Wall clock time and date at job start Tue Mar 31 2020 23:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30729 * 1 3 3 Si 1.86799 * 120.00177 * 2 1 4 4 H 1.48501 * 109.46605 * 269.99742 * 3 2 1 5 5 H 1.48503 * 109.47091 * 29.99352 * 3 2 1 6 6 H 1.48491 * 109.47483 * 149.99741 * 3 2 1 7 7 C 1.40051 * 119.99678 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99779 * 186.81690 * 7 2 1 9 9 C 1.41274 * 120.00222 * 6.82002 * 7 2 1 10 10 C 1.40717 * 120.15771 * 172.90073 * 9 7 2 11 11 N 1.31903 * 119.93042 * 180.23013 * 10 9 7 12 12 C 1.32152 * 120.27347 * 0.06964 * 11 10 9 13 13 C 1.39923 * 120.31798 * 359.95822 * 12 11 10 14 14 N 1.38837 * 119.96673 * 180.02562 * 13 12 11 15 15 C 1.46496 * 119.99703 * 359.97191 * 14 13 12 16 16 C 1.53003 * 109.46865 * 181.90497 * 15 14 13 17 17 C 1.50701 * 109.52310 * 56.89845 * 16 15 14 18 18 C 1.38668 * 120.41614 * 238.38368 * 17 16 15 19 19 C 1.38636 * 118.41578 * 180.02562 * 18 17 16 20 20 C 1.38218 * 119.16260 * 0.02562 * 19 18 17 21 21 N 1.31854 * 120.76461 * 0.02562 * 20 19 18 22 22 C 1.31891 * 121.72500 * 359.70195 * 21 20 19 23 23 C 1.53119 * 109.51963 * 296.77504 * 16 15 14 24 24 C 1.53173 * 109.20994 * 297.68807 * 23 16 15 25 25 N 1.46845 * 109.55403 * 300.86114 * 24 23 16 26 26 C 1.46852 * 111.19999 * 61.74271 * 25 24 23 27 27 C 1.53037 * 109.52114 * 298.25683 * 26 25 24 28 28 N 1.32256 * 120.06644 * 359.97438 * 13 12 11 29 29 H 0.97006 * 120.00115 * 0.02562 * 1 2 3 30 30 H 1.08005 * 120.03727 * 0.25400 * 10 9 7 31 31 H 1.07995 * 119.84223 * 179.97438 * 12 11 10 32 32 H 0.96997 * 119.99573 * 179.97438 * 14 13 12 33 33 H 1.08994 * 109.47301 * 301.90004 * 15 14 13 34 34 H 1.08994 * 109.47294 * 61.90689 * 15 14 13 35 35 H 1.07994 * 120.79375 * 0.02819 * 18 17 16 36 36 H 1.08005 * 120.41554 * 180.02562 * 19 18 17 37 37 H 1.07998 * 119.62098 * 179.97438 * 20 19 18 38 38 H 1.07994 * 119.61720 * 180.31330 * 22 21 20 39 39 H 1.08997 * 109.50881 * 57.69190 * 23 16 15 40 40 H 1.09006 * 109.50326 * 177.80757 * 23 16 15 41 41 H 1.09000 * 109.44757 * 180.83913 * 24 23 16 42 42 H 1.08997 * 109.43998 * 60.88038 * 24 23 16 43 43 H 1.00901 * 111.00122 * 297.64101 * 25 24 23 44 44 H 1.08994 * 109.46139 * 178.23885 * 26 25 24 45 45 H 1.08994 * 109.44989 * 58.26553 * 26 25 24 46 46 H 1.09004 * 109.50015 * 299.23976 * 27 26 25 47 47 H 1.08999 * 109.53632 * 179.13902 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 2.4888 2.0462 -1.4001 5 1 1.4387 2.6527 0.6999 6 1 3.5388 1.4402 0.7000 7 6 2.0075 -1.2129 0.0005 8 1 3.0818 -1.2162 0.1116 9 6 1.3086 -2.4321 -0.1442 10 6 2.0162 -3.6391 -0.2940 11 7 1.3591 -4.7743 -0.4333 12 6 0.0377 -4.7834 -0.4344 13 6 -0.6770 -3.5895 -0.2868 14 7 -2.0652 -3.6075 -0.2884 15 6 -2.7811 -4.8760 -0.4451 16 6 -4.2882 -4.6126 -0.4601 17 6 -4.6184 -3.6394 -1.5623 18 6 -5.2495 -2.4390 -1.2731 19 6 -5.5342 -1.5746 -2.3190 20 6 -5.1826 -1.9358 -3.6060 21 7 -4.5842 -3.0863 -3.8439 22 6 -4.2932 -3.9306 -2.8733 23 6 -4.7183 -4.0254 0.8870 24 6 -4.4354 -5.0448 1.9946 25 7 -5.1731 -6.2847 1.7215 26 6 -4.7428 -6.8908 0.4550 27 6 -5.0352 -5.9279 -0.6980 28 7 -0.0313 -2.4440 -0.1448 29 1 -0.4850 0.8401 -0.0004 30 1 3.0963 -3.6362 -0.2944 31 1 -0.4933 -5.7168 -0.5494 32 1 -2.5611 -2.7802 -0.1857 33 1 -2.4852 -5.3468 -1.3826 34 1 -2.5360 -5.5367 0.3864 35 1 -5.5128 -2.1834 -0.2574 36 1 -6.0246 -0.6310 -2.1304 37 1 -5.4013 -1.2683 -4.4263 38 1 -3.7980 -4.8616 -3.1063 39 1 -4.1584 -3.1105 1.0807 40 1 -5.7849 -3.8016 0.8625 41 1 -4.7540 -4.6364 2.9537 42 1 -3.3669 -5.2576 2.0274 43 1 -6.1688 -6.1212 1.7243 44 1 -5.2845 -7.8230 0.2960 45 1 -3.6729 -7.0948 0.4954 46 1 -6.1067 -5.7340 -0.7473 47 1 -4.7019 -6.3711 -1.6364 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162037688.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:14 Heat of formation + Delta-G solvation = 82.498967 kcal Electronic energy + Delta-G solvation = -29978.264801 eV Core-core repulsion = 26160.367205 eV Total energy + Delta-G solvation = -3817.897597 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.04102 -39.13811 -38.68284 -35.43483 -33.97927 -33.47532 -32.26439 -31.47937 -30.95563 -29.90335 -28.92203 -25.85844 -25.78439 -24.34087 -24.00014 -22.48165 -22.22042 -21.98155 -21.06217 -19.11946 -17.47729 -17.41313 -16.79455 -16.22521 -16.13558 -15.39286 -15.18167 -15.02184 -14.78133 -14.61053 -14.43135 -14.23520 -14.04007 -13.82623 -13.34381 -13.16271 -13.00341 -12.92612 -12.78799 -12.45636 -12.25913 -11.80548 -11.49625 -11.46150 -11.35199 -11.31608 -11.24440 -10.79368 -10.69271 -10.45737 -10.35887 -9.85431 -9.78138 -9.62586 -9.39789 -9.37209 -8.94044 -8.52368 -8.33870 -7.38155 -6.70361 -6.44923 -4.65470 1.11674 1.29609 2.70847 3.03218 3.06668 3.12130 3.28787 3.79979 3.86941 3.96634 4.10043 4.32448 4.45999 4.57435 4.68798 4.72192 4.86165 4.89895 4.93681 4.97099 5.15246 5.20196 5.25322 5.36180 5.53523 5.57237 5.64052 5.71103 5.73908 5.80251 5.83538 5.85626 5.93193 6.00238 6.08827 6.11158 6.13763 6.30747 6.34280 6.53212 6.69433 6.79655 6.84831 7.03595 7.13891 7.21568 7.60583 7.95554 7.99501 8.05225 8.42630 8.56487 8.85954 9.42734 10.01203 10.18745 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.010496 B = 0.003973 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2667.006987 B = 7046.471222 C = 8280.211510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.710 5.710 2 C 0.069 3.931 3 Si 0.909 3.091 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.259 1.259 7 C -0.417 4.417 8 H 0.090 0.910 9 C 0.247 3.753 10 C -0.107 4.107 11 N -0.408 5.408 12 C -0.169 4.169 13 C 0.374 3.626 14 N -0.726 5.726 15 C 0.150 3.850 16 C -0.020 4.020 17 C -0.115 4.115 18 C -0.075 4.075 19 C -0.169 4.169 20 C 0.091 3.909 21 N -0.482 5.482 22 C 0.112 3.888 23 C -0.148 4.148 24 C 0.054 3.946 25 N -0.683 5.683 26 C 0.053 3.947 27 C -0.140 4.140 28 N -0.508 5.508 29 H 0.272 0.728 30 H 0.129 0.871 31 H 0.118 0.882 32 H 0.394 0.606 33 H 0.055 0.945 34 H 0.064 0.936 35 H 0.135 0.865 36 H 0.132 0.868 37 H 0.152 0.848 38 H 0.150 0.850 39 H 0.078 0.922 40 H 0.064 0.936 41 H 0.076 0.924 42 H 0.083 0.917 43 H 0.337 0.663 44 H 0.077 0.923 45 H 0.080 0.920 46 H 0.066 0.934 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.702 -4.383 -0.173 16.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.331 5.331 2 C -0.157 4.157 3 Si 0.733 3.267 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.183 1.183 7 C -0.450 4.450 8 H 0.108 0.892 9 C 0.118 3.882 10 C -0.278 4.278 11 N -0.119 5.119 12 C -0.330 4.330 13 C 0.131 3.869 14 N -0.364 5.364 15 C 0.024 3.976 16 C -0.022 4.022 17 C -0.117 4.117 18 C -0.101 4.101 19 C -0.189 4.189 20 C -0.066 4.066 21 N -0.190 5.190 22 C -0.046 4.046 23 C -0.187 4.187 24 C -0.075 4.075 25 N -0.311 5.311 26 C -0.077 4.077 27 C -0.180 4.180 28 N -0.234 5.234 29 H 0.084 0.916 30 H 0.147 0.853 31 H 0.135 0.865 32 H 0.229 0.771 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.153 0.847 36 H 0.150 0.850 37 H 0.169 0.831 38 H 0.167 0.833 39 H 0.096 0.904 40 H 0.083 0.917 41 H 0.094 0.906 42 H 0.101 0.899 43 H 0.154 0.846 44 H 0.095 0.905 45 H 0.099 0.901 46 H 0.085 0.915 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -15.302 -5.103 -0.660 16.145 hybrid contribution -0.476 2.153 0.095 2.207 sum -15.779 -2.950 -0.565 16.062 Atomic orbital electron populations 1.70118 1.07348 1.27847 1.27802 1.26111 0.94908 1.01254 0.93436 0.86290 0.80527 0.80501 0.79348 1.19319 1.20158 1.18317 1.19618 0.94979 0.89298 1.41133 0.89213 1.19085 0.87710 0.93177 0.88188 1.22903 0.98949 0.89462 1.16455 1.67494 1.08300 1.30038 1.06060 1.21881 0.90724 0.95848 1.24596 1.19475 0.84978 0.91978 0.90493 1.44035 1.02494 1.07648 1.82217 1.21240 0.88130 0.87286 1.00935 1.19682 0.95550 0.94002 0.92923 1.20684 0.99314 0.96044 0.95673 1.21569 0.95787 0.92915 0.99824 1.22109 1.02012 1.00700 0.94062 1.22714 0.94409 0.93397 0.96053 1.67679 1.11182 1.03629 1.36524 1.22517 0.95592 0.98323 0.88136 1.22406 1.01164 1.00521 0.94601 1.22116 1.00194 0.88075 0.97141 1.60651 1.09498 1.27417 1.33558 1.22118 1.02274 0.96539 0.86751 1.22297 1.00127 0.94809 1.00726 1.69026 1.08369 1.22301 1.23733 0.91644 0.85343 0.86469 0.77101 0.92683 0.91829 0.84747 0.85003 0.83112 0.83305 0.90389 0.91696 0.90597 0.89910 0.84596 0.90495 0.90113 0.91503 0.90745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.34 11.52 55.55 0.64 -17.70 16 2 C 0.07 1.72 5.49 -17.34 -0.10 1.62 16 3 Si 0.91 18.17 29.57 -169.99 -5.03 13.15 16 4 H -0.27 -5.35 7.11 56.52 0.40 -4.94 16 5 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 6 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 7 C -0.42 -10.98 9.15 -37.75 -0.35 -11.32 16 8 H 0.09 2.18 7.86 -52.48 -0.41 1.77 16 9 C 0.25 6.79 6.54 -84.83 -0.55 6.24 16 10 C -0.11 -2.81 10.97 -16.59 -0.18 -2.99 16 11 N -0.41 -10.47 10.47 -12.11 -0.13 -10.59 16 12 C -0.17 -4.04 10.49 -16.78 -0.18 -4.21 16 13 C 0.37 8.95 7.66 -155.01 -1.19 7.77 16 14 N -0.73 -13.62 5.15 -60.29 -0.31 -13.93 16 15 C 0.15 2.12 2.96 -4.04 -0.01 2.11 16 16 C -0.02 -0.22 0.37 -155.54 -0.06 -0.28 16 17 C -0.12 -1.42 3.89 -104.49 -0.41 -1.83 16 18 C -0.08 -0.88 9.09 -39.28 -0.36 -1.24 16 19 C -0.17 -1.95 10.11 -39.44 -0.40 -2.35 16 20 C 0.09 1.16 11.18 -17.55 -0.20 0.97 16 21 N -0.48 -7.20 10.36 -13.26 -0.14 -7.34 16 22 C 0.11 1.55 9.97 -17.55 -0.17 1.37 16 23 C -0.15 -1.52 3.44 -26.58 -0.09 -1.61 16 24 C 0.05 0.56 6.31 -3.77 -0.02 0.54 16 25 N -0.68 -6.31 6.87 -113.74 -0.78 -7.09 16 26 C 0.05 0.46 6.31 -3.83 -0.02 0.44 16 27 C -0.14 -1.24 4.67 -26.65 -0.12 -1.37 16 28 N -0.51 -13.78 8.10 -10.14 -0.08 -13.87 16 29 H 0.27 6.38 8.29 -40.82 -0.34 6.05 16 30 H 0.13 3.07 8.06 -52.48 -0.42 2.65 16 31 H 0.12 2.48 6.70 -52.49 -0.35 2.12 16 32 H 0.39 7.56 7.08 -40.82 -0.29 7.27 16 33 H 0.06 0.81 7.13 -51.93 -0.37 0.44 16 34 H 0.06 0.91 4.81 -51.93 -0.25 0.66 16 35 H 0.13 1.36 6.06 -52.49 -0.32 1.04 16 36 H 0.13 1.18 8.06 -52.48 -0.42 0.75 16 37 H 0.15 1.53 8.06 -52.49 -0.42 1.11 16 38 H 0.15 1.91 7.21 -52.49 -0.38 1.54 16 39 H 0.08 0.94 6.60 -51.93 -0.34 0.60 16 40 H 0.06 0.58 7.33 -51.93 -0.38 0.20 16 41 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.08 1.05 6.44 -51.93 -0.33 0.71 16 43 H 0.34 2.61 8.86 -39.29 -0.35 2.26 16 44 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.08 0.81 6.58 -51.93 -0.34 0.46 16 46 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.07 0.64 7.62 -51.93 -0.40 0.25 16 LS Contribution 369.12 15.07 5.56 5.56 Total: -1.00 -31.20 369.12 -10.85 -42.05 By element: Atomic # 1 Polarization: 22.07 SS G_CDS: -6.18 Total: 15.89 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: -4.41 Total: -6.14 kcal Atomic # 7 Polarization: -69.71 SS G_CDS: -0.80 Total: -70.51 kcal Atomic # 14 Polarization: 18.17 SS G_CDS: -5.03 Total: 13.15 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.20 -10.85 -42.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162037688.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.553 kcal (2) G-P(sol) polarization free energy of solvation -31.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds