Wall clock time and date at job start Tue Mar 31 2020 23:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46497 * 109.47216 * 2 1 4 4 C 1.36928 * 120.00242 * 84.31997 * 3 2 1 5 5 H 1.07996 * 120.00265 * 32.48670 * 4 3 2 6 6 C 1.38821 * 120.00111 * 212.76356 * 4 3 2 7 7 N 1.31618 * 119.99860 * 10.70091 * 6 4 3 8 8 Si 1.86797 * 120.00001 * 190.70591 * 6 4 3 9 9 H 1.48501 * 109.47147 * 89.99943 * 8 6 4 10 10 H 1.48497 * 109.47315 * 209.99932 * 8 6 4 11 11 H 1.48498 * 109.47314 * 329.99915 * 8 6 4 12 12 C 1.46503 * 119.99769 * 264.32357 * 3 2 1 13 13 H 1.09006 * 109.46980 * 183.66268 * 12 3 2 14 14 C 1.52996 * 109.47535 * 63.65876 * 12 3 2 15 15 C 1.53007 * 109.47016 * 303.65388 * 12 3 2 16 16 N 1.46501 * 109.47092 * 305.00376 * 15 12 3 17 17 C 1.34777 * 119.99854 * 179.97438 * 16 15 12 18 18 O 1.21687 * 119.99731 * 0.02562 * 17 16 15 19 19 C 1.46680 * 120.00136 * 179.97438 * 17 16 15 20 20 C 1.35666 * 126.13000 * 0.02882 * 19 17 16 21 21 N 1.30940 * 114.18976 * 179.97438 * 20 19 17 22 22 C 1.29427 * 117.36405 * 359.97438 * 21 20 19 23 23 C 1.50706 * 124.80150 * 179.97438 * 22 21 20 24 24 C 1.52997 * 109.47289 * 90.02522 * 23 22 21 25 25 C 1.53002 * 109.47258 * 174.99928 * 24 23 22 26 26 C 1.53006 * 109.46983 * 294.99812 * 24 23 22 27 27 S 1.70950 * 110.39159 * 359.72685 * 22 21 20 28 28 H 1.09006 * 109.47231 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47740 * 300.00103 * 1 2 3 30 30 H 1.09002 * 109.47184 * 60.00203 * 1 2 3 31 31 H 1.08998 * 109.47071 * 239.99604 * 2 1 3 32 32 H 1.09002 * 109.47184 * 119.99797 * 2 1 3 33 33 H 0.96996 * 120.00103 * 179.97438 * 7 6 4 34 34 H 1.08995 * 109.47174 * 59.99502 * 14 12 3 35 35 H 1.09000 * 109.47396 * 180.02562 * 14 12 3 36 36 H 1.09005 * 109.46829 * 299.99962 * 14 12 3 37 37 H 1.08996 * 109.46825 * 65.00447 * 15 12 3 38 38 H 1.09003 * 109.47321 * 185.00192 * 15 12 3 39 39 H 0.97000 * 120.00339 * 0.02562 * 16 15 12 40 40 H 1.08000 * 122.90449 * 0.02562 * 20 19 17 41 41 H 1.08995 * 109.46927 * 210.02815 * 23 22 21 42 42 H 1.09002 * 109.46992 * 330.02197 * 23 22 21 43 43 H 1.09000 * 109.47080 * 54.99562 * 24 23 22 44 44 H 1.09005 * 109.46767 * 60.00160 * 25 24 23 45 45 H 1.08990 * 109.47109 * 179.97438 * 25 24 23 46 46 H 1.09001 * 109.47052 * 300.00037 * 25 24 23 47 47 H 1.08997 * 109.47297 * 300.00231 * 26 24 23 48 48 H 1.09000 * 109.46965 * 60.00184 * 26 24 23 49 49 H 1.09002 * 109.46752 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1359 2.0658 1.1800 5 1 2.3890 1.5381 2.0876 6 6 1.9241 3.4374 1.2107 7 7 1.4086 4.0473 0.1645 8 14 2.3709 4.4175 2.7369 9 1 3.7756 4.8872 2.6299 10 1 1.4652 5.5882 2.8561 11 1 2.2271 3.5562 3.9380 12 6 2.3808 2.0299 -1.2626 13 1 2.7805 3.0234 -1.0589 14 6 1.1393 2.1514 -2.1484 15 6 3.4400 1.1915 -1.9810 16 7 4.5802 0.9748 -1.0871 17 6 5.6404 0.2573 -1.5089 18 8 5.6505 -0.2100 -2.6324 19 6 6.7823 0.0408 -0.6141 20 6 6.9021 0.5024 0.6560 21 7 8.0235 0.1696 1.2443 22 6 8.8637 -0.5421 0.5641 23 6 10.1999 -1.0167 1.0745 24 6 10.0344 -2.3824 1.7441 25 6 11.4076 -2.9207 2.1511 26 6 9.1544 -2.2375 2.9874 27 16 8.2403 -0.8734 -0.9928 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.2603 5.0056 0.1861 34 1 0.3848 2.7487 -1.6366 35 1 1.4091 2.6337 -3.0880 36 1 0.7396 1.1580 -2.3521 37 1 3.0119 0.2298 -2.2636 38 1 3.7743 1.7172 -2.8755 39 1 4.5720 1.3470 -0.1914 40 1 6.1382 1.0927 1.1402 41 1 10.8974 -1.1026 0.2414 42 1 10.5868 -0.3009 1.7999 43 1 9.5650 -3.0750 1.0455 44 1 11.8768 -2.2280 2.8497 45 1 11.2896 -3.8933 2.6284 46 1 12.0345 -3.0238 1.2654 47 1 9.6237 -1.5448 3.6860 48 1 8.1762 -1.8540 2.6974 49 1 9.0369 -3.2104 3.4646 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157274141.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:11 Heat of formation + Delta-G solvation = 7.913645 kcal Electronic energy + Delta-G solvation = -27791.067515 eV Core-core repulsion = 24073.086856 eV Total energy + Delta-G solvation = -3717.980659 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.09858 -38.95550 -36.93372 -36.55434 -33.84710 -31.91911 -31.51918 -30.49380 -28.41446 -28.29774 -27.37444 -25.33169 -24.37896 -23.92372 -21.67477 -21.54750 -20.61322 -19.50320 -19.13936 -18.01725 -17.22370 -16.74753 -15.41551 -15.37041 -15.25895 -14.86683 -14.72785 -14.55288 -14.16812 -13.99462 -13.72247 -13.45269 -13.31080 -12.75443 -12.64961 -12.50285 -12.40551 -12.14914 -11.92957 -11.62158 -11.55915 -11.43736 -11.40165 -11.27319 -11.18084 -11.01499 -11.01012 -10.86631 -10.52639 -10.29754 -10.08231 -9.95068 -9.59989 -9.53976 -9.44862 -9.43807 -8.94195 -8.57878 -8.46780 -6.71282 -5.89129 -3.39916 0.28166 1.15305 1.67513 2.52986 3.30315 3.39145 3.39720 3.45269 3.71510 3.92938 4.40002 4.52145 4.58790 4.67681 5.05488 5.09073 5.25035 5.28247 5.29577 5.33276 5.39006 5.40516 5.51658 5.63033 5.67621 5.83800 5.86895 5.99962 6.06327 6.09193 6.13126 6.16601 6.30598 6.43038 6.48561 6.55305 6.69182 6.71206 6.78147 6.95072 6.99585 7.25844 7.52310 7.60628 7.61631 7.74876 7.98828 8.40568 8.55419 9.14714 9.74511 10.30416 11.17239 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012559 B = 0.003147 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2228.975200 B = 8895.877481 C = 9922.640802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.142 3.858 3 N -0.584 5.584 4 C -0.260 4.260 5 H 0.066 0.934 6 C 0.010 3.990 7 N -0.896 5.896 8 Si 0.899 3.101 9 H -0.287 1.287 10 H -0.291 1.291 11 H -0.279 1.279 12 C 0.177 3.823 13 H 0.107 0.893 14 C -0.142 4.142 15 C 0.101 3.899 16 N -0.687 5.687 17 C 0.583 3.417 18 O -0.555 6.555 19 C -0.282 4.282 20 C 0.092 3.908 21 N -0.471 5.471 22 C 0.040 3.960 23 C -0.041 4.041 24 C -0.091 4.091 25 C -0.146 4.146 26 C -0.148 4.148 27 S 0.207 5.793 28 H 0.027 0.973 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.037 0.963 32 H 0.035 0.965 33 H 0.255 0.745 34 H 0.081 0.919 35 H 0.029 0.971 36 H 0.028 0.972 37 H 0.056 0.944 38 H 0.057 0.943 39 H 0.411 0.589 40 H 0.186 0.814 41 H 0.086 0.914 42 H 0.096 0.904 43 H 0.072 0.928 44 H 0.058 0.942 45 H 0.058 0.942 46 H 0.056 0.944 47 H 0.058 0.942 48 H 0.061 0.939 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.537 -10.202 0.524 18.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.016 3.984 3 N -0.306 5.306 4 C -0.390 4.390 5 H 0.083 0.917 6 C -0.189 4.189 7 N -0.539 5.539 8 Si 0.729 3.271 9 H -0.213 1.213 10 H -0.218 1.218 11 H -0.205 1.205 12 C 0.070 3.930 13 H 0.124 0.876 14 C -0.201 4.201 15 C -0.024 4.024 16 N -0.337 5.337 17 C 0.367 3.633 18 O -0.435 6.435 19 C -0.407 4.407 20 C -0.066 4.066 21 N -0.185 5.185 22 C -0.235 4.235 23 C -0.082 4.082 24 C -0.111 4.111 25 C -0.203 4.203 26 C -0.205 4.205 27 S 0.465 5.535 28 H 0.046 0.954 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.100 0.900 35 H 0.048 0.952 36 H 0.047 0.953 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.248 0.752 40 H 0.202 0.798 41 H 0.105 0.895 42 H 0.115 0.885 43 H 0.091 0.909 44 H 0.077 0.923 45 H 0.077 0.923 46 H 0.075 0.925 47 H 0.077 0.923 48 H 0.080 0.920 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 16.012 -10.761 -0.625 19.302 hybrid contribution -0.842 1.420 1.652 2.336 sum 15.170 -9.340 1.027 17.845 Atomic orbital electron populations 1.22385 0.99758 0.98349 1.02087 1.20800 0.91961 0.87622 0.98052 1.43966 1.73888 1.09820 1.02901 1.19164 1.41758 0.90209 0.87841 0.91682 1.25185 0.98482 0.98171 0.97076 1.69928 1.45468 1.09260 1.29244 0.86348 0.77869 0.79827 0.83040 1.21350 1.21757 1.20453 1.20561 0.90857 0.96673 0.84948 0.87575 1.22114 1.00515 0.99475 0.97982 1.22236 0.86753 1.00759 0.92641 1.45743 1.16883 1.52016 1.19079 1.16762 0.81498 0.79344 0.85662 1.90794 1.81191 1.51600 1.19954 1.25885 1.02534 1.11429 1.00807 1.22333 0.95112 0.98801 0.90338 1.66144 1.02681 1.13720 1.35974 1.27456 1.01300 0.99678 0.95063 1.20437 0.88939 0.97737 1.01090 1.21137 0.97069 0.94917 0.97996 1.21829 0.95847 1.01169 1.01488 1.21853 1.00312 1.01423 0.96918 1.83916 1.08783 1.46627 1.14179 0.95381 0.92907 0.93139 0.94500 0.94616 0.93516 0.90009 0.95197 0.95269 0.92600 0.92436 0.75157 0.79763 0.89529 0.88527 0.90927 0.92339 0.92260 0.92500 0.92339 0.91989 0.92856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.19 10.02 37.15 0.37 -2.82 16 2 C 0.14 2.83 5.73 -4.05 -0.02 2.80 16 3 N -0.58 -12.80 1.83 -165.66 -0.30 -13.10 16 4 C -0.26 -6.30 9.51 -15.06 -0.14 -6.44 16 5 H 0.07 1.59 7.85 -52.49 -0.41 1.18 16 6 C 0.01 0.26 5.02 -17.43 -0.09 0.17 16 7 N -0.90 -23.24 9.91 55.49 0.55 -22.69 16 8 Si 0.90 20.20 29.57 -169.99 -5.03 15.18 16 9 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 12 C 0.18 3.72 1.92 -67.93 -0.13 3.59 16 13 H 0.11 2.54 5.96 -51.93 -0.31 2.23 16 14 C -0.14 -2.88 8.23 37.16 0.31 -2.58 16 15 C 0.10 1.93 4.85 -4.04 -0.02 1.91 16 16 N -0.69 -12.47 5.37 -61.62 -0.33 -12.80 16 17 C 0.58 10.59 7.79 -12.85 -0.10 10.49 16 18 O -0.55 -11.51 16.97 5.20 0.09 -11.42 16 19 C -0.28 -4.38 6.48 -37.10 -0.24 -4.62 16 20 C 0.09 1.34 10.93 -18.85 -0.21 1.14 16 21 N -0.47 -6.52 9.74 -11.50 -0.11 -6.63 16 22 C 0.04 0.46 5.88 -13.29 -0.08 0.39 16 23 C -0.04 -0.34 5.27 -27.88 -0.15 -0.49 16 24 C -0.09 -0.71 2.91 -90.62 -0.26 -0.97 16 25 C -0.15 -0.86 9.19 37.16 0.34 -0.52 16 26 C -0.15 -1.35 8.99 37.16 0.33 -1.01 16 27 S 0.21 2.61 23.01 -107.50 -2.47 0.14 16 28 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.05 0.99 6.03 -51.93 -0.31 0.68 16 31 H 0.04 0.71 6.35 -51.93 -0.33 0.38 16 32 H 0.04 0.71 8.09 -51.93 -0.42 0.29 16 33 H 0.25 6.56 8.31 -40.82 -0.34 6.22 16 34 H 0.08 1.90 7.12 -51.93 -0.37 1.53 16 35 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.03 0.55 6.49 -51.93 -0.34 0.22 16 37 H 0.06 1.08 6.75 -51.93 -0.35 0.73 16 38 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.41 7.44 6.80 -40.82 -0.28 7.16 16 40 H 0.19 2.58 7.15 -52.49 -0.38 2.21 16 41 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 45 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 47 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.06 0.71 6.80 -51.93 -0.35 0.35 16 49 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 LS Contribution 401.84 15.07 6.06 6.06 Total: -1.00 -27.69 401.84 -9.69 -37.38 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -8.06 Total: 6.84 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: -0.09 Total: 1.04 kcal Atomic # 7 Polarization: -55.02 SS G_CDS: -0.20 Total: -55.22 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: 0.09 Total: -11.42 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.03 Total: 15.18 kcal Atomic # 16 Polarization: 2.61 SS G_CDS: -2.47 Total: 0.14 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -27.69 -9.69 -37.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157274141.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.298 kcal (2) G-P(sol) polarization free energy of solvation -27.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds