Wall clock time and date at job start Tue Mar 31 2020 23:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30738 * 1 3 3 Si 1.86797 * 119.99832 * 2 1 4 4 H 1.48495 * 109.47078 * 274.98472 * 3 2 1 5 5 H 1.48495 * 109.47268 * 34.99127 * 3 2 1 6 6 H 1.48506 * 109.46724 * 154.98571 * 3 2 1 7 7 C 1.40057 * 119.99984 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00082 * 186.22390 * 7 2 1 9 9 C 1.41273 * 119.99589 * 6.22942 * 7 2 1 10 10 C 1.40727 * 120.15390 * 173.67076 * 9 7 2 11 11 N 1.31896 * 119.92920 * 179.97438 * 10 9 7 12 12 C 1.32159 * 120.27588 * 0.02562 * 11 10 9 13 13 C 1.39918 * 120.31645 * 359.97438 * 12 11 10 14 14 N 1.38836 * 119.96664 * 179.97438 * 13 12 11 15 15 C 1.46960 * 111.00054 * 123.80034 * 14 13 12 16 16 C 1.53051 * 109.36419 * 176.81121 * 15 14 13 17 17 N 1.46960 * 109.36471 * 58.39753 * 16 15 14 18 18 C 1.46897 * 110.99852 * 176.81295 * 17 16 15 19 19 C 1.50707 * 109.47096 * 293.79902 * 18 17 16 20 20 C 1.38307 * 119.95966 * 90.00111 * 19 18 17 21 21 C 1.38263 * 120.14801 * 180.02562 * 20 19 18 22 22 C 1.38130 * 120.07641 * 359.97438 * 21 20 19 23 23 C 1.38892 * 119.92264 * 359.97438 * 22 21 20 24 24 N 1.39670 * 120.07453 * 180.02562 * 23 22 21 25 25 C 1.38077 * 119.96095 * 269.72842 * 19 18 17 26 26 C 1.46955 * 110.88024 * 300.67994 * 17 16 15 27 27 C 1.46951 * 111.00122 * 359.97438 * 14 13 12 28 28 N 1.32264 * 120.06714 * 0.02562 * 13 12 11 29 29 H 0.96998 * 119.99902 * 359.97438 * 1 2 3 30 30 H 1.07999 * 120.03716 * 0.02562 * 10 9 7 31 31 H 1.07997 * 119.84269 * 179.72033 * 12 11 10 32 32 H 1.09001 * 109.48603 * 296.77549 * 15 14 13 33 33 H 1.09002 * 109.48766 * 56.84126 * 15 14 13 34 34 H 1.09003 * 109.48653 * 298.43554 * 16 15 14 35 35 H 1.08997 * 109.49195 * 178.36943 * 16 15 14 36 36 H 1.08999 * 109.47275 * 53.79940 * 18 17 16 37 37 H 1.08998 * 109.46871 * 173.79976 * 18 17 16 38 38 H 1.08004 * 119.92611 * 0.02562 * 20 19 18 39 39 H 1.08003 * 119.96157 * 180.02562 * 21 20 19 40 40 H 1.07994 * 120.03947 * 180.02562 * 22 21 20 41 41 H 0.97001 * 120.00075 * 359.97438 * 24 23 22 42 42 H 0.97006 * 119.99948 * 180.02562 * 24 23 22 43 43 H 1.07997 * 120.04368 * 0.02562 * 25 19 18 44 44 H 1.08997 * 109.49219 * 299.35072 * 26 17 16 45 45 H 1.08998 * 109.48713 * 179.28413 * 26 17 16 46 46 H 1.08997 * 109.49047 * 303.16228 * 27 14 13 47 47 H 1.09007 * 109.48735 * 63.19951 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 2.3834 2.1072 -1.3947 5 1 1.4955 2.6199 0.8028 6 1 3.5876 1.4120 0.5921 7 6 2.0077 -1.2129 -0.0005 8 1 3.0829 -1.2158 0.1009 9 6 1.3075 -2.4327 -0.1339 10 6 2.0139 -3.6423 -0.2686 11 7 1.3557 -4.7785 -0.3922 12 6 0.0342 -4.7866 -0.3907 13 6 -0.6792 -3.5903 -0.2575 14 7 -2.0675 -3.6072 -0.2574 15 6 -2.6017 -2.9803 0.9597 16 6 -4.1300 -2.9473 0.8847 17 7 -4.6401 -4.3173 0.7339 18 6 -6.1090 -4.3350 0.7339 19 6 -6.6164 -3.9142 2.0892 20 6 -6.8628 -2.5785 2.3502 21 6 -7.3279 -2.1880 3.5923 22 6 -7.5485 -3.1314 4.5769 23 6 -7.3031 -4.4736 4.3177 24 7 -7.5256 -5.4303 5.3107 25 6 -6.8401 -4.8631 3.0669 26 6 -4.1059 -4.9441 -0.4832 27 6 -2.5776 -4.9770 -0.4087 28 7 -0.0324 -2.4434 -0.1326 29 1 -0.4850 0.8400 0.0004 30 1 3.0939 -3.6403 -0.2699 31 1 -0.4977 -5.7205 -0.4970 32 1 -2.2928 -3.5571 1.8315 33 1 -2.2196 -1.9628 1.0424 34 1 -4.4392 -2.3479 0.0284 35 1 -4.5297 -2.5090 1.7991 36 1 -6.4808 -3.6450 -0.0236 37 1 -6.4601 -5.3426 0.5113 38 1 -6.6916 -1.8388 1.5820 39 1 -7.5197 -1.1442 3.7928 40 1 -7.9122 -2.8257 5.5467 41 1 -7.8515 -5.1575 6.1827 42 1 -7.3535 -6.3674 5.1287 43 1 -6.6513 -5.9063 2.8612 44 1 -4.4149 -4.3673 -1.3550 45 1 -4.4879 -5.9616 -0.5659 46 1 -2.1780 -5.4149 -1.3233 47 1 -2.2680 -5.5769 0.4471 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158482211.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:08 Heat of formation + Delta-G solvation = 94.436649 kcal Electronic energy + Delta-G solvation = -28876.906506 eV Core-core repulsion = 25059.526566 eV Total energy + Delta-G solvation = -3817.379940 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.97241 -39.38179 -38.11302 -35.68720 -34.33515 -33.93185 -31.99686 -31.38225 -30.65300 -29.52277 -28.66195 -27.07631 -25.90500 -24.17173 -23.60286 -22.36186 -21.67183 -21.33692 -20.88714 -19.47087 -17.59208 -17.03480 -16.85714 -16.48196 -15.93607 -15.71603 -15.27004 -14.98694 -14.88765 -14.62577 -14.36798 -14.25332 -13.92711 -13.72739 -13.49491 -13.20590 -13.03650 -12.74710 -12.51145 -12.00692 -11.78442 -11.61779 -11.44843 -11.37209 -11.34262 -11.07771 -10.94337 -10.74632 -10.68989 -10.57544 -10.45146 -10.28341 -9.82598 -9.45858 -9.43002 -8.83838 -8.41918 -8.19310 -7.61626 -7.47233 -7.04165 -6.45237 -4.68720 1.36328 1.58406 2.53449 2.97898 3.03615 3.06874 3.21528 3.67193 3.74539 3.85566 4.22557 4.32621 4.66786 4.70624 4.87498 5.11139 5.12459 5.21375 5.38704 5.39578 5.44016 5.56463 5.56837 5.69240 5.71640 5.83414 5.84853 5.89941 5.93702 5.94829 6.05487 6.18220 6.25255 6.28158 6.38012 6.45708 6.49663 6.58540 6.66547 6.79921 6.81671 6.96673 7.05085 7.14107 7.19426 7.36370 7.50564 7.57734 7.59705 7.92844 8.09225 8.49593 8.71984 9.32058 9.90109 10.14788 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.012784 B = 0.002835 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2189.734411 B = 9874.300639 C =11145.743254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.704 5.704 2 C 0.066 3.934 3 Si 0.911 3.089 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.412 4.412 8 H 0.091 0.909 9 C 0.227 3.773 10 C -0.086 4.086 11 N -0.416 5.416 12 C -0.160 4.160 13 C 0.292 3.708 14 N -0.474 5.474 15 C 0.075 3.925 16 C 0.056 3.944 17 N -0.533 5.533 18 C 0.092 3.908 19 C -0.026 4.026 20 C -0.170 4.170 21 C -0.073 4.073 22 C -0.202 4.202 23 C 0.211 3.789 24 N -0.882 5.882 25 C -0.175 4.175 26 C 0.059 3.941 27 C 0.062 3.938 28 N -0.466 5.466 29 H 0.276 0.724 30 H 0.131 0.869 31 H 0.127 0.873 32 H 0.036 0.964 33 H 0.105 0.895 34 H 0.041 0.959 35 H 0.083 0.917 36 H 0.043 0.957 37 H 0.080 0.920 38 H 0.117 0.883 39 H 0.119 0.881 40 H 0.115 0.885 41 H 0.396 0.604 42 H 0.397 0.603 43 H 0.119 0.881 44 H 0.042 0.958 45 H 0.078 0.922 46 H 0.083 0.917 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.906 -4.746 6.411 18.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.324 5.324 2 C -0.161 4.161 3 Si 0.735 3.265 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.183 1.183 7 C -0.444 4.444 8 H 0.109 0.891 9 C 0.099 3.901 10 C -0.257 4.257 11 N -0.128 5.128 12 C -0.320 4.320 13 C 0.050 3.950 14 N -0.192 5.192 15 C -0.051 4.051 16 C -0.072 4.072 17 N -0.258 5.258 18 C -0.035 4.035 19 C -0.027 4.027 20 C -0.191 4.191 21 C -0.091 4.091 22 C -0.224 4.224 23 C 0.107 3.893 24 N -0.421 5.421 25 C -0.198 4.198 26 C -0.069 4.069 27 C -0.067 4.067 28 N -0.187 5.187 29 H 0.087 0.913 30 H 0.149 0.851 31 H 0.144 0.856 32 H 0.055 0.945 33 H 0.123 0.877 34 H 0.060 0.940 35 H 0.101 0.899 36 H 0.062 0.938 37 H 0.098 0.902 38 H 0.135 0.865 39 H 0.137 0.863 40 H 0.133 0.867 41 H 0.223 0.777 42 H 0.225 0.775 43 H 0.137 0.863 44 H 0.060 0.940 45 H 0.097 0.903 46 H 0.102 0.898 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -17.165 -4.592 6.374 18.878 hybrid contribution 0.284 0.531 0.117 0.614 sum -16.881 -4.061 6.491 18.536 Atomic orbital electron populations 1.70102 1.07264 1.28199 1.26831 1.26138 0.94983 1.01329 0.93604 0.86243 0.80561 0.80505 0.79198 1.19361 1.19999 1.18329 1.19636 0.94960 0.89192 1.40617 0.89102 1.19242 0.88136 0.93385 0.89304 1.23049 0.99116 0.89493 1.14010 1.67553 1.08539 1.30171 1.06542 1.22604 0.91076 0.96439 1.21898 1.20647 0.88705 0.91606 0.94070 1.58499 1.05744 1.17743 1.37247 1.22106 0.92508 1.01567 0.88959 1.22325 0.95207 0.88362 1.01296 1.62206 1.06056 1.19819 1.37752 1.21031 0.88144 1.01173 0.93152 1.19452 0.95415 0.92949 0.94906 1.20850 1.05108 0.95359 0.97757 1.20830 0.96739 0.98771 0.92804 1.20532 1.10047 0.91459 1.00408 1.17764 0.93533 0.89192 0.88805 1.42445 1.77017 1.08183 1.14431 1.20389 1.07502 0.99590 0.92336 1.22190 0.94811 0.99101 0.90775 1.22211 0.93341 0.89268 1.01848 1.69176 1.07963 1.22211 1.19381 0.91312 0.85107 0.85567 0.94527 0.87719 0.94025 0.89852 0.93850 0.90176 0.86513 0.86277 0.86680 0.77674 0.77541 0.86348 0.93974 0.90348 0.89825 0.93200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -17.96 11.51 55.55 0.64 -17.32 16 2 C 0.07 1.62 5.49 -17.34 -0.10 1.53 16 3 Si 0.91 17.92 29.56 -169.99 -5.03 12.89 16 4 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 5 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 6 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 7 C -0.41 -10.66 9.15 -37.75 -0.35 -11.00 16 8 H 0.09 2.17 7.85 -52.49 -0.41 1.75 16 9 C 0.23 6.20 6.54 -84.83 -0.55 5.64 16 10 C -0.09 -2.23 10.97 -16.58 -0.18 -2.41 16 11 N -0.42 -10.67 10.47 -12.11 -0.13 -10.79 16 12 C -0.16 -3.86 10.00 -16.78 -0.17 -4.03 16 13 C 0.29 7.18 6.45 -155.00 -1.00 6.18 16 14 N -0.47 -9.84 4.78 -172.88 -0.83 -10.67 16 15 C 0.08 1.47 5.47 -3.77 -0.02 1.45 16 16 C 0.06 0.88 5.25 -3.77 -0.02 0.86 16 17 N -0.53 -7.43 4.70 -235.91 -1.11 -8.54 16 18 C 0.09 1.06 5.12 -4.97 -0.03 1.04 16 19 C -0.03 -0.31 4.89 -104.65 -0.51 -0.82 16 20 C -0.17 -1.96 7.91 -39.55 -0.31 -2.28 16 21 C -0.07 -0.78 10.04 -39.61 -0.40 -1.17 16 22 C -0.20 -2.08 9.90 -39.38 -0.39 -2.47 16 23 C 0.21 2.19 6.75 -83.78 -0.57 1.62 16 24 N -0.88 -6.51 9.09 32.41 0.29 -6.21 16 25 C -0.18 -1.96 9.55 -39.38 -0.38 -2.34 16 26 C 0.06 0.81 5.61 -3.77 -0.02 0.79 16 27 C 0.06 1.04 4.29 -3.77 -0.02 1.02 16 28 N -0.47 -12.69 7.42 -10.14 -0.08 -12.76 16 29 H 0.28 6.38 8.29 -40.82 -0.34 6.04 16 30 H 0.13 3.06 8.06 -52.49 -0.42 2.64 16 31 H 0.13 2.70 5.78 -52.49 -0.30 2.39 16 32 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.10 2.33 7.68 -51.93 -0.40 1.94 16 34 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.08 1.25 5.95 -51.93 -0.31 0.95 16 36 H 0.04 0.49 8.06 -51.93 -0.42 0.07 16 37 H 0.08 0.80 7.97 -51.93 -0.41 0.39 16 38 H 0.12 1.28 7.99 -52.48 -0.42 0.86 16 39 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 40 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 41 H 0.40 2.20 8.84 -40.82 -0.36 1.84 16 42 H 0.40 2.37 8.84 -40.82 -0.36 2.01 16 43 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 44 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.08 0.88 8.07 -51.93 -0.42 0.46 16 46 H 0.08 1.37 7.15 -51.93 -0.37 1.00 16 47 H 0.05 0.87 7.57 -51.93 -0.39 0.47 16 LS Contribution 378.93 15.07 5.71 5.71 Total: -1.00 -30.75 378.93 -12.19 -42.95 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: -6.67 Total: 11.13 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: -5.00 Total: -6.38 kcal Atomic # 7 Polarization: -65.09 SS G_CDS: -1.20 Total: -66.30 kcal Atomic # 14 Polarization: 17.92 SS G_CDS: -5.03 Total: 12.89 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.75 -12.19 -42.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158482211.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.382 kcal (2) G-P(sol) polarization free energy of solvation -30.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds