Wall clock time and date at job start Tue Mar 31 2020 23:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46497 * 109.47216 * 2 1 4 4 C 1.36928 * 120.00242 * 84.31997 * 3 2 1 5 5 H 1.07996 * 120.00265 * 32.48670 * 4 3 2 6 6 C 1.38821 * 120.00111 * 212.76356 * 4 3 2 7 7 N 1.31618 * 119.99860 * 10.70091 * 6 4 3 8 8 Si 1.86797 * 120.00001 * 190.70591 * 6 4 3 9 9 H 1.48501 * 109.47147 * 89.99943 * 8 6 4 10 10 H 1.48497 * 109.47315 * 209.99932 * 8 6 4 11 11 H 1.48498 * 109.47314 * 329.99915 * 8 6 4 12 12 C 1.46503 * 119.99769 * 264.32357 * 3 2 1 13 13 H 1.09006 * 109.46980 * 183.66268 * 12 3 2 14 14 C 1.52996 * 109.47535 * 63.65876 * 12 3 2 15 15 C 1.53007 * 109.47016 * 303.65388 * 12 3 2 16 16 N 1.46501 * 109.47092 * 305.00376 * 15 12 3 17 17 C 1.34777 * 119.99854 * 179.97438 * 16 15 12 18 18 O 1.21687 * 119.99731 * 0.02562 * 17 16 15 19 19 C 1.46680 * 120.00136 * 179.97438 * 17 16 15 20 20 C 1.35666 * 126.13000 * 0.02882 * 19 17 16 21 21 N 1.30940 * 114.18976 * 179.97438 * 20 19 17 22 22 C 1.29427 * 117.36405 * 359.97438 * 21 20 19 23 23 C 1.50706 * 124.80150 * 179.97438 * 22 21 20 24 24 C 1.52997 * 109.47289 * 90.02522 * 23 22 21 25 25 C 1.53002 * 109.47258 * 174.99928 * 24 23 22 26 26 C 1.53006 * 109.46983 * 294.99812 * 24 23 22 27 27 S 1.70950 * 110.39159 * 359.72685 * 22 21 20 28 28 H 1.09006 * 109.47231 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47740 * 300.00103 * 1 2 3 30 30 H 1.09002 * 109.47184 * 60.00203 * 1 2 3 31 31 H 1.08998 * 109.47071 * 239.99604 * 2 1 3 32 32 H 1.09002 * 109.47184 * 119.99797 * 2 1 3 33 33 H 0.96996 * 120.00103 * 179.97438 * 7 6 4 34 34 H 1.08995 * 109.47174 * 59.99502 * 14 12 3 35 35 H 1.09000 * 109.47396 * 180.02562 * 14 12 3 36 36 H 1.09005 * 109.46829 * 299.99962 * 14 12 3 37 37 H 1.08996 * 109.46825 * 65.00447 * 15 12 3 38 38 H 1.09003 * 109.47321 * 185.00192 * 15 12 3 39 39 H 0.97000 * 120.00339 * 0.02562 * 16 15 12 40 40 H 1.08000 * 122.90449 * 0.02562 * 20 19 17 41 41 H 1.08995 * 109.46927 * 210.02815 * 23 22 21 42 42 H 1.09002 * 109.46992 * 330.02197 * 23 22 21 43 43 H 1.09000 * 109.47080 * 54.99562 * 24 23 22 44 44 H 1.09005 * 109.46767 * 60.00160 * 25 24 23 45 45 H 1.08990 * 109.47109 * 179.97438 * 25 24 23 46 46 H 1.09001 * 109.47052 * 300.00037 * 25 24 23 47 47 H 1.08997 * 109.47297 * 300.00231 * 26 24 23 48 48 H 1.09000 * 109.46965 * 60.00184 * 26 24 23 49 49 H 1.09002 * 109.46752 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1359 2.0658 1.1800 5 1 2.3890 1.5381 2.0876 6 6 1.9241 3.4374 1.2107 7 7 1.4086 4.0473 0.1645 8 14 2.3709 4.4175 2.7369 9 1 3.7756 4.8872 2.6299 10 1 1.4652 5.5882 2.8561 11 1 2.2271 3.5562 3.9380 12 6 2.3808 2.0299 -1.2626 13 1 2.7805 3.0234 -1.0589 14 6 1.1393 2.1514 -2.1484 15 6 3.4400 1.1915 -1.9810 16 7 4.5802 0.9748 -1.0871 17 6 5.6404 0.2573 -1.5089 18 8 5.6505 -0.2100 -2.6324 19 6 6.7823 0.0408 -0.6141 20 6 6.9021 0.5024 0.6560 21 7 8.0235 0.1696 1.2443 22 6 8.8637 -0.5421 0.5641 23 6 10.1999 -1.0167 1.0745 24 6 10.0344 -2.3824 1.7441 25 6 11.4076 -2.9207 2.1511 26 6 9.1544 -2.2375 2.9874 27 16 8.2403 -0.8734 -0.9928 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.2603 5.0056 0.1861 34 1 0.3848 2.7487 -1.6366 35 1 1.4091 2.6337 -3.0880 36 1 0.7396 1.1580 -2.3521 37 1 3.0119 0.2298 -2.2636 38 1 3.7743 1.7172 -2.8755 39 1 4.5720 1.3470 -0.1914 40 1 6.1382 1.0927 1.1402 41 1 10.8974 -1.1026 0.2414 42 1 10.5868 -0.3009 1.7999 43 1 9.5650 -3.0750 1.0455 44 1 11.8768 -2.2280 2.8497 45 1 11.2896 -3.8933 2.6284 46 1 12.0345 -3.0238 1.2654 47 1 9.6237 -1.5448 3.6860 48 1 8.1762 -1.8540 2.6974 49 1 9.0369 -3.2104 3.4646 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157274141.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:10 Heat of formation + Delta-G solvation = -6.373661 kcal Electronic energy + Delta-G solvation = -27791.687059 eV Core-core repulsion = 24073.086856 eV Total energy + Delta-G solvation = -3718.600203 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.27341 -40.29434 -38.59221 -37.27490 -35.41068 -33.74191 -32.87064 -31.77209 -30.09979 -29.36777 -27.97514 -26.80670 -25.78971 -25.33238 -23.30180 -22.81735 -21.29419 -21.10388 -20.46768 -19.18604 -18.74965 -18.16956 -16.93134 -16.68573 -16.49448 -16.11632 -15.98099 -15.69769 -15.54420 -15.29037 -14.86875 -14.80232 -14.45580 -14.29714 -14.00615 -13.64408 -13.45872 -13.27999 -13.09178 -13.04311 -12.95823 -12.80404 -12.73930 -12.66835 -12.58192 -12.19911 -12.10308 -12.07429 -11.80829 -11.77233 -11.62333 -11.39831 -11.28146 -11.26169 -10.60909 -10.54364 -10.45186 -10.10289 -9.84874 -8.53429 -7.80063 -5.31048 -0.80891 0.10770 0.62612 1.38585 1.49565 1.54273 1.59012 2.12206 2.32168 2.54893 3.01023 3.36365 3.64003 3.77498 3.81962 3.94037 4.01702 4.14369 4.25640 4.34294 4.45898 4.52786 4.65920 4.70272 4.72469 4.82414 4.84346 4.87803 4.90645 4.91103 4.96452 5.04459 5.05245 5.10229 5.14282 5.18091 5.28512 5.33665 5.43402 5.45559 5.48133 5.61147 5.74514 5.78863 5.94855 6.48861 6.53314 6.57605 7.10663 7.26602 7.93305 8.44223 9.23944 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012559 B = 0.003147 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2228.975200 B = 8895.877481 C = 9922.640802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.142 3.858 3 N -0.591 5.591 4 C -0.257 4.257 5 H 0.063 0.937 6 C -0.031 4.031 7 N -0.916 5.916 8 Si 0.951 3.049 9 H -0.286 1.286 10 H -0.302 1.302 11 H -0.276 1.276 12 C 0.183 3.817 13 H 0.077 0.923 14 C -0.131 4.131 15 C 0.114 3.886 16 N -0.688 5.688 17 C 0.587 3.413 18 O -0.585 6.585 19 C -0.319 4.319 20 C 0.102 3.898 21 N -0.493 5.493 22 C 0.059 3.941 23 C -0.044 4.044 24 C -0.088 4.088 25 C -0.142 4.142 26 C -0.148 4.148 27 S 0.234 5.766 28 H 0.057 0.943 29 H 0.030 0.970 30 H 0.042 0.958 31 H 0.047 0.953 32 H 0.037 0.963 33 H 0.248 0.752 34 H 0.051 0.949 35 H 0.044 0.956 36 H 0.040 0.960 37 H 0.056 0.944 38 H 0.060 0.940 39 H 0.411 0.589 40 H 0.184 0.816 41 H 0.114 0.886 42 H 0.104 0.896 43 H 0.071 0.929 44 H 0.062 0.938 45 H 0.062 0.938 46 H 0.069 0.931 47 H 0.059 0.941 48 H 0.035 0.965 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.605 -11.714 0.903 21.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.016 3.984 3 N -0.313 5.313 4 C -0.387 4.387 5 H 0.080 0.920 6 C -0.228 4.228 7 N -0.561 5.561 8 Si 0.781 3.219 9 H -0.213 1.213 10 H -0.229 1.229 11 H -0.201 1.201 12 C 0.076 3.924 13 H 0.095 0.905 14 C -0.190 4.190 15 C -0.012 4.012 16 N -0.337 5.337 17 C 0.373 3.627 18 O -0.468 6.468 19 C -0.443 4.443 20 C -0.057 4.057 21 N -0.207 5.207 22 C -0.215 4.215 23 C -0.085 4.085 24 C -0.108 4.108 25 C -0.199 4.199 26 C -0.205 4.205 27 S 0.493 5.507 28 H 0.076 0.924 29 H 0.049 0.951 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.059 0.941 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.248 0.752 40 H 0.201 0.799 41 H 0.132 0.868 42 H 0.122 0.878 43 H 0.090 0.910 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.088 0.912 47 H 0.078 0.922 48 H 0.054 0.946 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 18.089 -12.296 -0.244 21.874 hybrid contribution -1.404 1.804 1.583 2.781 sum 16.685 -10.492 1.339 19.756 Atomic orbital electron populations 1.22258 0.98993 0.99795 1.00557 1.20863 0.92480 0.86450 0.98611 1.44050 1.74249 1.10402 1.02585 1.19302 1.40568 0.90370 0.88498 0.91975 1.25680 0.99168 0.99015 0.98924 1.70070 1.46782 1.08778 1.30427 0.85523 0.77164 0.78263 0.80907 1.21261 1.22946 1.20124 1.20388 0.91507 0.95538 0.84938 0.90476 1.21955 0.99367 0.99648 0.98073 1.21984 0.86530 1.00190 0.92491 1.45697 1.16916 1.52229 1.18871 1.16994 0.81778 0.78391 0.85522 1.90765 1.81870 1.52873 1.21277 1.25660 1.03380 1.14225 1.01054 1.22373 0.95356 0.97971 0.89994 1.66230 1.02917 1.15202 1.36367 1.28146 1.01696 0.97319 0.94333 1.20719 0.87367 0.98073 1.02335 1.21135 0.98053 0.94462 0.97153 1.21797 0.94578 1.01289 1.02235 1.21854 0.99221 1.01690 0.97774 1.83772 1.07003 1.45665 1.14269 0.92423 0.95125 0.93874 0.93437 0.94474 0.94300 0.93016 0.93741 0.94105 0.92601 0.92213 0.75191 0.79949 0.86772 0.87798 0.91043 0.91885 0.91924 0.91168 0.92225 0.94599 0.92159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.85 10.02 71.98 0.72 -5.13 16 2 C 0.14 5.52 5.73 86.38 0.50 6.01 16 3 N -0.59 -25.92 1.83 -678.04 -1.24 -27.17 16 4 C -0.26 -12.51 9.51 84.04 0.80 -11.71 16 5 H 0.06 3.03 7.85 -2.91 -0.02 3.01 16 6 C -0.03 -1.55 5.02 84.86 0.43 -1.12 16 7 N -0.92 -48.51 9.91 21.65 0.21 -48.30 16 8 Si 0.95 42.03 29.57 68.60 2.03 44.06 16 9 H -0.29 -12.48 7.11 99.48 0.71 -11.77 16 10 H -0.30 -13.84 7.11 99.48 0.71 -13.14 16 11 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 12 C 0.18 7.77 1.92 44.99 0.09 7.86 16 13 H 0.08 3.78 5.96 -2.38 -0.01 3.76 16 14 C -0.13 -5.34 8.23 71.98 0.59 -4.75 16 15 C 0.11 4.30 4.85 86.38 0.42 4.72 16 16 N -0.69 -25.06 5.37 -467.07 -2.51 -27.57 16 17 C 0.59 21.30 7.79 86.45 0.67 21.97 16 18 O -0.58 -24.19 16.97 -4.31 -0.07 -24.27 16 19 C -0.32 -9.78 6.48 23.88 0.15 -9.62 16 20 C 0.10 2.95 10.93 84.23 0.92 3.87 16 21 N -0.49 -13.13 9.74 -190.30 -1.85 -14.98 16 22 C 0.06 1.27 5.88 88.46 0.52 1.79 16 23 C -0.04 -0.61 5.27 29.85 0.16 -0.45 16 24 C -0.09 -1.13 2.91 -10.79 -0.03 -1.16 16 25 C -0.14 -1.22 9.19 71.98 0.66 -0.55 16 26 C -0.15 -2.47 8.99 71.98 0.65 -1.82 16 27 S 0.23 5.56 23.01 -56.49 -1.30 4.26 16 28 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 29 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.04 1.65 6.03 -2.39 -0.01 1.64 16 31 H 0.05 1.75 6.35 -2.39 -0.02 1.74 16 32 H 0.04 1.43 8.09 -2.39 -0.02 1.41 16 33 H 0.25 13.06 8.31 -92.71 -0.77 12.29 16 34 H 0.05 2.43 7.12 -2.39 -0.02 2.41 16 35 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.04 1.53 6.49 -2.38 -0.02 1.51 16 37 H 0.06 2.12 6.75 -2.39 -0.02 2.11 16 38 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.41 15.05 6.80 -92.71 -0.63 14.42 16 40 H 0.18 5.17 7.15 -2.91 -0.02 5.15 16 41 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.06 0.50 8.14 -2.38 -0.02 0.48 16 45 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 46 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 47 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 48 H 0.03 0.78 6.80 -2.39 -0.02 0.76 16 49 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -59.46 401.84 2.82 -56.64 By element: Atomic # 1 Polarization: 27.10 SS G_CDS: 0.32 Total: 27.42 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: 7.24 Total: 9.90 kcal Atomic # 7 Polarization: -112.63 SS G_CDS: -5.39 Total: -118.02 kcal Atomic # 8 Polarization: -24.19 SS G_CDS: -0.07 Total: -24.27 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Atomic # 16 Polarization: 5.56 SS G_CDS: -1.30 Total: 4.26 kcal Total: -59.46 2.82 -56.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157274141.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.266 kcal (2) G-P(sol) polarization free energy of solvation -59.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds