77.130 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.501 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.392 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.738 kcal
(6) G-S(sol) free energy of system = (1) + (5) 49.893 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.85 seconds