Wall clock time and date at job start Tue Mar 31 2020 23:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30723 * 1 3 3 Si 1.86801 * 120.00346 * 2 1 4 4 H 1.48500 * 109.47202 * 239.99947 * 3 2 1 5 5 H 1.48504 * 109.47164 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47193 * 120.00101 * 3 2 1 7 7 C 1.40057 * 119.99813 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99845 * 186.26853 * 7 2 1 9 9 C 1.41275 * 120.00203 * 6.27181 * 7 2 1 10 10 C 1.40717 * 120.15899 * 173.75461 * 9 7 2 11 11 N 1.31903 * 119.92784 * 179.97438 * 10 9 7 12 12 C 1.32155 * 120.27225 * 359.72588 * 11 10 9 13 13 C 1.39918 * 120.32234 * 0.53039 * 12 11 10 14 14 N 1.38823 * 119.97258 * 179.74830 * 13 12 11 15 15 C 1.46505 * 119.99850 * 359.72549 * 14 13 12 16 16 C 1.50696 * 109.47336 * 179.97438 * 15 14 13 17 17 C 1.38671 * 120.42166 * 260.25998 * 16 15 14 18 18 C 1.38624 * 118.42330 * 180.30868 * 17 16 15 19 19 C 1.38220 * 119.16204 * 359.43452 * 18 17 16 20 20 N 1.31863 * 120.76226 * 0.29502 * 19 18 17 21 21 C 1.31875 * 121.72483 * 359.97438 * 20 19 18 22 22 C 1.50697 * 119.61836 * 179.97438 * 21 20 19 23 23 C 1.53122 * 109.52150 * 59.87324 * 22 21 20 24 24 C 1.53043 * 109.27450 * 182.50678 * 23 22 21 25 25 N 1.46847 * 109.57940 * 59.08116 * 24 23 22 26 26 C 1.46845 * 111.19876 * 298.29172 * 25 24 23 27 27 C 1.53040 * 109.52227 * 61.73730 * 26 25 24 28 28 N 1.32268 * 120.06113 * 359.47232 * 13 12 11 29 29 H 0.97004 * 120.00062 * 0.02562 * 1 2 3 30 30 H 1.07997 * 120.03645 * 359.94961 * 10 9 7 31 31 H 1.08000 * 119.83818 * 180.25672 * 12 11 10 32 32 H 0.96996 * 120.00326 * 179.72357 * 14 13 12 33 33 H 1.08995 * 109.47161 * 59.99884 * 15 14 13 34 34 H 1.09000 * 109.46883 * 300.00090 * 15 14 13 35 35 H 1.08011 * 120.78827 * 0.02562 * 17 16 15 36 36 H 1.08005 * 120.42331 * 179.71006 * 18 17 16 37 37 H 1.08004 * 119.62292 * 180.28153 * 19 18 17 38 38 H 1.09002 * 109.52715 * 179.97438 * 22 21 20 39 39 H 1.08998 * 109.50358 * 302.38112 * 23 22 21 40 40 H 1.09000 * 109.50410 * 62.50141 * 23 22 21 41 41 H 1.09005 * 109.41077 * 299.06497 * 24 23 22 42 42 H 1.09002 * 109.46052 * 179.13177 * 24 23 22 43 43 H 1.00899 * 110.99617 * 62.38801 * 25 24 23 44 44 H 1.09002 * 109.45891 * 301.72580 * 26 25 24 45 45 H 1.08996 * 109.46567 * 181.75248 * 26 25 24 46 46 H 1.09001 * 109.50250 * 180.88360 * 27 26 25 47 47 H 1.09005 * 109.53670 * 60.78472 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 3.0951 1.6963 -1.2125 5 1 1.2764 2.7465 -0.0006 6 1 3.0951 1.6963 1.2125 7 6 2.0075 -1.2129 -0.0005 8 1 3.0827 -1.2158 0.1016 9 6 1.3074 -2.4327 -0.1347 10 6 2.0140 -3.6424 -0.2677 11 7 1.3557 -4.7786 -0.3922 12 6 0.0342 -4.7870 -0.3872 13 6 -0.6793 -3.5901 -0.2611 14 7 -2.0674 -3.6068 -0.2620 15 6 -2.7846 -4.8767 -0.4011 16 6 -4.2694 -4.6210 -0.3714 17 6 -4.9946 -4.8289 0.7921 18 6 -6.3594 -4.5869 0.7711 19 6 -6.9459 -4.1380 -0.3972 20 7 -6.2240 -3.9458 -1.4838 21 6 -4.9247 -4.1709 -1.5018 22 6 -4.1456 -3.9358 -2.7702 23 6 -4.2799 -2.4691 -3.1887 24 6 -3.5389 -2.2509 -4.5099 25 7 -4.1050 -3.1283 -5.5424 26 6 -3.9439 -4.5431 -5.1836 27 6 -4.6983 -4.8301 -3.8834 28 7 -0.0325 -2.4432 -0.1355 29 1 -0.4850 0.8401 -0.0004 30 1 3.0939 -3.6404 -0.2681 31 1 -0.4976 -5.7219 -0.4855 32 1 -2.5625 -2.7777 -0.1706 33 1 -2.5139 -5.5388 0.4212 34 1 -2.5149 -5.3444 -1.3480 35 1 -4.5084 -5.1758 1.6921 36 1 -6.9562 -4.7427 1.6577 37 1 -8.0079 -3.9427 -0.4206 38 1 -3.0948 -4.1713 -2.6013 39 1 -5.3337 -2.2227 -3.3187 40 1 -3.8484 -1.8298 -2.4185 41 1 -2.4824 -2.4831 -4.3754 42 1 -3.6455 -1.2109 -4.8187 43 1 -5.0744 -2.9067 -5.7133 44 1 -2.8856 -4.7645 -5.0459 45 1 -4.3448 -5.1681 -5.9816 46 1 -4.5656 -5.8766 -3.6090 47 1 -5.7592 -4.6225 -4.0240 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156000198.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:10 Heat of formation + Delta-G solvation = 55.441525 kcal Electronic energy + Delta-G solvation = -29496.707672 eV Core-core repulsion = 25677.636776 eV Total energy + Delta-G solvation = -3819.070895 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.78248 -40.72877 -39.40790 -37.26569 -35.79341 -34.41134 -34.09161 -33.07606 -31.84209 -31.34048 -30.39405 -27.75289 -27.09371 -25.66560 -24.34461 -23.88529 -23.57068 -23.00681 -22.33239 -21.12999 -19.39421 -18.52002 -17.89448 -17.69210 -17.17735 -16.81350 -16.69013 -16.36145 -15.90612 -15.64530 -15.49617 -15.41048 -15.23095 -15.06682 -14.82655 -14.67827 -14.12634 -13.97381 -13.93145 -13.34326 -13.26344 -13.24313 -13.14398 -12.96509 -12.92143 -12.54105 -12.22526 -12.20246 -12.05139 -11.77704 -11.59972 -11.57086 -11.37341 -11.33287 -10.78639 -10.42528 -10.22350 -9.88284 -9.36906 -9.31217 -8.50164 -8.32484 -6.63140 0.01632 0.27392 0.85472 1.26894 1.41831 1.53619 1.57807 2.20821 2.44415 2.84025 2.89457 3.19763 3.37093 3.47919 3.64700 3.82275 3.90608 3.93838 4.02703 4.06629 4.14026 4.20906 4.22051 4.36078 4.40234 4.44077 4.46573 4.51128 4.59783 4.68096 4.71781 4.77528 4.84537 4.90071 4.94461 4.97584 5.05079 5.11454 5.13890 5.16081 5.21654 5.27952 5.36730 5.70465 5.73628 5.99611 6.08929 6.21266 6.48149 6.62722 6.66598 6.95909 6.99841 7.47375 8.08701 8.34824 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.010105 B = 0.003593 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2770.157037 B = 7791.926530 C = 8396.425250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.741 5.741 2 C 0.027 3.973 3 Si 0.989 3.011 4 H -0.258 1.258 5 H -0.269 1.269 6 H -0.255 1.255 7 C -0.443 4.443 8 H 0.100 0.900 9 C 0.218 3.782 10 C -0.133 4.133 11 N -0.416 5.416 12 C -0.175 4.175 13 C 0.370 3.630 14 N -0.713 5.713 15 C 0.185 3.815 16 C -0.161 4.161 17 C -0.060 4.060 18 C -0.173 4.173 19 C 0.098 3.902 20 N -0.498 5.498 21 C 0.146 3.854 22 C -0.039 4.039 23 C -0.129 4.129 24 C 0.063 3.937 25 N -0.685 5.685 26 C 0.058 3.942 27 C -0.132 4.132 28 N -0.537 5.537 29 H 0.281 0.719 30 H 0.140 0.860 31 H 0.145 0.855 32 H 0.392 0.608 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.150 0.850 36 H 0.167 0.833 37 H 0.184 0.816 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.044 0.956 41 H 0.050 0.950 42 H 0.081 0.919 43 H 0.349 0.651 44 H 0.059 0.941 45 H 0.095 0.905 46 H 0.068 0.932 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.201 -5.003 -2.879 17.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.362 5.362 2 C -0.197 4.197 3 Si 0.809 3.191 4 H -0.182 1.182 5 H -0.194 1.194 6 H -0.179 1.179 7 C -0.475 4.475 8 H 0.118 0.882 9 C 0.090 3.910 10 C -0.302 4.302 11 N -0.128 5.128 12 C -0.337 4.337 13 C 0.125 3.875 14 N -0.348 5.348 15 C 0.061 3.939 16 C -0.163 4.163 17 C -0.087 4.087 18 C -0.192 4.192 19 C -0.059 4.059 20 N -0.206 5.206 21 C 0.008 3.992 22 C -0.058 4.058 23 C -0.168 4.168 24 C -0.067 4.067 25 N -0.314 5.314 26 C -0.071 4.071 27 C -0.171 4.171 28 N -0.265 5.265 29 H 0.092 0.908 30 H 0.158 0.842 31 H 0.162 0.838 32 H 0.226 0.774 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.167 0.833 36 H 0.185 0.815 37 H 0.201 0.799 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.062 0.938 41 H 0.068 0.932 42 H 0.100 0.900 43 H 0.167 0.833 44 H 0.077 0.923 45 H 0.114 0.886 46 H 0.086 0.914 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -16.291 -4.827 -4.079 17.474 hybrid contribution 0.126 0.523 1.809 1.887 sum -16.166 -4.303 -2.271 16.882 Atomic orbital electron populations 1.70182 1.08986 1.29459 1.27602 1.27032 0.95723 1.04581 0.92379 0.85154 0.78645 0.75039 0.80304 1.18247 1.19381 1.17942 1.20015 0.95693 0.90011 1.41779 0.88208 1.19489 0.88349 0.94187 0.88944 1.23048 0.99607 0.89354 1.18180 1.67502 1.09079 1.30088 1.06100 1.22312 0.90509 0.96792 1.24131 1.19747 0.86479 0.91520 0.89726 1.44190 1.00873 1.08570 1.81202 1.20019 0.86349 0.85755 1.01791 1.20667 0.95879 1.04309 0.95490 1.21835 0.94775 0.94764 0.97288 1.22461 0.95068 1.00723 1.00945 1.23352 1.01250 0.93411 0.87904 1.67467 1.06518 1.16089 1.30549 1.21058 0.90310 0.93278 0.94548 1.20180 0.97972 0.96401 0.91254 1.22048 1.01304 0.94958 0.98531 1.21889 0.97971 0.97740 0.89095 1.60649 1.23967 1.03513 1.43241 1.22047 1.00112 0.89356 0.95611 1.22148 1.00698 0.99197 0.95102 1.69034 1.08545 1.23755 1.25132 0.90847 0.84213 0.83754 0.77417 0.90899 0.91527 0.83265 0.81497 0.79889 0.90898 0.90854 0.93759 0.93170 0.90034 0.83264 0.92279 0.88624 0.91361 0.90805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -38.47 11.51 21.84 0.25 -38.22 16 2 C 0.03 1.31 5.49 85.30 0.47 1.77 16 3 Si 0.99 36.67 29.56 68.60 2.03 38.69 16 4 H -0.26 -9.33 7.11 99.48 0.71 -8.62 16 5 H -0.27 -9.54 7.11 99.48 0.71 -8.83 16 6 H -0.26 -9.08 7.11 99.48 0.71 -8.38 16 7 C -0.44 -23.42 9.15 23.46 0.21 -23.20 16 8 H 0.10 4.84 7.86 -2.91 -0.02 4.82 16 9 C 0.22 12.18 6.54 40.17 0.26 12.44 16 10 C -0.13 -7.02 10.97 85.29 0.94 -6.09 16 11 N -0.42 -21.32 10.47 -192.24 -2.01 -23.33 16 12 C -0.17 -8.27 10.49 85.05 0.89 -7.38 16 13 C 0.37 17.77 7.66 133.36 1.02 18.79 16 14 N -0.71 -27.27 5.57 -348.37 -1.94 -29.21 16 15 C 0.19 5.43 4.15 85.63 0.36 5.79 16 16 C -0.16 -4.10 5.27 -19.77 -0.10 -4.21 16 17 C -0.06 -1.25 9.82 22.47 0.22 -1.03 16 18 C -0.17 -2.87 10.11 22.36 0.23 -2.64 16 19 C 0.10 1.81 11.18 84.68 0.95 2.75 16 20 N -0.50 -11.97 9.73 -183.89 -1.79 -13.75 16 21 C 0.15 3.78 5.47 42.54 0.23 4.01 16 22 C -0.04 -1.02 2.30 -11.46 -0.03 -1.05 16 23 C -0.13 -3.49 5.29 30.65 0.16 -3.33 16 24 C 0.06 1.67 6.55 86.33 0.57 2.24 16 25 N -0.68 -15.54 6.87 -513.99 -3.53 -19.07 16 26 C 0.06 1.25 6.55 86.33 0.57 1.82 16 27 C -0.13 -2.88 5.28 30.65 0.16 -2.72 16 28 N -0.54 -29.52 8.10 -186.01 -1.51 -31.03 16 29 H 0.28 13.21 8.29 -92.71 -0.77 12.44 16 30 H 0.14 6.78 8.06 -2.91 -0.02 6.75 16 31 H 0.15 5.87 6.70 -2.91 -0.02 5.85 16 32 H 0.39 15.69 8.59 -92.71 -0.80 14.90 16 33 H 0.07 2.01 7.81 -2.39 -0.02 2.00 16 34 H 0.07 1.97 6.51 -2.39 -0.02 1.95 16 35 H 0.15 2.63 8.06 -2.90 -0.02 2.61 16 36 H 0.17 1.63 8.06 -2.91 -0.02 1.61 16 37 H 0.18 2.14 8.06 -2.91 -0.02 2.11 16 38 H 0.07 2.25 5.57 -2.39 -0.01 2.24 16 39 H 0.07 1.90 7.98 -2.39 -0.02 1.88 16 40 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 42 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 43 H 0.35 6.68 8.86 -89.70 -0.79 5.89 16 44 H 0.06 1.45 8.14 -2.39 -0.02 1.44 16 45 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 46 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 47 H 0.07 1.59 7.98 -2.38 -0.02 1.57 16 Total: -1.00 -65.73 382.63 -1.97 -67.70 By element: Atomic # 1 Polarization: 50.83 SS G_CDS: -0.58 Total: 50.25 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: 7.10 Total: -2.04 kcal Atomic # 7 Polarization: -144.09 SS G_CDS: -10.52 Total: -154.61 kcal Atomic # 14 Polarization: 36.67 SS G_CDS: 2.03 Total: 38.69 kcal Total: -65.73 -1.97 -67.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156000198.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.143 kcal (2) G-P(sol) polarization free energy of solvation -65.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds