Wall clock time and date at job start Tue Mar 31 2020 23:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30738 * 1 3 3 Si 1.86797 * 119.99832 * 2 1 4 4 H 1.48495 * 109.47078 * 274.98472 * 3 2 1 5 5 H 1.48495 * 109.47268 * 34.99127 * 3 2 1 6 6 H 1.48506 * 109.46724 * 154.98571 * 3 2 1 7 7 C 1.40057 * 119.99984 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00082 * 186.22390 * 7 2 1 9 9 C 1.41273 * 119.99589 * 6.22942 * 7 2 1 10 10 C 1.40727 * 120.15390 * 173.67076 * 9 7 2 11 11 N 1.31896 * 119.92920 * 179.97438 * 10 9 7 12 12 C 1.32159 * 120.27588 * 0.02562 * 11 10 9 13 13 C 1.39918 * 120.31645 * 359.97438 * 12 11 10 14 14 N 1.38836 * 119.96664 * 179.97438 * 13 12 11 15 15 C 1.46960 * 111.00054 * 123.80034 * 14 13 12 16 16 C 1.53051 * 109.36419 * 176.81121 * 15 14 13 17 17 N 1.46960 * 109.36471 * 58.39753 * 16 15 14 18 18 C 1.46897 * 110.99852 * 176.81295 * 17 16 15 19 19 C 1.50707 * 109.47096 * 293.79902 * 18 17 16 20 20 C 1.38307 * 119.95966 * 90.00111 * 19 18 17 21 21 C 1.38263 * 120.14801 * 180.02562 * 20 19 18 22 22 C 1.38130 * 120.07641 * 359.97438 * 21 20 19 23 23 C 1.38892 * 119.92264 * 359.97438 * 22 21 20 24 24 N 1.39670 * 120.07453 * 180.02562 * 23 22 21 25 25 C 1.38077 * 119.96095 * 269.72842 * 19 18 17 26 26 C 1.46955 * 110.88024 * 300.67994 * 17 16 15 27 27 C 1.46951 * 111.00122 * 359.97438 * 14 13 12 28 28 N 1.32264 * 120.06714 * 0.02562 * 13 12 11 29 29 H 0.96998 * 119.99902 * 359.97438 * 1 2 3 30 30 H 1.07999 * 120.03716 * 0.02562 * 10 9 7 31 31 H 1.07997 * 119.84269 * 179.72033 * 12 11 10 32 32 H 1.09001 * 109.48603 * 296.77549 * 15 14 13 33 33 H 1.09002 * 109.48766 * 56.84126 * 15 14 13 34 34 H 1.09003 * 109.48653 * 298.43554 * 16 15 14 35 35 H 1.08997 * 109.49195 * 178.36943 * 16 15 14 36 36 H 1.08999 * 109.47275 * 53.79940 * 18 17 16 37 37 H 1.08998 * 109.46871 * 173.79976 * 18 17 16 38 38 H 1.08004 * 119.92611 * 0.02562 * 20 19 18 39 39 H 1.08003 * 119.96157 * 180.02562 * 21 20 19 40 40 H 1.07994 * 120.03947 * 180.02562 * 22 21 20 41 41 H 0.97001 * 120.00075 * 359.97438 * 24 23 22 42 42 H 0.97006 * 119.99948 * 180.02562 * 24 23 22 43 43 H 1.07997 * 120.04368 * 0.02562 * 25 19 18 44 44 H 1.08997 * 109.49219 * 299.35072 * 26 17 16 45 45 H 1.08998 * 109.48713 * 179.28413 * 26 17 16 46 46 H 1.08997 * 109.49047 * 303.16228 * 27 14 13 47 47 H 1.09007 * 109.48735 * 63.19951 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 2.3834 2.1072 -1.3947 5 1 1.4955 2.6199 0.8028 6 1 3.5876 1.4120 0.5921 7 6 2.0077 -1.2129 -0.0005 8 1 3.0829 -1.2158 0.1009 9 6 1.3075 -2.4327 -0.1339 10 6 2.0139 -3.6423 -0.2686 11 7 1.3557 -4.7785 -0.3922 12 6 0.0342 -4.7866 -0.3907 13 6 -0.6792 -3.5903 -0.2575 14 7 -2.0675 -3.6072 -0.2574 15 6 -2.6017 -2.9803 0.9597 16 6 -4.1300 -2.9473 0.8847 17 7 -4.6401 -4.3173 0.7339 18 6 -6.1090 -4.3350 0.7339 19 6 -6.6164 -3.9142 2.0892 20 6 -6.8628 -2.5785 2.3502 21 6 -7.3279 -2.1880 3.5923 22 6 -7.5485 -3.1314 4.5769 23 6 -7.3031 -4.4736 4.3177 24 7 -7.5256 -5.4303 5.3107 25 6 -6.8401 -4.8631 3.0669 26 6 -4.1059 -4.9441 -0.4832 27 6 -2.5776 -4.9770 -0.4087 28 7 -0.0324 -2.4434 -0.1326 29 1 -0.4850 0.8400 0.0004 30 1 3.0939 -3.6403 -0.2699 31 1 -0.4977 -5.7205 -0.4970 32 1 -2.2928 -3.5571 1.8315 33 1 -2.2196 -1.9628 1.0424 34 1 -4.4392 -2.3479 0.0284 35 1 -4.5297 -2.5090 1.7991 36 1 -6.4808 -3.6450 -0.0236 37 1 -6.4601 -5.3426 0.5113 38 1 -6.6916 -1.8388 1.5820 39 1 -7.5197 -1.1442 3.7928 40 1 -7.9122 -2.8257 5.5467 41 1 -7.8515 -5.1575 6.1827 42 1 -7.3535 -6.3674 5.1287 43 1 -6.6513 -5.9063 2.8612 44 1 -4.4149 -4.3673 -1.3550 45 1 -4.4879 -5.9616 -0.5659 46 1 -2.1780 -5.4149 -1.3233 47 1 -2.2680 -5.5769 0.4471 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158482211.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:07 Heat of formation + Delta-G solvation = 73.448026 kcal Electronic energy + Delta-G solvation = -28877.816641 eV Core-core repulsion = 25059.526566 eV Total energy + Delta-G solvation = -3818.290075 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.47293 -40.51363 -39.51783 -36.97482 -35.86687 -35.16466 -33.69819 -32.58914 -32.05083 -31.14132 -29.49941 -28.36985 -27.71276 -25.35967 -25.14749 -23.55529 -23.19433 -22.85440 -21.81474 -20.88255 -19.44948 -18.24602 -17.74996 -17.54313 -17.44573 -16.99011 -16.75756 -16.61851 -16.09620 -15.99179 -15.77454 -15.58161 -15.08614 -14.91105 -14.79752 -14.46539 -14.28996 -13.91903 -13.67588 -13.44823 -13.34779 -13.03653 -12.92286 -12.82851 -12.61076 -12.38890 -12.25493 -12.09356 -12.05856 -11.87790 -11.70975 -11.57607 -11.42226 -11.35269 -11.21925 -10.27643 -9.67664 -9.41111 -9.30610 -8.86191 -8.34154 -8.32728 -6.66652 0.54156 0.63235 0.77430 1.11716 1.41743 1.53846 1.56939 2.19754 2.65420 2.78181 2.83696 3.08978 3.24743 3.75435 3.83508 3.87299 4.03957 4.06439 4.11255 4.16702 4.26087 4.32757 4.37870 4.40960 4.49365 4.56596 4.58529 4.63116 4.71352 4.79448 4.81990 4.83495 4.89282 5.00468 5.05929 5.08266 5.11506 5.17286 5.18207 5.47537 5.60866 5.69494 5.79351 5.88671 5.99028 6.05195 6.08934 6.15723 6.21951 6.58791 6.67670 6.77544 7.05640 7.35559 7.95634 8.31783 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.012784 B = 0.002835 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2189.734411 B = 9874.300639 C =11145.743254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.736 5.736 2 C 0.022 3.978 3 Si 0.994 3.006 4 H -0.265 1.265 5 H -0.267 1.267 6 H -0.250 1.250 7 C -0.434 4.434 8 H 0.103 0.897 9 C 0.195 3.805 10 C -0.108 4.108 11 N -0.425 5.425 12 C -0.167 4.167 13 C 0.284 3.716 14 N -0.480 5.480 15 C 0.086 3.914 16 C 0.074 3.926 17 N -0.538 5.538 18 C 0.097 3.903 19 C -0.038 4.038 20 C -0.188 4.188 21 C -0.080 4.080 22 C -0.211 4.211 23 C 0.206 3.794 24 N -0.872 5.872 25 C -0.188 4.188 26 C 0.066 3.934 27 C 0.060 3.940 28 N -0.495 5.495 29 H 0.283 0.717 30 H 0.147 0.853 31 H 0.154 0.846 32 H 0.021 0.979 33 H 0.069 0.931 34 H 0.037 0.963 35 H 0.089 0.911 36 H 0.047 0.953 37 H 0.101 0.899 38 H 0.116 0.884 39 H 0.134 0.866 40 H 0.133 0.867 41 H 0.405 0.595 42 H 0.404 0.596 43 H 0.127 0.873 44 H 0.042 0.958 45 H 0.114 0.886 46 H 0.089 0.911 47 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.183 -4.918 6.835 20.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.357 5.357 2 C -0.202 4.202 3 Si 0.813 3.187 4 H -0.190 1.190 5 H -0.191 1.191 6 H -0.174 1.174 7 C -0.466 4.466 8 H 0.121 0.879 9 C 0.068 3.932 10 C -0.277 4.277 11 N -0.137 5.137 12 C -0.328 4.328 13 C 0.042 3.958 14 N -0.199 5.199 15 C -0.041 4.041 16 C -0.055 4.055 17 N -0.263 5.263 18 C -0.030 4.030 19 C -0.039 4.039 20 C -0.209 4.209 21 C -0.099 4.099 22 C -0.234 4.234 23 C 0.100 3.900 24 N -0.412 5.412 25 C -0.212 4.212 26 C -0.061 4.061 27 C -0.068 4.068 28 N -0.218 5.218 29 H 0.094 0.906 30 H 0.164 0.836 31 H 0.171 0.829 32 H 0.039 0.961 33 H 0.087 0.913 34 H 0.056 0.944 35 H 0.107 0.893 36 H 0.065 0.935 37 H 0.119 0.881 38 H 0.134 0.866 39 H 0.152 0.848 40 H 0.150 0.850 41 H 0.235 0.765 42 H 0.234 0.766 43 H 0.145 0.855 44 H 0.060 0.940 45 H 0.132 0.868 46 H 0.107 0.893 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -18.460 -4.810 6.818 20.258 hybrid contribution 0.579 0.514 0.032 0.774 sum -17.881 -4.297 6.850 19.625 Atomic orbital electron populations 1.70199 1.09019 1.29705 1.26771 1.27116 0.95792 1.04796 0.92515 0.85015 0.79222 0.75165 0.79290 1.18962 1.19143 1.17365 1.20074 0.95792 0.89790 1.40915 0.87875 1.19713 0.88730 0.94573 0.90216 1.23255 0.99919 0.89391 1.15165 1.67569 1.09267 1.30125 1.06722 1.23048 0.90896 0.97485 1.21374 1.21068 0.90451 0.91229 0.93094 1.58548 1.03750 1.20285 1.37282 1.21923 0.95107 0.99079 0.87959 1.22070 0.92118 0.89823 1.01449 1.62179 1.07890 1.18212 1.38010 1.21075 0.86078 1.02544 0.93315 1.19543 0.95955 0.93194 0.95223 1.20967 1.06080 0.95522 0.98308 1.21086 0.96366 0.99796 0.92650 1.20805 1.09960 0.91519 1.01142 1.17929 0.93031 0.89822 0.89192 1.42435 1.76200 1.08214 1.14311 1.20554 1.07956 0.99972 0.92671 1.22201 0.92265 1.01092 0.90578 1.22366 0.95701 0.86887 1.01831 1.69169 1.08289 1.23667 1.20637 0.90592 0.83601 0.82871 0.96062 0.91260 0.94448 0.89255 0.93457 0.88082 0.86628 0.84835 0.84958 0.76542 0.76647 0.85507 0.93971 0.86823 0.89289 0.93578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -38.52 11.51 21.84 0.25 -38.27 16 2 C 0.02 1.08 5.49 85.30 0.47 1.55 16 3 Si 0.99 36.57 29.56 68.60 2.03 38.60 16 4 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 5 H -0.27 -9.39 7.11 99.48 0.71 -8.69 16 6 H -0.25 -8.77 7.11 99.48 0.71 -8.06 16 7 C -0.43 -22.93 9.15 23.46 0.21 -22.71 16 8 H 0.10 4.97 7.85 -2.91 -0.02 4.95 16 9 C 0.19 10.99 6.54 40.17 0.26 11.25 16 10 C -0.11 -5.72 10.97 85.29 0.94 -4.79 16 11 N -0.43 -22.08 10.47 -192.23 -2.01 -24.09 16 12 C -0.17 -8.16 10.00 85.05 0.85 -7.31 16 13 C 0.28 14.36 6.45 133.35 0.86 15.22 16 14 N -0.48 -20.23 4.78 -700.86 -3.35 -23.58 16 15 C 0.09 3.48 5.47 86.31 0.47 3.95 16 16 C 0.07 2.30 5.25 86.31 0.45 2.75 16 17 N -0.54 -14.11 4.70 -900.29 -4.23 -18.34 16 18 C 0.10 2.01 5.12 85.56 0.44 2.45 16 19 C -0.04 -0.84 4.89 -19.88 -0.10 -0.94 16 20 C -0.19 -4.19 7.91 22.29 0.18 -4.01 16 21 C -0.08 -1.63 10.04 22.25 0.22 -1.40 16 22 C -0.21 -4.02 9.90 22.40 0.22 -3.80 16 23 C 0.21 3.91 6.75 38.22 0.26 4.17 16 24 N -0.87 -11.05 9.09 -51.37 -0.47 -11.52 16 25 C -0.19 -3.90 9.55 22.40 0.21 -3.68 16 26 C 0.07 1.67 5.61 86.31 0.48 2.15 16 27 C 0.06 1.94 4.29 86.31 0.37 2.31 16 28 N -0.50 -27.99 7.42 -185.99 -1.38 -29.37 16 29 H 0.28 13.35 8.29 -92.71 -0.77 12.59 16 30 H 0.15 6.99 8.06 -2.91 -0.02 6.97 16 31 H 0.15 6.45 5.78 -2.91 -0.02 6.43 16 32 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.07 3.27 7.68 -2.39 -0.02 3.25 16 34 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.09 2.69 5.95 -2.39 -0.01 2.68 16 36 H 0.05 0.97 8.06 -2.39 -0.02 0.95 16 37 H 0.10 1.70 7.97 -2.39 -0.02 1.68 16 38 H 0.12 2.50 7.99 -2.91 -0.02 2.47 16 39 H 0.13 2.18 8.06 -2.91 -0.02 2.16 16 40 H 0.13 1.96 8.06 -2.91 -0.02 1.93 16 41 H 0.41 3.61 8.84 -92.71 -0.82 2.79 16 42 H 0.40 3.97 8.84 -92.70 -0.82 3.15 16 43 H 0.13 2.31 8.06 -2.91 -0.02 2.29 16 44 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.11 2.12 8.07 -2.39 -0.02 2.10 16 46 H 0.09 2.79 7.15 -2.39 -0.02 2.78 16 47 H 0.05 1.55 7.57 -2.38 -0.02 1.53 16 Total: -1.00 -68.20 378.93 -2.99 -71.19 By element: Atomic # 1 Polarization: 38.86 SS G_CDS: -0.63 Total: 38.24 kcal Atomic # 6 Polarization: -9.65 SS G_CDS: 6.80 Total: -2.84 kcal Atomic # 7 Polarization: -133.99 SS G_CDS: -11.19 Total: -145.18 kcal Atomic # 14 Polarization: 36.57 SS G_CDS: 2.03 Total: 38.60 kcal Total: -68.20 -2.99 -71.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158482211.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.638 kcal (2) G-P(sol) polarization free energy of solvation -68.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds