Wall clock time and date at job start Tue Mar 31 2020 23:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30734 * 1 3 3 Si 1.86797 * 119.99810 * 2 1 4 4 H 1.48503 * 109.47163 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47283 * 299.99928 * 3 2 1 6 6 H 1.48504 * 109.47315 * 60.00178 * 3 2 1 7 7 C 1.40056 * 119.99843 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99949 * 186.29876 * 7 2 1 9 9 C 1.41270 * 120.00367 * 6.29886 * 7 2 1 10 10 C 1.40720 * 120.16076 * 173.76583 * 9 7 2 11 11 N 1.31900 * 119.92821 * 179.97438 * 10 9 7 12 12 C 1.32148 * 120.27538 * 0.02562 * 11 10 9 13 13 C 1.39918 * 120.32370 * 0.02562 * 12 11 10 14 14 N 1.38831 * 119.97443 * 179.97438 * 13 12 11 15 15 C 1.46951 * 110.99481 * 0.02562 * 14 13 12 16 16 C 1.53049 * 109.36279 * 183.18528 * 15 14 13 17 17 N 1.46950 * 109.36632 * 301.59983 * 16 15 14 18 18 C 1.46903 * 111.00337 * 183.19075 * 17 16 15 19 19 C 1.52996 * 109.47569 * 169.99949 * 18 17 16 20 20 C 1.50700 * 109.47398 * 179.97438 * 19 18 17 21 21 C 1.38649 * 120.79214 * 270.29726 * 20 19 18 22 22 C 1.38202 * 119.16033 * 180.22160 * 21 20 19 23 23 N 1.31867 * 120.76703 * 359.47055 * 22 21 20 24 24 C 1.31872 * 121.72344 * 0.28583 * 23 22 21 25 25 C 1.38203 * 120.76500 * 359.96715 * 24 23 22 26 26 C 1.46955 * 110.88441 * 59.31936 * 17 16 15 27 27 C 1.46956 * 110.99828 * 123.79557 * 14 13 12 28 28 N 1.32266 * 120.06014 * 0.24932 * 13 12 11 29 29 H 0.96998 * 119.99663 * 359.97438 * 1 2 3 30 30 H 1.08001 * 120.03579 * 0.02562 * 10 9 7 31 31 H 1.08000 * 119.84121 * 180.02562 * 12 11 10 32 32 H 1.08996 * 109.49489 * 63.22124 * 15 14 13 33 33 H 1.09000 * 109.50934 * 303.15920 * 15 14 13 34 34 H 1.09006 * 109.49171 * 181.62969 * 16 15 14 35 35 H 1.09003 * 109.48894 * 61.56675 * 16 15 14 36 36 H 1.09001 * 109.47363 * 49.99167 * 18 17 16 37 37 H 1.09004 * 109.46675 * 289.99747 * 18 17 16 38 38 H 1.09001 * 109.47417 * 59.99251 * 19 18 17 39 39 H 1.09004 * 109.46957 * 299.99625 * 19 18 17 40 40 H 1.08007 * 120.41795 * 359.97438 * 21 20 19 41 41 H 1.08001 * 119.61256 * 179.75549 * 22 21 20 42 42 H 1.07997 * 119.61151 * 180.02562 * 24 23 22 43 43 H 1.08002 * 120.41594 * 180.02562 * 25 24 23 44 44 H 1.09002 * 109.48869 * 60.64202 * 26 17 16 45 45 H 1.09000 * 109.49127 * 180.71414 * 26 17 16 46 46 H 1.09003 * 109.49266 * 296.78516 * 27 14 13 47 47 H 1.09001 * 109.48705 * 56.82952 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 3.7013 1.3464 -0.0006 5 1 1.8825 2.3964 -1.2125 6 1 1.8825 2.3965 1.2125 7 6 2.0076 -1.2129 -0.0005 8 1 3.0827 -1.2158 0.1021 9 6 1.3077 -2.4326 -0.1353 10 6 2.0143 -3.6423 -0.2680 11 7 1.3561 -4.7786 -0.3930 12 6 0.0347 -4.7863 -0.3948 13 6 -0.6790 -3.5899 -0.2647 14 7 -2.0672 -3.6064 -0.2680 15 6 -2.5771 -4.9765 -0.4178 16 6 -4.1052 -4.9435 -0.4966 17 7 -4.6423 -4.3147 0.7181 18 6 -6.1112 -4.3323 0.7147 19 6 -6.6296 -3.9027 2.0886 20 6 -8.1365 -3.9202 2.0849 21 6 -8.8585 -2.7950 1.7176 22 6 -10.2395 -2.8470 1.7307 23 7 -10.8696 -3.9525 2.0768 24 6 -10.2156 -5.0427 2.4271 25 6 -8.8339 -5.0640 2.4427 26 6 -4.1324 -2.9446 0.8680 27 6 -2.6042 -2.9782 0.9471 28 7 -0.0323 -2.4425 -0.1439 29 1 -0.4849 0.8401 0.0004 30 1 3.0943 -3.6405 -0.2666 31 1 -0.4971 -5.7208 -0.4972 32 1 -2.2701 -5.5747 0.4400 33 1 -2.1754 -5.4166 -1.3306 34 1 -4.4872 -5.9611 -0.5787 35 1 -4.4119 -4.3680 -1.3701 36 1 -6.4620 -5.3401 0.4928 37 1 -6.4810 -3.6434 -0.0448 38 1 -6.2788 -2.8949 2.3105 39 1 -6.2598 -4.5916 2.8481 40 1 -8.3481 -1.8880 1.4288 41 1 -10.8091 -1.9735 1.4498 42 1 -10.7663 -5.9296 2.7040 43 1 -8.3040 -5.9601 2.7301 44 1 -4.4394 -2.3464 0.0101 45 1 -4.5342 -2.5048 1.7809 46 1 -2.2975 -3.5540 1.8203 47 1 -2.2219 -1.9608 1.0298 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165060356.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:40:36 Heat of formation + Delta-G solvation = 99.654435 kcal Electronic energy + Delta-G solvation = -28345.584845 eV Core-core repulsion = 24528.431165 eV Total energy + Delta-G solvation = -3817.153680 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.47984 -39.80272 -38.40853 -36.01858 -34.15006 -33.86882 -31.84041 -31.48098 -30.75368 -30.30475 -28.84984 -26.29502 -25.83141 -23.78073 -23.65040 -23.30935 -21.84836 -21.55187 -20.99431 -19.58691 -17.67080 -16.99394 -16.68544 -16.55738 -15.92434 -15.69623 -15.26964 -15.11879 -15.00214 -14.72001 -14.54971 -14.24221 -14.07508 -14.00573 -13.70807 -13.30839 -13.17537 -12.63064 -12.58126 -12.25223 -12.02854 -11.83424 -11.63771 -11.48568 -11.39799 -11.14438 -11.01767 -10.79090 -10.73204 -10.56840 -10.32853 -9.88598 -9.79131 -9.73662 -9.51044 -9.48285 -9.44513 -8.49092 -8.32768 -7.53048 -7.10154 -6.50336 -4.73306 0.84657 0.95379 2.47944 2.92833 3.00516 3.04815 3.16874 3.50113 3.79750 3.81708 4.18033 4.23662 4.44497 4.50302 4.61830 4.79425 4.82416 4.87705 4.98741 5.05017 5.24829 5.29741 5.40436 5.41461 5.48777 5.52255 5.58289 5.64786 5.70364 5.76179 5.77383 5.85082 5.87314 5.98319 6.10731 6.12031 6.20972 6.30493 6.37895 6.42232 6.51289 6.72962 6.90334 6.98542 7.02376 7.07554 7.45146 7.52562 7.68564 7.86824 8.04636 8.44601 8.67056 9.27294 9.84706 10.09697 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.015960 B = 0.002303 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.916215 B =12152.628663 C =13644.453795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.704 5.704 2 C 0.066 3.934 3 Si 0.911 3.089 4 H -0.258 1.258 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.411 4.411 8 H 0.092 0.908 9 C 0.226 3.774 10 C -0.085 4.085 11 N -0.416 5.416 12 C -0.159 4.159 13 C 0.290 3.710 14 N -0.474 5.474 15 C 0.061 3.939 16 C 0.060 3.940 17 N -0.540 5.540 18 C 0.065 3.935 19 C -0.083 4.083 20 C -0.032 4.032 21 C -0.170 4.170 22 C 0.098 3.902 23 N -0.493 5.493 24 C 0.097 3.903 25 C -0.170 4.170 26 C 0.055 3.945 27 C 0.074 3.926 28 N -0.465 5.465 29 H 0.275 0.725 30 H 0.132 0.868 31 H 0.127 0.873 32 H 0.051 0.949 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.042 0.958 36 H 0.074 0.926 37 H 0.035 0.965 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.134 0.866 41 H 0.154 0.846 42 H 0.154 0.846 43 H 0.135 0.865 44 H 0.043 0.957 45 H 0.079 0.921 46 H 0.038 0.962 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.659 -4.052 3.776 17.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.325 5.325 2 C -0.161 4.161 3 Si 0.735 3.265 4 H -0.182 1.182 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.443 4.443 8 H 0.110 0.890 9 C 0.099 3.901 10 C -0.256 4.256 11 N -0.128 5.128 12 C -0.320 4.320 13 C 0.048 3.952 14 N -0.192 5.192 15 C -0.067 4.067 16 C -0.068 4.068 17 N -0.265 5.265 18 C -0.064 4.064 19 C -0.120 4.120 20 C -0.041 4.041 21 C -0.190 4.190 22 C -0.058 4.058 23 N -0.202 5.202 24 C -0.059 4.059 25 C -0.189 4.189 26 C -0.073 4.073 27 C -0.053 4.053 28 N -0.187 5.187 29 H 0.086 0.914 30 H 0.149 0.851 31 H 0.144 0.856 32 H 0.069 0.931 33 H 0.102 0.898 34 H 0.097 0.903 35 H 0.060 0.940 36 H 0.093 0.907 37 H 0.054 0.946 38 H 0.098 0.902 39 H 0.105 0.895 40 H 0.152 0.848 41 H 0.172 0.828 42 H 0.171 0.829 43 H 0.153 0.847 44 H 0.062 0.938 45 H 0.097 0.903 46 H 0.056 0.944 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -17.835 -3.934 3.769 18.648 hybrid contribution 1.217 0.810 -0.246 1.482 sum -16.618 -3.124 3.522 17.272 Atomic orbital electron populations 1.70105 1.07297 1.28135 1.26931 1.26142 0.94990 1.01377 0.93550 0.86205 0.80940 0.80715 0.78680 1.18160 1.19692 1.19717 1.19668 0.95015 0.89172 1.40458 0.89036 1.19247 0.88114 0.93406 0.89354 1.23058 0.99150 0.89468 1.13884 1.67557 1.08530 1.30180 1.06516 1.22598 0.91089 0.96418 1.21848 1.20640 0.88653 0.91659 0.94218 1.58493 1.05770 1.17695 1.37284 1.22217 0.93273 0.89262 1.01961 1.22175 0.94819 0.99097 0.90704 1.62185 1.06560 1.19510 1.38281 1.21985 0.87844 1.01166 0.95382 1.20689 0.88949 1.03664 0.98720 1.20357 0.96483 0.93157 0.94107 1.22123 0.95562 0.99491 1.01842 1.22763 0.91931 0.96007 0.95145 1.67676 1.41485 0.99880 1.11157 1.22766 0.91701 0.96288 0.95185 1.22108 0.95657 0.99070 1.02099 1.22299 0.95495 0.88442 1.01016 1.22115 0.92306 1.01708 0.89168 1.69172 1.07994 1.22189 1.19355 0.91358 0.85059 0.85561 0.93116 0.89767 0.90307 0.93976 0.90732 0.94641 0.90166 0.89469 0.84772 0.82838 0.82852 0.84671 0.93840 0.90296 0.94386 0.87631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -17.59 11.51 55.55 0.64 -16.96 16 2 C 0.07 1.59 5.49 -17.34 -0.10 1.50 16 3 Si 0.91 17.57 29.56 -169.99 -5.03 12.54 16 4 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 5 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 6 H -0.27 -5.16 7.11 56.52 0.40 -4.75 16 7 C -0.41 -10.44 9.15 -37.75 -0.35 -10.78 16 8 H 0.09 2.14 7.86 -52.49 -0.41 1.73 16 9 C 0.23 6.06 6.54 -84.83 -0.55 5.50 16 10 C -0.09 -2.16 10.97 -16.59 -0.18 -2.34 16 11 N -0.42 -10.46 10.47 -12.11 -0.13 -10.58 16 12 C -0.16 -3.75 10.00 -16.79 -0.17 -3.92 16 13 C 0.29 6.95 6.44 -155.01 -1.00 5.96 16 14 N -0.47 -9.46 4.78 -172.88 -0.83 -10.29 16 15 C 0.06 0.98 4.28 -3.77 -0.02 0.97 16 16 C 0.06 0.78 5.61 -3.77 -0.02 0.76 16 17 N -0.54 -6.77 4.71 -234.46 -1.10 -7.88 16 18 C 0.06 0.64 4.94 -3.82 -0.02 0.62 16 19 C -0.08 -0.72 5.32 -27.88 -0.15 -0.87 16 20 C -0.03 -0.28 5.17 -104.32 -0.54 -0.82 16 21 C -0.17 -1.45 9.82 -39.44 -0.39 -1.83 16 22 C 0.10 0.87 11.18 -17.55 -0.20 0.67 16 23 N -0.49 -5.07 10.36 -13.25 -0.14 -5.21 16 24 C 0.10 0.83 11.18 -17.55 -0.20 0.64 16 25 C -0.17 -1.37 9.82 -39.44 -0.39 -1.76 16 26 C 0.06 0.78 5.41 -3.76 -0.02 0.76 16 27 C 0.07 1.35 5.47 -3.76 -0.02 1.33 16 28 N -0.47 -12.39 7.43 -10.14 -0.08 -12.46 16 29 H 0.28 6.20 8.29 -40.82 -0.34 5.87 16 30 H 0.13 3.02 8.06 -52.49 -0.42 2.59 16 31 H 0.13 2.63 5.78 -52.49 -0.30 2.32 16 32 H 0.05 0.84 7.57 -51.93 -0.39 0.44 16 33 H 0.08 1.33 7.15 -51.93 -0.37 0.96 16 34 H 0.08 0.85 8.07 -51.93 -0.42 0.43 16 35 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.69 8.03 -51.93 -0.42 0.27 16 37 H 0.04 0.37 8.12 -51.93 -0.42 -0.05 16 38 H 0.08 0.71 6.46 -51.93 -0.34 0.38 16 39 H 0.09 0.77 8.10 -51.93 -0.42 0.35 16 40 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16 41 H 0.15 0.99 8.06 -52.49 -0.42 0.57 16 42 H 0.15 0.92 8.06 -52.49 -0.42 0.50 16 43 H 0.14 0.85 8.06 -52.49 -0.42 0.42 16 44 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.08 0.96 6.34 -51.93 -0.33 0.63 16 46 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.11 2.22 7.69 -51.93 -0.40 1.82 16 LS Contribution 381.11 15.07 5.74 5.74 Total: -1.00 -30.41 381.11 -11.95 -42.36 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -6.74 Total: 6.36 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: -4.30 Total: -3.63 kcal Atomic # 7 Polarization: -61.74 SS G_CDS: -1.63 Total: -63.37 kcal Atomic # 14 Polarization: 17.57 SS G_CDS: -5.03 Total: 12.54 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.41 -11.95 -42.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165060356.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.013 kcal (2) G-P(sol) polarization free energy of solvation -30.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds