Wall clock time and date at job start Tue Mar 31 2020 23:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30729 * 1 3 3 Si 1.86799 * 120.00177 * 2 1 4 4 H 1.48501 * 109.46605 * 269.99742 * 3 2 1 5 5 H 1.48503 * 109.47091 * 29.99352 * 3 2 1 6 6 H 1.48491 * 109.47483 * 149.99741 * 3 2 1 7 7 C 1.40051 * 119.99678 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99779 * 186.81690 * 7 2 1 9 9 C 1.41274 * 120.00222 * 6.82002 * 7 2 1 10 10 C 1.40717 * 120.15771 * 172.90073 * 9 7 2 11 11 N 1.31903 * 119.93042 * 180.23013 * 10 9 7 12 12 C 1.32152 * 120.27347 * 0.06964 * 11 10 9 13 13 C 1.39923 * 120.31798 * 359.95822 * 12 11 10 14 14 N 1.38837 * 119.96673 * 180.02562 * 13 12 11 15 15 C 1.46496 * 119.99703 * 359.97191 * 14 13 12 16 16 C 1.53003 * 109.46865 * 181.90497 * 15 14 13 17 17 C 1.50701 * 109.52310 * 56.89845 * 16 15 14 18 18 C 1.38668 * 120.41614 * 238.38368 * 17 16 15 19 19 C 1.38636 * 118.41578 * 180.02562 * 18 17 16 20 20 C 1.38218 * 119.16260 * 0.02562 * 19 18 17 21 21 N 1.31854 * 120.76461 * 0.02562 * 20 19 18 22 22 C 1.31891 * 121.72500 * 359.70195 * 21 20 19 23 23 C 1.53119 * 109.51963 * 296.77504 * 16 15 14 24 24 C 1.53173 * 109.20994 * 297.68807 * 23 16 15 25 25 N 1.46845 * 109.55403 * 300.86114 * 24 23 16 26 26 C 1.46852 * 111.19999 * 61.74271 * 25 24 23 27 27 C 1.53037 * 109.52114 * 298.25683 * 26 25 24 28 28 N 1.32256 * 120.06644 * 359.97438 * 13 12 11 29 29 H 0.97006 * 120.00115 * 0.02562 * 1 2 3 30 30 H 1.08005 * 120.03727 * 0.25400 * 10 9 7 31 31 H 1.07995 * 119.84223 * 179.97438 * 12 11 10 32 32 H 0.96997 * 119.99573 * 179.97438 * 14 13 12 33 33 H 1.08994 * 109.47301 * 301.90004 * 15 14 13 34 34 H 1.08994 * 109.47294 * 61.90689 * 15 14 13 35 35 H 1.07994 * 120.79375 * 0.02819 * 18 17 16 36 36 H 1.08005 * 120.41554 * 180.02562 * 19 18 17 37 37 H 1.07998 * 119.62098 * 179.97438 * 20 19 18 38 38 H 1.07994 * 119.61720 * 180.31330 * 22 21 20 39 39 H 1.08997 * 109.50881 * 57.69190 * 23 16 15 40 40 H 1.09006 * 109.50326 * 177.80757 * 23 16 15 41 41 H 1.09000 * 109.44757 * 180.83913 * 24 23 16 42 42 H 1.08997 * 109.43998 * 60.88038 * 24 23 16 43 43 H 1.00901 * 111.00122 * 297.64101 * 25 24 23 44 44 H 1.08994 * 109.46139 * 178.23885 * 26 25 24 45 45 H 1.08994 * 109.44989 * 58.26553 * 26 25 24 46 46 H 1.09004 * 109.50015 * 299.23976 * 27 26 25 47 47 H 1.08999 * 109.53632 * 179.13902 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 2.4888 2.0462 -1.4001 5 1 1.4387 2.6527 0.6999 6 1 3.5388 1.4402 0.7000 7 6 2.0075 -1.2129 0.0005 8 1 3.0818 -1.2162 0.1116 9 6 1.3086 -2.4321 -0.1442 10 6 2.0162 -3.6391 -0.2940 11 7 1.3591 -4.7743 -0.4333 12 6 0.0377 -4.7834 -0.4344 13 6 -0.6770 -3.5895 -0.2868 14 7 -2.0652 -3.6075 -0.2884 15 6 -2.7811 -4.8760 -0.4451 16 6 -4.2882 -4.6126 -0.4601 17 6 -4.6184 -3.6394 -1.5623 18 6 -5.2495 -2.4390 -1.2731 19 6 -5.5342 -1.5746 -2.3190 20 6 -5.1826 -1.9358 -3.6060 21 7 -4.5842 -3.0863 -3.8439 22 6 -4.2932 -3.9306 -2.8733 23 6 -4.7183 -4.0254 0.8870 24 6 -4.4354 -5.0448 1.9946 25 7 -5.1731 -6.2847 1.7215 26 6 -4.7428 -6.8908 0.4550 27 6 -5.0352 -5.9279 -0.6980 28 7 -0.0313 -2.4440 -0.1448 29 1 -0.4850 0.8401 -0.0004 30 1 3.0963 -3.6362 -0.2944 31 1 -0.4933 -5.7168 -0.5494 32 1 -2.5611 -2.7802 -0.1857 33 1 -2.4852 -5.3468 -1.3826 34 1 -2.5360 -5.5367 0.3864 35 1 -5.5128 -2.1834 -0.2574 36 1 -6.0246 -0.6310 -2.1304 37 1 -5.4013 -1.2683 -4.4263 38 1 -3.7980 -4.8616 -3.1063 39 1 -4.1584 -3.1105 1.0807 40 1 -5.7849 -3.8016 0.8625 41 1 -4.7540 -4.6364 2.9537 42 1 -3.3669 -5.2576 2.0274 43 1 -6.1688 -6.1212 1.7243 44 1 -5.2845 -7.8230 0.2960 45 1 -3.6729 -7.0948 0.4954 46 1 -6.1067 -5.7340 -0.7473 47 1 -4.7019 -6.3711 -1.6364 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162037688.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:13 Heat of formation + Delta-G solvation = 61.246220 kcal Electronic energy + Delta-G solvation = -29979.186390 eV Core-core repulsion = 26160.367205 eV Total energy + Delta-G solvation = -3818.819185 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.01958 -40.72949 -39.89587 -36.78767 -35.79827 -34.75157 -33.46089 -33.08137 -31.81871 -31.16641 -30.36033 -27.76374 -27.02886 -25.29183 -24.98220 -24.25157 -23.22768 -22.89805 -22.80070 -20.18810 -19.29318 -18.41068 -18.31685 -17.30230 -17.23091 -17.01232 -16.71496 -16.58723 -15.96406 -15.84294 -15.42616 -15.33117 -15.09674 -15.01335 -14.73404 -14.60820 -14.15370 -14.12617 -13.79712 -13.42055 -13.28916 -13.21610 -13.07127 -13.03288 -12.83422 -12.51775 -12.27667 -12.12839 -12.01963 -11.77218 -11.60645 -11.37611 -11.35113 -11.30448 -10.74672 -10.39511 -10.21113 -9.90497 -9.32691 -9.27701 -8.46295 -8.33853 -6.64287 0.15337 0.33508 0.84300 1.26215 1.40481 1.54036 1.55469 2.19776 2.48364 2.82422 2.83036 3.28472 3.47843 3.49796 3.64258 3.80083 3.90668 3.93827 4.00279 4.05062 4.13032 4.19983 4.27930 4.37770 4.43511 4.44426 4.47683 4.52821 4.62250 4.68386 4.76600 4.79760 4.86980 4.95749 4.96790 4.98590 5.02438 5.13551 5.15126 5.19494 5.20693 5.28176 5.37919 5.71379 5.76226 6.08099 6.08954 6.23627 6.57554 6.64119 6.68401 6.98820 7.01092 7.46572 8.08360 8.34024 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.010496 B = 0.003973 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2667.006987 B = 7046.471222 C = 8280.211510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.742 5.742 2 C 0.026 3.974 3 Si 0.991 3.009 4 H -0.265 1.265 5 H -0.266 1.266 6 H -0.251 1.251 7 C -0.444 4.444 8 H 0.099 0.901 9 C 0.217 3.783 10 C -0.136 4.136 11 N -0.417 5.417 12 C -0.175 4.175 13 C 0.368 3.632 14 N -0.712 5.712 15 C 0.148 3.852 16 C -0.008 4.008 17 C -0.117 4.117 18 C -0.082 4.082 19 C -0.167 4.167 20 C 0.075 3.925 21 N -0.513 5.513 22 C 0.090 3.910 23 C -0.141 4.141 24 C 0.059 3.941 25 N -0.685 5.685 26 C 0.055 3.945 27 C -0.132 4.132 28 N -0.538 5.538 29 H 0.281 0.719 30 H 0.140 0.860 31 H 0.143 0.857 32 H 0.392 0.608 33 H 0.052 0.948 34 H 0.066 0.934 35 H 0.153 0.847 36 H 0.160 0.840 37 H 0.172 0.828 38 H 0.149 0.851 39 H 0.059 0.941 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.056 0.944 43 H 0.350 0.650 44 H 0.095 0.905 45 H 0.066 0.934 46 H 0.081 0.919 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.432 -3.610 0.252 17.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.363 5.363 2 C -0.198 4.198 3 Si 0.810 3.190 4 H -0.190 1.190 5 H -0.191 1.191 6 H -0.175 1.175 7 C -0.476 4.476 8 H 0.117 0.883 9 C 0.089 3.911 10 C -0.305 4.305 11 N -0.128 5.128 12 C -0.338 4.338 13 C 0.123 3.877 14 N -0.347 5.347 15 C 0.024 3.976 16 C -0.010 4.010 17 C -0.119 4.119 18 C -0.108 4.108 19 C -0.187 4.187 20 C -0.082 4.082 21 N -0.222 5.222 22 C -0.066 4.066 23 C -0.180 4.180 24 C -0.070 4.070 25 N -0.314 5.314 26 C -0.075 4.075 27 C -0.171 4.171 28 N -0.266 5.266 29 H 0.092 0.908 30 H 0.157 0.843 31 H 0.160 0.840 32 H 0.227 0.773 33 H 0.070 0.930 34 H 0.084 0.916 35 H 0.171 0.829 36 H 0.178 0.822 37 H 0.189 0.811 38 H 0.167 0.833 39 H 0.077 0.923 40 H 0.106 0.894 41 H 0.102 0.898 42 H 0.074 0.926 43 H 0.168 0.832 44 H 0.114 0.886 45 H 0.084 0.916 46 H 0.099 0.901 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -17.061 -4.371 -0.232 17.614 hybrid contribution -0.062 1.850 -0.047 1.852 sum -17.123 -2.521 -0.279 17.310 Atomic orbital electron populations 1.70195 1.08999 1.29379 1.27709 1.27048 0.95760 1.04614 0.92358 0.85076 0.79200 0.75284 0.79407 1.19025 1.19068 1.17475 1.20033 0.95726 0.90044 1.41794 0.88289 1.19511 0.88446 0.94188 0.88913 1.23043 0.99583 0.89501 1.18331 1.67487 1.09173 1.30002 1.06177 1.22297 0.90495 0.96957 1.24013 1.19802 0.86914 0.91411 0.89550 1.44148 1.00696 1.09267 1.80613 1.21459 0.90122 0.85284 1.00742 1.19603 0.93151 0.95129 0.93069 1.20768 0.99242 0.96599 0.95300 1.21888 0.95449 0.92604 1.00882 1.22451 1.01205 1.01598 0.93411 1.23164 0.94272 0.93190 0.97532 1.67643 1.12331 1.04750 1.37466 1.22643 0.96498 0.98638 0.88844 1.22356 1.02187 0.99528 0.93923 1.21994 0.98817 0.88632 0.97605 1.60613 1.10276 1.26658 1.33830 1.22122 1.01710 0.97227 0.86426 1.22259 1.00507 0.93388 1.00961 1.69038 1.08549 1.23706 1.25288 0.90845 0.84282 0.83970 0.77281 0.92962 0.91567 0.82949 0.82213 0.81122 0.83322 0.92278 0.89409 0.89839 0.92578 0.83167 0.88624 0.91586 0.90080 0.90402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -38.60 11.52 21.84 0.25 -38.35 16 2 C 0.03 1.27 5.49 85.30 0.47 1.74 16 3 Si 0.99 36.87 29.57 68.60 2.03 38.90 16 4 H -0.27 -9.71 7.11 99.48 0.71 -9.00 16 5 H -0.27 -9.38 7.11 99.48 0.71 -8.68 16 6 H -0.25 -8.95 7.11 99.48 0.71 -8.24 16 7 C -0.44 -23.78 9.15 23.46 0.21 -23.56 16 8 H 0.10 4.89 7.86 -2.91 -0.02 4.87 16 9 C 0.22 12.34 6.54 40.17 0.26 12.60 16 10 C -0.14 -7.33 10.97 85.29 0.94 -6.39 16 11 N -0.42 -21.84 10.47 -192.23 -2.01 -23.86 16 12 C -0.17 -8.48 10.49 85.05 0.89 -7.59 16 13 C 0.37 17.99 7.66 133.36 1.02 19.02 16 14 N -0.71 -26.92 5.15 -344.65 -1.77 -28.69 16 15 C 0.15 4.15 2.96 86.38 0.26 4.41 16 16 C -0.01 -0.17 0.37 -52.85 -0.02 -0.19 16 17 C -0.12 -2.76 3.89 -19.78 -0.08 -2.84 16 18 C -0.08 -1.79 9.09 22.47 0.20 -1.59 16 19 C -0.17 -3.54 10.11 22.36 0.23 -3.31 16 20 C 0.07 1.84 11.18 84.68 0.95 2.78 16 21 N -0.51 -15.23 10.36 -195.86 -2.03 -17.26 16 22 C 0.09 2.49 9.97 84.67 0.84 3.33 16 23 C -0.14 -2.65 3.44 30.69 0.11 -2.54 16 24 C 0.06 1.15 6.31 86.37 0.54 1.69 16 25 N -0.68 -11.14 6.87 -513.77 -3.53 -14.67 16 26 C 0.05 0.85 6.31 86.32 0.54 1.39 16 27 C -0.13 -2.06 4.67 30.65 0.14 -1.92 16 28 N -0.54 -29.99 8.10 -186.00 -1.51 -31.50 16 29 H 0.28 13.12 8.29 -92.70 -0.77 12.36 16 30 H 0.14 6.89 8.06 -2.91 -0.02 6.87 16 31 H 0.14 5.99 6.70 -2.91 -0.02 5.97 16 32 H 0.39 15.18 7.08 -92.71 -0.66 14.52 16 33 H 0.05 1.52 7.13 -2.39 -0.02 1.50 16 34 H 0.07 1.88 4.81 -2.39 -0.01 1.87 16 35 H 0.15 2.69 6.06 -2.91 -0.02 2.68 16 36 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 37 H 0.17 3.25 8.06 -2.91 -0.02 3.23 16 38 H 0.15 3.87 7.21 -2.91 -0.02 3.85 16 39 H 0.06 1.37 6.60 -2.39 -0.02 1.35 16 40 H 0.09 1.29 7.33 -2.38 -0.02 1.27 16 41 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.06 1.40 6.44 -2.39 -0.02 1.38 16 43 H 0.35 4.35 8.86 -89.69 -0.79 3.55 16 44 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.07 1.24 6.58 -2.39 -0.02 1.22 16 46 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 47 H 0.08 1.20 7.62 -2.39 -0.02 1.19 16 Total: -1.00 -69.06 369.12 -1.48 -70.54 By element: Atomic # 1 Polarization: 48.26 SS G_CDS: -0.42 Total: 47.84 kcal Atomic # 6 Polarization: -10.47 SS G_CDS: 7.51 Total: -2.96 kcal Atomic # 7 Polarization: -143.72 SS G_CDS: -10.60 Total: -154.32 kcal Atomic # 14 Polarization: 36.87 SS G_CDS: 2.03 Total: 38.90 kcal Total: -69.06 -1.48 -70.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162037688.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.784 kcal (2) G-P(sol) polarization free energy of solvation -69.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds