Wall clock time and date at job start Tue Mar 31 2020 23:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30723 * 1 3 3 Si 1.86801 * 120.00346 * 2 1 4 4 H 1.48500 * 109.47202 * 239.99947 * 3 2 1 5 5 H 1.48504 * 109.47164 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47193 * 120.00101 * 3 2 1 7 7 C 1.40057 * 119.99813 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99845 * 186.26853 * 7 2 1 9 9 C 1.41275 * 120.00203 * 6.27181 * 7 2 1 10 10 C 1.40717 * 120.15899 * 173.75461 * 9 7 2 11 11 N 1.31903 * 119.92784 * 179.97438 * 10 9 7 12 12 C 1.32155 * 120.27225 * 359.72588 * 11 10 9 13 13 C 1.39918 * 120.32234 * 0.53039 * 12 11 10 14 14 N 1.38823 * 119.97258 * 179.74830 * 13 12 11 15 15 C 1.46505 * 119.99850 * 359.72549 * 14 13 12 16 16 C 1.50696 * 109.47336 * 179.97438 * 15 14 13 17 17 C 1.38671 * 120.42166 * 260.25998 * 16 15 14 18 18 C 1.38624 * 118.42330 * 180.30868 * 17 16 15 19 19 C 1.38220 * 119.16204 * 359.43452 * 18 17 16 20 20 N 1.31863 * 120.76226 * 0.29502 * 19 18 17 21 21 C 1.31875 * 121.72483 * 359.97438 * 20 19 18 22 22 C 1.50697 * 119.61836 * 179.97438 * 21 20 19 23 23 C 1.53122 * 109.52150 * 59.87324 * 22 21 20 24 24 C 1.53043 * 109.27450 * 182.50678 * 23 22 21 25 25 N 1.46847 * 109.57940 * 59.08116 * 24 23 22 26 26 C 1.46845 * 111.19876 * 298.29172 * 25 24 23 27 27 C 1.53040 * 109.52227 * 61.73730 * 26 25 24 28 28 N 1.32268 * 120.06113 * 359.47232 * 13 12 11 29 29 H 0.97004 * 120.00062 * 0.02562 * 1 2 3 30 30 H 1.07997 * 120.03645 * 359.94961 * 10 9 7 31 31 H 1.08000 * 119.83818 * 180.25672 * 12 11 10 32 32 H 0.96996 * 120.00326 * 179.72357 * 14 13 12 33 33 H 1.08995 * 109.47161 * 59.99884 * 15 14 13 34 34 H 1.09000 * 109.46883 * 300.00090 * 15 14 13 35 35 H 1.08011 * 120.78827 * 0.02562 * 17 16 15 36 36 H 1.08005 * 120.42331 * 179.71006 * 18 17 16 37 37 H 1.08004 * 119.62292 * 180.28153 * 19 18 17 38 38 H 1.09002 * 109.52715 * 179.97438 * 22 21 20 39 39 H 1.08998 * 109.50358 * 302.38112 * 23 22 21 40 40 H 1.09000 * 109.50410 * 62.50141 * 23 22 21 41 41 H 1.09005 * 109.41077 * 299.06497 * 24 23 22 42 42 H 1.09002 * 109.46052 * 179.13177 * 24 23 22 43 43 H 1.00899 * 110.99617 * 62.38801 * 25 24 23 44 44 H 1.09002 * 109.45891 * 301.72580 * 26 25 24 45 45 H 1.08996 * 109.46567 * 181.75248 * 26 25 24 46 46 H 1.09001 * 109.50250 * 180.88360 * 27 26 25 47 47 H 1.09005 * 109.53670 * 60.78472 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 3.0951 1.6963 -1.2125 5 1 1.2764 2.7465 -0.0006 6 1 3.0951 1.6963 1.2125 7 6 2.0075 -1.2129 -0.0005 8 1 3.0827 -1.2158 0.1016 9 6 1.3074 -2.4327 -0.1347 10 6 2.0140 -3.6424 -0.2677 11 7 1.3557 -4.7786 -0.3922 12 6 0.0342 -4.7870 -0.3872 13 6 -0.6793 -3.5901 -0.2611 14 7 -2.0674 -3.6068 -0.2620 15 6 -2.7846 -4.8767 -0.4011 16 6 -4.2694 -4.6210 -0.3714 17 6 -4.9946 -4.8289 0.7921 18 6 -6.3594 -4.5869 0.7711 19 6 -6.9459 -4.1380 -0.3972 20 7 -6.2240 -3.9458 -1.4838 21 6 -4.9247 -4.1709 -1.5018 22 6 -4.1456 -3.9358 -2.7702 23 6 -4.2799 -2.4691 -3.1887 24 6 -3.5389 -2.2509 -4.5099 25 7 -4.1050 -3.1283 -5.5424 26 6 -3.9439 -4.5431 -5.1836 27 6 -4.6983 -4.8301 -3.8834 28 7 -0.0325 -2.4432 -0.1355 29 1 -0.4850 0.8401 -0.0004 30 1 3.0939 -3.6404 -0.2681 31 1 -0.4976 -5.7219 -0.4855 32 1 -2.5625 -2.7777 -0.1706 33 1 -2.5139 -5.5388 0.4212 34 1 -2.5149 -5.3444 -1.3480 35 1 -4.5084 -5.1758 1.6921 36 1 -6.9562 -4.7427 1.6577 37 1 -8.0079 -3.9427 -0.4206 38 1 -3.0948 -4.1713 -2.6013 39 1 -5.3337 -2.2227 -3.3187 40 1 -3.8484 -1.8298 -2.4185 41 1 -2.4824 -2.4831 -4.3754 42 1 -3.6455 -1.2109 -4.8187 43 1 -5.0744 -2.9067 -5.7133 44 1 -2.8856 -4.7645 -5.0459 45 1 -4.3448 -5.1681 -5.9816 46 1 -4.5656 -5.8766 -3.6090 47 1 -5.7592 -4.6225 -4.0240 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156000198.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:11 Heat of formation + Delta-G solvation = 74.640097 kcal Electronic energy + Delta-G solvation = -29495.875159 eV Core-core repulsion = 25677.636776 eV Total energy + Delta-G solvation = -3818.238383 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.80863 -38.88636 -38.42960 -35.81834 -33.93689 -33.42723 -32.71372 -31.39520 -30.83125 -30.15300 -28.87294 -25.89478 -25.80808 -24.71312 -22.89179 -22.69661 -22.25794 -21.70787 -20.88123 -20.11180 -17.54732 -17.10122 -16.80588 -16.63384 -15.53449 -15.41813 -15.10086 -14.95512 -14.66511 -14.62965 -14.29389 -14.18029 -14.14550 -13.73388 -13.53812 -13.18612 -12.98210 -12.95542 -12.55026 -12.25486 -12.23762 -11.93793 -11.52156 -11.39214 -11.30443 -11.19119 -11.15844 -10.71634 -10.58257 -10.56371 -10.43923 -9.91637 -9.84890 -9.66156 -9.47793 -9.40008 -8.95953 -8.39455 -8.37391 -7.40605 -6.76383 -6.46660 -4.67641 0.93863 1.16821 2.69786 3.02866 3.04780 3.11030 3.26448 3.57321 3.86233 4.11453 4.19448 4.31885 4.48910 4.67402 4.70195 4.73519 4.90433 4.92158 4.98975 5.12289 5.19244 5.35050 5.43144 5.43781 5.55689 5.58090 5.73773 5.77890 5.81557 5.86279 5.90424 5.99763 6.01010 6.06261 6.10284 6.16192 6.24726 6.29661 6.38523 6.49664 6.60162 6.75855 6.99553 7.01700 7.10616 7.36055 7.56970 7.89022 7.90997 8.01829 8.38607 8.53976 8.82667 9.39795 9.98194 10.16912 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.010105 B = 0.003593 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2770.157037 B = 7791.926530 C = 8396.425250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.709 5.709 2 C 0.069 3.931 3 Si 0.909 3.091 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.416 4.416 8 H 0.090 0.910 9 C 0.246 3.754 10 C -0.106 4.106 11 N -0.407 5.407 12 C -0.171 4.171 13 C 0.374 3.626 14 N -0.726 5.726 15 C 0.183 3.817 16 C -0.145 4.145 17 C -0.055 4.055 18 C -0.182 4.182 19 C 0.101 3.899 20 N -0.481 5.481 21 C 0.157 3.843 22 C -0.042 4.042 23 C -0.139 4.139 24 C 0.057 3.943 25 N -0.685 5.685 26 C 0.057 3.943 27 C -0.143 4.143 28 N -0.507 5.507 29 H 0.274 0.726 30 H 0.129 0.871 31 H 0.118 0.882 32 H 0.396 0.604 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.136 0.864 36 H 0.133 0.867 37 H 0.153 0.847 38 H 0.097 0.903 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.076 0.924 42 H 0.075 0.925 43 H 0.338 0.662 44 H 0.074 0.926 45 H 0.074 0.926 46 H 0.063 0.937 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.232 -5.064 -3.163 15.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.330 5.330 2 C -0.157 4.157 3 Si 0.733 3.267 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.449 4.449 8 H 0.108 0.892 9 C 0.118 3.882 10 C -0.276 4.276 11 N -0.119 5.119 12 C -0.333 4.333 13 C 0.131 3.869 14 N -0.364 5.364 15 C 0.057 3.943 16 C -0.148 4.148 17 C -0.081 4.081 18 C -0.202 4.202 19 C -0.056 4.056 20 N -0.189 5.189 21 C 0.019 3.981 22 C -0.061 4.061 23 C -0.179 4.179 24 C -0.072 4.072 25 N -0.313 5.313 26 C -0.073 4.073 27 C -0.183 4.183 28 N -0.233 5.233 29 H 0.085 0.915 30 H 0.147 0.853 31 H 0.136 0.864 32 H 0.231 0.769 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.154 0.846 36 H 0.151 0.849 37 H 0.170 0.830 38 H 0.115 0.885 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.095 0.905 42 H 0.094 0.906 43 H 0.155 0.845 44 H 0.093 0.907 45 H 0.092 0.908 46 H 0.082 0.918 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -14.303 -4.850 -4.358 15.720 hybrid contribution -0.300 0.629 1.875 2.001 sum -14.604 -4.221 -2.483 15.403 Atomic orbital electron populations 1.70093 1.07333 1.28085 1.27448 1.26108 0.94921 1.01249 0.93461 0.86350 0.80127 0.80109 0.80100 1.18711 1.20221 1.18789 1.19594 0.94906 0.89290 1.41071 0.89231 1.19073 0.87661 0.93174 0.88260 1.22909 0.98966 0.89354 1.16418 1.67500 1.08224 1.30156 1.05971 1.21885 0.90765 0.95691 1.24929 1.19458 0.84742 0.92055 0.90669 1.44066 1.02509 1.07117 1.82690 1.19904 0.85246 0.87598 1.01549 1.20816 0.97086 1.02428 0.94447 1.21569 0.93876 0.95146 0.97553 1.22102 0.95610 1.02491 1.00001 1.22737 0.99927 0.94644 0.88333 1.67456 1.06833 1.15418 1.29223 1.21106 0.89806 0.92593 0.94626 1.20287 0.99127 0.96468 0.90200 1.22171 1.01416 0.95020 0.99294 1.22024 0.99479 0.97070 0.88675 1.60674 1.23165 1.03401 1.44047 1.22028 1.00892 0.89444 0.94941 1.22242 1.00822 0.99424 0.95797 1.69028 1.08318 1.22289 1.23652 0.91473 0.85308 0.86427 0.76930 0.91819 0.91519 0.84615 0.84874 0.82959 0.88525 0.91389 0.91134 0.90503 0.90615 0.84527 0.90727 0.90772 0.91805 0.91120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.00 11.51 55.55 0.64 -17.36 16 2 C 0.07 1.69 5.49 -17.34 -0.10 1.59 16 3 Si 0.91 17.91 29.56 -169.99 -5.03 12.88 16 4 H -0.26 -5.13 7.11 56.52 0.40 -4.72 16 5 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 6 H -0.26 -5.11 7.11 56.52 0.40 -4.70 16 7 C -0.42 -10.73 9.15 -37.75 -0.35 -11.07 16 8 H 0.09 2.13 7.86 -52.48 -0.41 1.72 16 9 C 0.25 6.64 6.54 -84.83 -0.55 6.09 16 10 C -0.11 -2.71 10.97 -16.59 -0.18 -2.89 16 11 N -0.41 -10.23 10.47 -12.11 -0.13 -10.36 16 12 C -0.17 -4.00 10.49 -16.78 -0.18 -4.18 16 13 C 0.37 8.74 7.66 -155.01 -1.19 7.55 16 14 N -0.73 -13.58 5.57 -61.46 -0.34 -13.92 16 15 C 0.18 2.69 4.15 -5.19 -0.02 2.67 16 16 C -0.15 -1.91 5.27 -104.48 -0.55 -2.46 16 17 C -0.06 -0.63 9.82 -39.28 -0.39 -1.02 16 18 C -0.18 -1.81 10.11 -39.45 -0.40 -2.21 16 19 C 0.10 1.08 11.18 -17.54 -0.20 0.88 16 20 N -0.48 -6.19 9.73 -9.47 -0.09 -6.28 16 21 C 0.16 2.08 5.47 -82.59 -0.45 1.63 16 22 C -0.04 -0.54 2.30 -91.65 -0.21 -0.75 16 23 C -0.14 -1.84 5.29 -26.65 -0.14 -1.98 16 24 C 0.06 0.74 6.55 -3.83 -0.03 0.71 16 25 N -0.68 -7.94 6.87 -113.81 -0.78 -8.73 16 26 C 0.06 0.63 6.55 -3.83 -0.03 0.60 16 27 C -0.14 -1.62 5.28 -26.65 -0.14 -1.76 16 28 N -0.51 -13.44 8.10 -10.14 -0.08 -13.52 16 29 H 0.27 6.35 8.29 -40.82 -0.34 6.02 16 30 H 0.13 3.01 8.06 -52.49 -0.42 2.59 16 31 H 0.12 2.42 6.70 -52.49 -0.35 2.07 16 32 H 0.40 7.67 8.59 -40.82 -0.35 7.32 16 33 H 0.06 0.91 7.81 -51.93 -0.41 0.50 16 34 H 0.07 0.98 6.51 -51.93 -0.34 0.64 16 35 H 0.14 1.36 8.06 -52.48 -0.42 0.93 16 36 H 0.13 0.96 8.06 -52.48 -0.42 0.53 16 37 H 0.15 1.19 8.06 -52.48 -0.42 0.77 16 38 H 0.10 1.43 5.57 -51.93 -0.29 1.14 16 39 H 0.07 0.89 7.98 -51.93 -0.41 0.47 16 40 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 41 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.34 3.46 8.86 -39.29 -0.35 3.11 16 44 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 46 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.07 0.82 7.98 -51.93 -0.41 0.40 16 LS Contribution 382.63 15.07 5.77 5.77 Total: -1.00 -29.57 382.63 -11.82 -41.39 By element: Atomic # 1 Polarization: 23.43 SS G_CDS: -6.69 Total: 16.74 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: -5.09 Total: -6.60 kcal Atomic # 7 Polarization: -69.39 SS G_CDS: -0.79 Total: -70.18 kcal Atomic # 14 Polarization: 17.91 SS G_CDS: -5.03 Total: 12.88 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -29.57 -11.82 -41.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156000198.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.028 kcal (2) G-P(sol) polarization free energy of solvation -29.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds