Wall clock time and date at job start Tue Mar 31 2020 23:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30734 * 1 3 3 Si 1.86797 * 119.99810 * 2 1 4 4 H 1.48503 * 109.47163 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47283 * 299.99928 * 3 2 1 6 6 H 1.48504 * 109.47315 * 60.00178 * 3 2 1 7 7 C 1.40056 * 119.99843 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99949 * 186.29876 * 7 2 1 9 9 C 1.41270 * 120.00367 * 6.29886 * 7 2 1 10 10 C 1.40720 * 120.16076 * 173.76583 * 9 7 2 11 11 N 1.31900 * 119.92821 * 179.97438 * 10 9 7 12 12 C 1.32148 * 120.27538 * 0.02562 * 11 10 9 13 13 C 1.39918 * 120.32370 * 0.02562 * 12 11 10 14 14 N 1.38831 * 119.97443 * 179.97438 * 13 12 11 15 15 C 1.46951 * 110.99481 * 0.02562 * 14 13 12 16 16 C 1.53049 * 109.36279 * 183.18528 * 15 14 13 17 17 N 1.46950 * 109.36632 * 301.59983 * 16 15 14 18 18 C 1.46903 * 111.00337 * 183.19075 * 17 16 15 19 19 C 1.52996 * 109.47569 * 169.99949 * 18 17 16 20 20 C 1.50700 * 109.47398 * 179.97438 * 19 18 17 21 21 C 1.38649 * 120.79214 * 270.29726 * 20 19 18 22 22 C 1.38202 * 119.16033 * 180.22160 * 21 20 19 23 23 N 1.31867 * 120.76703 * 359.47055 * 22 21 20 24 24 C 1.31872 * 121.72344 * 0.28583 * 23 22 21 25 25 C 1.38203 * 120.76500 * 359.96715 * 24 23 22 26 26 C 1.46955 * 110.88441 * 59.31936 * 17 16 15 27 27 C 1.46956 * 110.99828 * 123.79557 * 14 13 12 28 28 N 1.32266 * 120.06014 * 0.24932 * 13 12 11 29 29 H 0.96998 * 119.99663 * 359.97438 * 1 2 3 30 30 H 1.08001 * 120.03579 * 0.02562 * 10 9 7 31 31 H 1.08000 * 119.84121 * 180.02562 * 12 11 10 32 32 H 1.08996 * 109.49489 * 63.22124 * 15 14 13 33 33 H 1.09000 * 109.50934 * 303.15920 * 15 14 13 34 34 H 1.09006 * 109.49171 * 181.62969 * 16 15 14 35 35 H 1.09003 * 109.48894 * 61.56675 * 16 15 14 36 36 H 1.09001 * 109.47363 * 49.99167 * 18 17 16 37 37 H 1.09004 * 109.46675 * 289.99747 * 18 17 16 38 38 H 1.09001 * 109.47417 * 59.99251 * 19 18 17 39 39 H 1.09004 * 109.46957 * 299.99625 * 19 18 17 40 40 H 1.08007 * 120.41795 * 359.97438 * 21 20 19 41 41 H 1.08001 * 119.61256 * 179.75549 * 22 21 20 42 42 H 1.07997 * 119.61151 * 180.02562 * 24 23 22 43 43 H 1.08002 * 120.41594 * 180.02562 * 25 24 23 44 44 H 1.09002 * 109.48869 * 60.64202 * 26 17 16 45 45 H 1.09000 * 109.49127 * 180.71414 * 26 17 16 46 46 H 1.09003 * 109.49266 * 296.78516 * 27 14 13 47 47 H 1.09001 * 109.48705 * 56.82952 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 3.7013 1.3464 -0.0006 5 1 1.8825 2.3964 -1.2125 6 1 1.8825 2.3965 1.2125 7 6 2.0076 -1.2129 -0.0005 8 1 3.0827 -1.2158 0.1021 9 6 1.3077 -2.4326 -0.1353 10 6 2.0143 -3.6423 -0.2680 11 7 1.3561 -4.7786 -0.3930 12 6 0.0347 -4.7863 -0.3948 13 6 -0.6790 -3.5899 -0.2647 14 7 -2.0672 -3.6064 -0.2680 15 6 -2.5771 -4.9765 -0.4178 16 6 -4.1052 -4.9435 -0.4966 17 7 -4.6423 -4.3147 0.7181 18 6 -6.1112 -4.3323 0.7147 19 6 -6.6296 -3.9027 2.0886 20 6 -8.1365 -3.9202 2.0849 21 6 -8.8585 -2.7950 1.7176 22 6 -10.2395 -2.8470 1.7307 23 7 -10.8696 -3.9525 2.0768 24 6 -10.2156 -5.0427 2.4271 25 6 -8.8339 -5.0640 2.4427 26 6 -4.1324 -2.9446 0.8680 27 6 -2.6042 -2.9782 0.9471 28 7 -0.0323 -2.4425 -0.1439 29 1 -0.4849 0.8401 0.0004 30 1 3.0943 -3.6405 -0.2666 31 1 -0.4971 -5.7208 -0.4972 32 1 -2.2701 -5.5747 0.4400 33 1 -2.1754 -5.4166 -1.3306 34 1 -4.4872 -5.9611 -0.5787 35 1 -4.4119 -4.3680 -1.3701 36 1 -6.4620 -5.3401 0.4928 37 1 -6.4810 -3.6434 -0.0448 38 1 -6.2788 -2.8949 2.3105 39 1 -6.2598 -4.5916 2.8481 40 1 -8.3481 -1.8880 1.4288 41 1 -10.8091 -1.9735 1.4498 42 1 -10.7663 -5.9296 2.7040 43 1 -8.3040 -5.9601 2.7301 44 1 -4.4394 -2.3464 0.0101 45 1 -4.5342 -2.5048 1.7809 46 1 -2.2975 -3.5540 1.8203 47 1 -2.2219 -1.9608 1.0298 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165060356.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:40:35 Heat of formation + Delta-G solvation = 80.170502 kcal Electronic energy + Delta-G solvation = -28346.429732 eV Core-core repulsion = 24528.431165 eV Total energy + Delta-G solvation = -3817.998566 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.47435 -41.06192 -39.84863 -37.25311 -35.88374 -34.91768 -33.62283 -32.10008 -32.05537 -31.70203 -30.11456 -27.90887 -27.21676 -25.17205 -24.34839 -24.26470 -23.50480 -23.00997 -21.95567 -20.90876 -19.46114 -18.25199 -17.68428 -17.39340 -17.33157 -16.90676 -16.70693 -16.45303 -16.10504 -16.04682 -15.85108 -15.45751 -15.20057 -14.86874 -14.72811 -14.67680 -14.41258 -14.01452 -13.55975 -13.36628 -13.31113 -13.12538 -13.01179 -12.85124 -12.68038 -12.58563 -12.27778 -12.14746 -12.08244 -11.83947 -11.70289 -11.61456 -11.41519 -11.23663 -10.46208 -10.39589 -10.28002 -10.05244 -9.42234 -9.37294 -8.86497 -8.33518 -6.66973 0.24060 0.30978 0.62533 1.11105 1.41788 1.52490 1.57753 2.19292 2.64214 2.76509 2.82721 2.94643 3.62657 3.73776 3.75497 3.82876 3.89994 3.98218 4.04435 4.10694 4.20111 4.22684 4.25184 4.28751 4.34941 4.37803 4.46189 4.55740 4.58807 4.63139 4.76781 4.79049 4.80610 4.86266 4.88451 4.96655 5.01381 5.03518 5.08818 5.11246 5.16506 5.20370 5.48284 5.60493 5.82102 5.85802 5.98507 6.03445 6.13181 6.21680 6.58045 6.77224 7.06400 7.35361 7.94843 8.30868 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.015960 B = 0.002303 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.916215 B =12152.628663 C =13644.453795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.736 5.736 2 C 0.022 3.978 3 Si 0.993 3.007 4 H -0.250 1.250 5 H -0.268 1.268 6 H -0.264 1.264 7 C -0.434 4.434 8 H 0.103 0.897 9 C 0.195 3.805 10 C -0.108 4.108 11 N -0.426 5.426 12 C -0.166 4.166 13 C 0.284 3.716 14 N -0.482 5.482 15 C 0.060 3.940 16 C 0.067 3.933 17 N -0.542 5.542 18 C 0.069 3.931 19 C -0.074 4.074 20 C -0.040 4.040 21 C -0.176 4.176 22 C 0.086 3.914 23 N -0.520 5.520 24 C 0.087 3.913 25 C -0.169 4.169 26 C 0.070 3.930 27 C 0.082 3.918 28 N -0.494 5.494 29 H 0.283 0.717 30 H 0.146 0.854 31 H 0.154 0.846 32 H 0.049 0.951 33 H 0.086 0.914 34 H 0.111 0.889 35 H 0.038 0.962 36 H 0.089 0.911 37 H 0.034 0.966 38 H 0.078 0.922 39 H 0.090 0.910 40 H 0.146 0.854 41 H 0.171 0.829 42 H 0.174 0.826 43 H 0.155 0.845 44 H 0.036 0.964 45 H 0.100 0.900 46 H 0.027 0.973 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.845 -4.112 3.994 18.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.357 5.357 2 C -0.202 4.202 3 Si 0.812 3.188 4 H -0.174 1.174 5 H -0.193 1.193 6 H -0.188 1.188 7 C -0.465 4.465 8 H 0.121 0.879 9 C 0.068 3.932 10 C -0.278 4.278 11 N -0.137 5.137 12 C -0.327 4.327 13 C 0.041 3.959 14 N -0.200 5.200 15 C -0.068 4.068 16 C -0.061 4.061 17 N -0.267 5.267 18 C -0.058 4.058 19 C -0.112 4.112 20 C -0.049 4.049 21 C -0.196 4.196 22 C -0.070 4.070 23 N -0.230 5.230 24 C -0.069 4.069 25 C -0.189 4.189 26 C -0.059 4.059 27 C -0.045 4.045 28 N -0.216 5.216 29 H 0.094 0.906 30 H 0.163 0.837 31 H 0.171 0.829 32 H 0.067 0.933 33 H 0.104 0.896 34 H 0.129 0.871 35 H 0.056 0.944 36 H 0.107 0.893 37 H 0.052 0.948 38 H 0.096 0.904 39 H 0.108 0.892 40 H 0.163 0.837 41 H 0.188 0.812 42 H 0.191 0.809 43 H 0.172 0.828 44 H 0.054 0.946 45 H 0.118 0.882 46 H 0.046 0.954 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -19.034 -4.021 3.991 19.860 hybrid contribution 1.486 0.760 -0.316 1.699 sum -17.548 -3.261 3.675 18.223 Atomic orbital electron populations 1.70192 1.08975 1.29658 1.26829 1.27095 0.95805 1.04742 0.92517 0.84993 0.79578 0.75409 0.78811 1.17355 1.19332 1.18846 1.20087 0.95794 0.89795 1.40860 0.87935 1.19706 0.88758 0.94534 0.90229 1.23248 0.99910 0.89401 1.15193 1.67568 1.09323 1.30152 1.06704 1.23046 0.90880 0.97514 1.21310 1.21072 0.90501 0.91220 0.93111 1.58547 1.03651 1.20189 1.37660 1.22353 0.95600 0.86974 1.01863 1.22162 0.92319 1.00919 0.90695 1.62179 1.08372 1.18111 1.38067 1.22013 0.85687 1.02056 0.96069 1.20588 0.88993 1.03574 0.98022 1.20423 0.96371 0.93568 0.94545 1.22300 0.95572 1.00022 1.01659 1.23092 0.92429 0.96359 0.95125 1.67691 1.42472 1.00751 1.12105 1.23170 0.92288 0.96602 0.94887 1.22328 0.95579 0.99564 1.01416 1.22126 0.92244 0.89672 1.01814 1.21982 0.95150 0.99269 0.88099 1.69169 1.08239 1.23625 1.20609 0.90576 0.83670 0.82901 0.93296 0.89599 0.87130 0.94379 0.89306 0.94780 0.90360 0.89192 0.83654 0.81236 0.80850 0.82779 0.94554 0.88193 0.95441 0.91139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -37.56 11.51 21.84 0.25 -37.30 16 2 C 0.02 1.08 5.49 85.30 0.47 1.55 16 3 Si 0.99 35.80 29.56 68.60 2.03 37.83 16 4 H -0.25 -8.64 7.11 99.48 0.71 -7.93 16 5 H -0.27 -9.48 7.11 99.48 0.71 -8.77 16 6 H -0.26 -9.11 7.11 99.48 0.71 -8.40 16 7 C -0.43 -22.50 9.15 23.46 0.21 -22.29 16 8 H 0.10 4.87 7.86 -2.91 -0.02 4.85 16 9 C 0.19 10.78 6.54 40.16 0.26 11.04 16 10 C -0.11 -5.64 10.97 85.29 0.94 -4.71 16 11 N -0.43 -21.72 10.47 -192.24 -2.01 -23.73 16 12 C -0.17 -7.93 10.00 85.05 0.85 -7.08 16 13 C 0.28 13.91 6.44 133.35 0.86 14.77 16 14 N -0.48 -19.40 4.78 -700.87 -3.35 -22.76 16 15 C 0.06 1.85 4.28 86.31 0.37 2.22 16 16 C 0.07 1.58 5.61 86.31 0.48 2.06 16 17 N -0.54 -12.35 4.71 -895.70 -4.22 -16.57 16 18 C 0.07 1.18 4.94 86.30 0.43 1.60 16 19 C -0.07 -1.11 5.32 29.85 0.16 -0.95 16 20 C -0.04 -0.61 5.17 -19.67 -0.10 -0.72 16 21 C -0.18 -2.69 9.82 22.36 0.22 -2.47 16 22 C 0.09 1.42 11.18 84.68 0.95 2.37 16 23 N -0.52 -10.08 10.36 -195.85 -2.03 -12.11 16 24 C 0.09 1.34 11.18 84.68 0.95 2.28 16 25 C -0.17 -2.34 9.82 22.36 0.22 -2.12 16 26 C 0.07 1.88 5.41 86.31 0.47 2.35 16 27 C 0.08 3.03 5.47 86.31 0.47 3.50 16 28 N -0.49 -27.21 7.43 -186.00 -1.38 -28.59 16 29 H 0.28 12.96 8.29 -92.71 -0.77 12.20 16 30 H 0.15 6.86 8.06 -2.91 -0.02 6.83 16 31 H 0.15 6.26 5.78 -2.91 -0.02 6.25 16 32 H 0.05 1.55 7.57 -2.39 -0.02 1.53 16 33 H 0.09 2.62 7.15 -2.39 -0.02 2.60 16 34 H 0.11 1.96 8.07 -2.38 -0.02 1.94 16 35 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.09 1.31 8.03 -2.39 -0.02 1.29 16 37 H 0.03 0.61 8.12 -2.38 -0.02 0.59 16 38 H 0.08 1.21 6.46 -2.39 -0.02 1.19 16 39 H 0.09 1.33 8.10 -2.38 -0.02 1.31 16 40 H 0.15 1.80 8.06 -2.91 -0.02 1.77 16 41 H 0.17 2.00 8.06 -2.91 -0.02 1.98 16 42 H 0.17 1.75 8.06 -2.91 -0.02 1.72 16 43 H 0.15 1.46 8.06 -2.91 -0.02 1.44 16 44 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.10 2.28 6.34 -2.39 -0.02 2.27 16 46 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 47 H 0.07 3.11 7.69 -2.39 -0.02 3.09 16 Total: -1.00 -67.55 381.11 -1.54 -69.09 By element: Atomic # 1 Polarization: 29.76 SS G_CDS: 0.98 Total: 30.73 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: 8.20 Total: 3.41 kcal Atomic # 7 Polarization: -128.32 SS G_CDS: -12.74 Total: -141.06 kcal Atomic # 14 Polarization: 35.80 SS G_CDS: 2.03 Total: 37.83 kcal Total: -67.55 -1.54 -69.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165060356.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.257 kcal (2) G-P(sol) polarization free energy of solvation -67.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds