Wall clock time and date at job start Tue Mar 31 2020 23:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30745 * 1 3 3 Si 1.86797 * 120.00124 * 2 1 4 4 H 1.48503 * 109.47310 * 240.00100 * 3 2 1 5 5 H 1.48497 * 109.47137 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47008 * 120.00105 * 3 2 1 7 7 C 1.40041 * 119.99683 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99819 * 191.91369 * 7 2 1 9 9 C 1.41537 * 120.00020 * 11.92339 * 7 2 1 10 10 C 1.41161 * 120.99207 * 206.97092 * 9 7 2 11 11 C 1.37631 * 119.00984 * 179.97438 * 10 9 7 12 12 N 1.32045 * 121.11632 * 359.97438 * 11 10 9 13 13 C 1.32493 * 122.23142 * 359.97438 * 12 11 10 14 14 N 1.39532 * 119.58021 * 180.02562 * 13 12 11 15 15 C 1.36807 * 120.67477 * 179.97438 * 14 13 12 16 16 C 1.34818 * 120.68601 * 180.02562 * 15 14 13 17 17 N 1.33336 * 122.09589 * 0.02562 * 16 15 14 18 18 C 1.30809 * 121.27369 * 359.94387 * 17 16 15 19 19 C 1.38072 * 120.67669 * 359.97438 * 14 13 12 20 20 N 1.31393 * 120.94494 * 359.71112 * 19 14 13 21 21 C 1.46495 * 120.00234 * 173.92668 * 20 19 14 22 22 H 1.09002 * 109.47276 * 353.85627 * 21 20 19 23 23 C 1.52994 * 109.47574 * 113.85736 * 21 20 19 24 24 C 1.53002 * 109.47561 * 179.97438 * 23 21 20 25 25 C 1.53002 * 109.47031 * 300.00319 * 24 23 21 26 26 H 1.08998 * 109.47120 * 299.99387 * 25 24 23 27 27 N 1.46904 * 109.47035 * 179.97438 * 25 24 23 28 28 C 1.53006 * 109.47054 * 59.99721 * 25 24 23 29 29 C 1.52991 * 109.46979 * 299.99778 * 28 25 24 30 30 C 1.38603 * 120.83996 * 0.27222 * 13 12 11 31 31 H 0.96996 * 119.99281 * 0.02562 * 1 2 3 32 32 H 1.07998 * 120.49581 * 0.02562 * 10 9 7 33 33 H 1.08008 * 119.44220 * 180.02562 * 11 10 9 34 34 H 1.07998 * 119.66133 * 0.02562 * 15 14 13 35 35 H 1.07998 * 118.95091 * 179.97438 * 16 15 14 36 36 H 1.08000 * 120.41138 * 180.02562 * 18 17 16 37 37 H 1.08996 * 109.47388 * 300.00268 * 23 21 20 38 38 H 1.08998 * 109.47144 * 60.00117 * 23 21 20 39 39 H 1.08998 * 109.46668 * 59.99983 * 24 23 21 40 40 H 1.08994 * 109.47320 * 179.97438 * 24 23 21 41 41 H 1.00891 * 110.99760 * 179.97438 * 27 25 24 42 42 H 1.00894 * 111.00112 * 303.95774 * 27 25 24 43 43 H 1.09000 * 109.46724 * 60.00087 * 28 25 24 44 44 H 1.08999 * 109.46345 * 179.97438 * 28 25 24 45 45 H 1.09002 * 109.47590 * 300.00286 * 29 28 25 46 46 H 1.09000 * 109.47342 * 179.97438 * 29 28 25 47 47 H 1.08000 * 120.60148 * 179.72001 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.0952 1.6964 -1.2125 5 1 1.2765 2.7464 0.0006 6 1 3.0953 1.6963 1.2125 7 6 2.0076 -1.2128 -0.0005 8 1 3.0701 -1.2230 0.1925 9 6 1.3227 -2.4252 -0.2543 10 6 1.7967 -3.6499 0.2635 11 6 1.0984 -4.8044 -0.0082 12 7 -0.0002 -4.7810 -0.7404 13 6 -0.4870 -3.6584 -1.2485 14 7 -1.6528 -3.6976 -2.0143 15 6 -2.1754 -2.5520 -2.5492 16 6 -3.3020 -2.5896 -3.2887 17 7 -3.9529 -3.7278 -3.5309 18 6 -3.5231 -4.8695 -3.0587 19 6 -2.3025 -4.8934 -2.2475 20 7 -1.8372 -6.0214 -1.7602 21 6 -2.6107 -7.2569 -1.9064 22 1 -3.5826 -7.0276 -2.3435 23 6 -1.8568 -8.2258 -2.8193 24 6 -2.6644 -9.5164 -2.9714 25 6 -2.8617 -10.1594 -1.5972 26 1 -1.8898 -10.3885 -1.1602 27 7 -3.6377 -11.3983 -1.7431 28 6 -3.6158 -9.1904 -0.6842 29 6 -2.8081 -7.9000 -0.5321 30 6 0.1497 -2.4463 -1.0334 31 1 -0.4849 0.8401 -0.0004 32 1 2.6935 -3.6804 0.8645 33 1 1.4546 -5.7452 0.3848 34 1 -1.6802 -1.6077 -2.3774 35 1 -3.6902 -1.6682 -3.6971 36 1 -4.0610 -5.7832 -3.2639 37 1 -1.7158 -7.7676 -3.7981 38 1 -0.8850 -8.4552 -2.3822 39 1 -3.6363 -9.2873 -3.4083 40 1 -2.1274 -10.2065 -3.6221 41 1 -3.7812 -11.8424 -0.8487 42 1 -4.5172 -11.2218 -2.2049 43 1 -4.5877 -8.9615 -1.1212 44 1 -3.7567 -9.6488 0.2946 45 1 -1.8361 -8.1290 -0.0952 46 1 -3.3455 -7.2095 0.1179 47 1 -0.2480 -1.5341 -1.4531 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161294255.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:38:08 Heat of formation + Delta-G solvation = 90.984610 kcal Electronic energy + Delta-G solvation = -29238.074011 eV Core-core repulsion = 25420.544380 eV Total energy + Delta-G solvation = -3817.529632 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.14265 -40.07830 -39.73187 -36.77459 -36.28540 -35.84416 -33.49999 -32.55533 -31.74741 -31.10559 -30.22774 -28.15536 -27.66524 -26.24665 -24.54633 -23.58815 -23.29257 -22.71398 -21.79821 -20.82426 -20.05007 -18.80308 -18.22547 -17.41964 -17.17146 -16.80632 -16.43220 -16.30592 -16.22946 -16.05716 -15.92893 -15.45705 -15.17226 -14.66866 -14.61102 -14.38081 -14.27741 -14.02263 -13.85002 -13.55035 -13.26871 -13.16058 -12.91867 -12.77680 -12.61858 -12.57201 -12.11198 -12.07698 -12.03287 -11.96345 -11.83334 -11.39481 -11.27326 -11.24178 -10.94498 -10.13349 -9.96684 -9.65317 -9.55186 -9.23025 -8.70167 -8.11785 -6.61794 -0.41935 0.76790 0.94748 1.00086 1.40200 1.41411 1.51011 1.56860 2.17846 2.56913 2.82398 3.23023 3.26228 3.52724 3.65805 3.67364 3.72880 3.85360 3.95128 4.20822 4.25541 4.27853 4.32251 4.39542 4.41589 4.54427 4.56921 4.64491 4.68155 4.69903 4.78731 4.84940 4.95407 5.03560 5.09175 5.12338 5.17868 5.21018 5.23710 5.29514 5.39545 5.40361 5.47672 5.75932 5.77811 5.89532 6.24758 6.28218 6.50299 6.66582 6.71588 6.77800 6.85246 7.16177 7.67219 8.24052 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.017282 B = 0.002980 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.814432 B = 9394.075282 C =10599.764659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.041 3.959 3 Si 0.986 3.014 4 H -0.259 1.259 5 H -0.266 1.266 6 H -0.261 1.261 7 C -0.483 4.483 8 H 0.085 0.915 9 C 0.113 3.887 10 C -0.285 4.285 11 C 0.114 3.886 12 N -0.532 5.532 13 C 0.307 3.693 14 N -0.419 5.419 15 C 0.104 3.896 16 C -0.074 4.074 17 N -0.425 5.425 18 C 0.064 3.936 19 C 0.306 3.694 20 N -0.532 5.532 21 C 0.080 3.920 22 H 0.057 0.943 23 C -0.097 4.097 24 C -0.099 4.099 25 C 0.096 3.904 26 H 0.068 0.932 27 N -0.847 5.847 28 C -0.137 4.137 29 C -0.090 4.090 30 C -0.244 4.244 31 H 0.293 0.707 32 H 0.119 0.881 33 H 0.154 0.846 34 H 0.174 0.826 35 H 0.196 0.804 36 H 0.202 0.798 37 H 0.052 0.948 38 H 0.051 0.949 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.348 0.652 42 H 0.347 0.653 43 H 0.071 0.929 44 H 0.070 0.930 45 H 0.052 0.948 46 H 0.040 0.960 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.364 -9.438 -4.341 13.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.176 4.176 3 Si 0.807 3.193 4 H -0.184 1.184 5 H -0.190 1.190 6 H -0.186 1.186 7 C -0.513 4.513 8 H 0.103 0.897 9 C 0.104 3.896 10 C -0.309 4.309 11 C -0.041 4.041 12 N -0.248 5.248 13 C 0.083 3.917 14 N -0.110 5.110 15 C -0.023 4.023 16 C -0.213 4.213 17 N -0.134 5.134 18 C -0.132 4.132 19 C 0.033 3.967 20 N -0.255 5.255 21 C -0.031 4.031 22 H 0.075 0.925 23 C -0.136 4.136 24 C -0.137 4.137 25 C -0.016 4.016 26 H 0.086 0.914 27 N -0.377 5.377 28 C -0.177 4.177 29 C -0.129 4.129 30 C -0.270 4.270 31 H 0.104 0.896 32 H 0.137 0.863 33 H 0.171 0.829 34 H 0.191 0.809 35 H 0.213 0.787 36 H 0.219 0.781 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.161 0.839 42 H 0.160 0.840 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.071 0.929 46 H 0.059 0.941 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -8.296 -10.553 -4.906 14.292 hybrid contribution 0.459 2.259 1.251 2.623 sum -7.837 -8.293 -3.656 11.982 Atomic orbital electron populations 1.69757 1.08881 1.31120 1.34564 1.26772 0.95635 1.04427 0.90780 0.85175 0.78745 0.75334 0.80075 1.18372 1.19003 1.18578 1.19833 0.96787 0.90975 1.43752 0.89661 1.17979 0.90715 0.93565 0.87310 1.22218 1.05305 0.94177 1.09160 1.22270 0.90169 0.97663 0.93963 1.67217 1.15058 1.26788 1.15707 1.18434 0.87320 0.91411 0.94508 1.41343 1.21305 1.05831 1.42495 1.23132 0.95719 0.90600 0.92887 1.21922 0.95132 0.98075 1.06143 1.67545 1.29988 0.98789 1.17054 1.25670 0.93047 0.98060 0.96419 1.21691 0.91166 0.87563 0.96312 1.73137 1.30169 0.97126 1.25092 1.21774 0.95121 0.89671 0.96492 0.92503 1.21424 0.98986 0.95051 0.98109 1.21445 1.00599 0.94936 0.96735 1.21349 0.97026 0.88262 0.94945 0.91371 1.58907 1.25259 1.25255 1.28237 1.22320 0.99249 0.95344 1.00816 1.21278 0.99933 0.96285 0.95423 1.21736 1.01987 0.95591 1.07642 0.89568 0.86334 0.82862 0.80866 0.78735 0.78122 0.92945 0.92982 0.90821 0.90995 0.83861 0.84024 0.90991 0.91101 0.92939 0.94139 0.85077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -38.57 10.87 21.84 0.24 -38.33 16 2 C 0.04 1.87 5.27 85.29 0.45 2.32 16 3 Si 0.99 34.81 29.58 68.60 2.03 36.84 16 4 H -0.26 -8.99 7.11 99.48 0.71 -8.29 16 5 H -0.27 -8.85 7.11 99.48 0.71 -8.14 16 6 H -0.26 -9.09 7.11 99.48 0.71 -8.38 16 7 C -0.48 -24.05 9.13 23.52 0.21 -23.83 16 8 H 0.09 4.06 7.87 -2.91 -0.02 4.03 16 9 C 0.11 5.78 5.58 -21.11 -0.12 5.67 16 10 C -0.29 -13.47 9.90 22.84 0.23 -13.24 16 11 C 0.11 5.16 11.15 84.52 0.94 6.10 16 12 N -0.53 -25.60 7.82 -193.45 -1.51 -27.11 16 13 C 0.31 14.77 7.34 132.73 0.97 15.75 16 14 N -0.42 -17.58 2.93 -344.90 -1.01 -18.59 16 15 C 0.10 3.71 9.99 83.13 0.83 4.54 16 16 C -0.07 -2.24 11.00 83.68 0.92 -1.32 16 17 N -0.42 -13.21 10.41 -190.95 -1.99 -15.19 16 18 C 0.06 1.99 10.64 87.02 0.93 2.92 16 19 C 0.31 11.73 7.51 135.64 1.02 12.75 16 20 N -0.53 -20.34 7.76 -318.98 -2.48 -22.82 16 21 C 0.08 2.30 2.67 44.99 0.12 2.42 16 22 H 0.06 1.43 5.32 -2.39 -0.01 1.42 16 23 C -0.10 -2.51 5.53 30.59 0.17 -2.34 16 24 C -0.10 -1.91 5.46 30.60 0.17 -1.74 16 25 C 0.10 1.75 3.25 44.92 0.15 1.90 16 26 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 27 N -0.85 -12.38 9.25 -168.66 -1.56 -13.94 16 28 C -0.14 -2.57 5.49 30.59 0.17 -2.40 16 29 C -0.09 -2.43 5.53 30.59 0.17 -2.26 16 30 C -0.24 -12.19 8.00 22.99 0.18 -12.00 16 31 H 0.29 12.41 8.29 -92.71 -0.77 11.65 16 32 H 0.12 5.10 8.06 -2.91 -0.02 5.07 16 33 H 0.15 5.91 8.06 -2.91 -0.02 5.89 16 34 H 0.17 6.05 5.94 -2.91 -0.02 6.03 16 35 H 0.20 4.45 8.06 -2.91 -0.02 4.43 16 36 H 0.20 4.84 5.99 -2.91 -0.02 4.82 16 37 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.35 4.17 9.04 -89.70 -0.81 3.36 16 42 H 0.35 4.09 8.98 -89.70 -0.81 3.28 16 43 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 46 H 0.04 1.20 8.14 -2.39 -0.02 1.19 16 47 H 0.13 6.42 4.20 -2.91 -0.01 6.41 16 Total: -1.00 -60.92 376.44 0.64 -60.28 By element: Atomic # 1 Polarization: 44.24 SS G_CDS: -0.59 Total: 43.64 kcal Atomic # 6 Polarization: -12.29 SS G_CDS: 7.51 Total: -4.78 kcal Atomic # 7 Polarization: -127.67 SS G_CDS: -8.31 Total: -135.98 kcal Atomic # 14 Polarization: 34.81 SS G_CDS: 2.03 Total: 36.84 kcal Total: -60.92 0.64 -60.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161294255.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.266 kcal (2) G-P(sol) polarization free energy of solvation -60.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds