Wall clock time and date at job start Tue Mar 31 2020 22:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35725 * 117.00005 * 2 1 4 4 C 1.39359 * 120.35921 * 0.02562 * 3 2 1 5 5 N 1.31289 * 120.87751 * 180.02562 * 4 3 2 6 6 C 1.32882 * 121.72134 * 359.97438 * 5 4 3 7 7 C 1.47759 * 119.69152 * 180.02562 * 6 5 4 8 8 O 1.21562 * 120.00413 * 179.97438 * 7 6 5 9 9 N 1.34776 * 119.99657 * 359.97175 * 7 6 5 10 10 C 1.46500 * 120.00033 * 180.02562 * 9 7 6 11 11 H 1.08997 * 109.47454 * 325.00069 * 10 9 7 12 12 C 1.52997 * 109.46916 * 85.00393 * 10 9 7 13 13 C 1.53002 * 109.46957 * 205.00165 * 10 9 7 14 14 C 1.53000 * 109.47006 * 65.00394 * 13 10 9 15 15 C 1.53001 * 109.46922 * 179.97438 * 14 13 10 16 16 C 1.53003 * 109.46947 * 179.97438 * 15 14 13 17 17 N 1.46501 * 109.46943 * 180.02562 * 16 15 14 18 18 C 1.36935 * 120.00027 * 180.02562 * 17 16 15 19 19 H 1.08003 * 120.00068 * 0.02562 * 18 17 16 20 20 C 1.38813 * 120.00246 * 179.97438 * 18 17 16 21 21 N 1.31612 * 119.99861 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00037 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47461 * 59.99916 * 22 20 18 24 24 H 1.48501 * 109.47144 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.46829 * 299.99725 * 22 20 18 26 26 C 1.39725 * 120.62766 * 359.97438 * 6 5 4 27 27 F 1.35092 * 120.46526 * 179.74737 * 26 6 5 28 28 C 1.38687 * 119.06417 * 0.02562 * 26 6 5 29 29 H 1.08998 * 109.46934 * 299.99608 * 1 2 3 30 30 H 1.08998 * 109.47040 * 59.99247 * 1 2 3 31 31 H 1.09001 * 109.47069 * 179.97438 * 1 2 3 32 32 H 1.08003 * 119.56051 * 0.03734 * 4 3 2 33 33 H 0.97003 * 120.00315 * 0.02562 * 9 7 6 34 34 H 1.09002 * 109.47284 * 60.00079 * 12 10 9 35 35 H 1.09003 * 109.47045 * 179.97438 * 12 10 9 36 36 H 1.09000 * 109.47395 * 299.99842 * 12 10 9 37 37 H 1.09001 * 109.46881 * 185.00051 * 13 10 9 38 38 H 1.09000 * 109.47480 * 304.99935 * 13 10 9 39 39 H 1.09001 * 109.47021 * 299.99571 * 14 13 10 40 40 H 1.08995 * 109.47411 * 59.99970 * 14 13 10 41 41 H 1.09001 * 109.47235 * 299.99822 * 15 14 13 42 42 H 1.09000 * 109.47209 * 59.99758 * 15 14 13 43 43 H 1.08993 * 109.47332 * 300.00454 * 16 15 14 44 44 H 1.09003 * 109.46806 * 60.00772 * 16 15 14 45 45 H 0.96996 * 120.00212 * 359.97438 * 17 16 15 46 46 H 0.97009 * 120.00216 * 180.02562 * 21 20 18 47 47 H 1.07996 * 120.78796 * 179.97438 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 1.2936 2.3828 0.0005 5 7 1.8790 3.5579 0.0000 6 6 3.2023 3.6793 -0.0005 7 6 3.8139 5.0244 -0.0005 8 8 5.0238 5.1420 -0.0005 9 7 3.0303 6.1209 -0.0005 10 6 3.6366 7.4545 -0.0010 11 1 4.5535 7.4371 0.5881 12 6 3.9615 7.8664 -1.4382 13 6 2.6577 8.4600 0.6087 14 6 2.4294 8.1198 2.0829 15 6 1.4510 9.1257 2.6927 16 6 1.2222 8.7851 4.1667 17 7 0.2850 9.7479 4.7505 18 6 -0.0725 9.6427 6.0682 19 1 0.3368 8.8502 6.6772 20 6 -0.9602 10.5552 6.6216 21 7 -1.4579 11.5218 5.8799 22 14 -1.4473 10.4120 8.4193 23 1 -0.2365 10.5278 9.2710 24 1 -2.3990 11.4992 8.7623 25 1 -2.0935 9.0957 8.6536 26 6 4.0209 2.5470 0.0000 27 9 5.3659 2.6742 -0.0057 28 6 3.4333 1.2908 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 0.2151 2.3248 0.0016 33 1 2.0648 6.0271 -0.0001 34 1 3.0446 7.8839 -2.0273 35 1 4.4122 8.8589 -1.4387 36 1 4.6589 7.1501 -1.8727 37 1 3.0717 9.4651 0.5277 38 1 1.7090 8.4137 0.0740 39 1 2.0154 7.1148 2.1639 40 1 3.3780 8.1662 2.6176 41 1 1.8654 10.1306 2.6117 42 1 0.5023 9.0797 2.1581 43 1 0.8078 7.7803 4.2474 44 1 2.1709 8.8309 4.7017 45 1 -0.0818 10.4603 4.2040 46 1 -2.0779 12.1598 6.2666 47 1 4.0395 0.3970 0.0005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171160737.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:07 Heat of formation + Delta-G solvation = -85.136380 kcal Electronic energy + Delta-G solvation = -28498.821219 eV Core-core repulsion = 24210.592432 eV Total energy + Delta-G solvation = -4288.228787 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.37706 -41.34232 -39.96821 -38.50775 -36.91004 -35.22745 -33.35996 -32.88295 -31.76804 -30.81433 -30.05926 -28.21444 -27.40603 -25.29281 -24.23967 -23.70705 -22.29537 -21.38500 -20.72031 -20.56617 -19.14709 -18.61760 -18.08106 -16.97359 -16.81747 -16.73147 -16.40976 -16.05809 -15.53610 -15.25395 -15.08657 -14.84294 -14.64028 -14.09058 -13.94722 -13.84292 -13.69143 -13.42717 -13.23463 -13.10351 -12.89494 -12.85944 -12.68286 -12.31938 -12.16619 -11.71935 -11.42124 -11.22788 -10.96873 -10.77504 -10.66566 -10.62368 -10.40538 -10.24781 -10.10735 -10.06659 -9.97108 -9.63244 -9.29361 -9.04897 -8.82337 -6.87013 -5.72455 -3.00605 0.03738 0.39873 2.27660 2.33365 2.82613 3.25754 3.46497 3.50293 3.51801 3.56087 3.63939 3.85776 4.18876 4.35287 4.40934 4.52199 4.56118 4.67989 4.73024 4.89734 4.93382 5.04350 5.04570 5.24433 5.31019 5.45590 5.50196 5.58663 5.66067 5.74396 5.75332 5.83337 5.94519 6.00645 6.15709 6.27017 6.36253 6.38012 6.42178 6.43547 6.52308 6.94775 6.96264 6.98717 7.37137 7.73251 7.98818 8.47125 9.57623 10.17403 10.52153 11.50681 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009915 B = 0.002176 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2823.200610 B =12863.950395 C =14776.335180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.302 6.302 3 C 0.133 3.867 4 C 0.011 3.989 5 N -0.389 5.389 6 C 0.006 3.994 7 C 0.574 3.426 8 O -0.526 6.526 9 N -0.700 5.700 10 C 0.139 3.861 11 H 0.091 0.909 12 C -0.163 4.163 13 C -0.126 4.126 14 C -0.115 4.115 15 C -0.125 4.125 16 C 0.152 3.848 17 N -0.735 5.735 18 C -0.238 4.238 19 H 0.069 0.931 20 C -0.016 4.016 21 N -0.935 5.935 22 Si 0.908 3.092 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C 0.157 3.843 27 F -0.097 7.097 28 C -0.162 4.162 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.109 0.891 32 H 0.175 0.825 33 H 0.410 0.590 34 H 0.057 0.943 35 H 0.068 0.932 36 H 0.058 0.942 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.016 0.984 44 H 0.016 0.984 45 H 0.383 0.617 46 H 0.255 0.745 47 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.929 -22.883 -19.924 31.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.212 6.212 3 C 0.084 3.916 4 C -0.152 4.152 5 N -0.101 5.101 6 C -0.134 4.134 7 C 0.358 3.642 8 O -0.401 6.401 9 N -0.352 5.352 10 C 0.035 3.965 11 H 0.109 0.891 12 C -0.221 4.221 13 C -0.164 4.164 14 C -0.153 4.153 15 C -0.163 4.163 16 C 0.025 3.975 17 N -0.379 5.379 18 C -0.369 4.369 19 H 0.087 0.913 20 C -0.212 4.212 21 N -0.584 5.584 22 Si 0.739 3.261 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 C 0.133 3.867 27 F -0.075 7.075 28 C -0.189 4.189 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.128 0.872 32 H 0.192 0.808 33 H 0.247 0.753 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.099 0.901 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.034 0.966 44 H 0.034 0.966 45 H 0.217 0.783 46 H 0.065 0.935 47 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 7.440 -22.244 -19.748 30.661 hybrid contribution -0.530 -0.610 0.879 1.194 sum 6.911 -22.853 -18.869 30.431 Atomic orbital electron populations 1.23312 0.76666 1.05231 1.02379 1.86078 1.22689 1.25353 1.87130 1.20034 0.92060 0.86215 0.93297 1.23098 1.01253 0.86337 1.04493 1.67473 1.09223 1.26975 1.06394 1.21269 0.89455 0.94081 1.08579 1.17478 0.86336 0.83152 0.77217 1.90860 1.13158 1.86259 1.49840 1.45896 1.10823 1.05118 1.73337 1.21130 0.97571 0.80820 0.96931 0.89112 1.22178 1.01875 1.01859 0.96209 1.21937 0.99148 0.98721 0.96606 1.21530 0.99981 0.99632 0.94185 1.21719 0.98765 0.98762 0.97031 1.20649 0.92989 0.93098 0.90792 1.42384 1.52461 1.33303 1.09734 1.19215 1.20726 1.09990 0.87015 0.91315 1.24744 1.00294 0.98008 0.98147 1.69652 1.35485 1.18018 1.35286 0.86255 0.77968 0.76926 0.84985 1.21286 1.21674 1.21300 1.18232 0.78763 0.92766 0.96899 1.91654 1.27188 1.96407 1.92261 1.20841 0.92948 0.97806 1.07257 0.91513 0.91685 0.87231 0.80797 0.75329 0.92398 0.91347 0.92247 0.90065 0.91220 0.92038 0.91987 0.92058 0.92111 0.96637 0.96593 0.78348 0.93512 0.81912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.04 9.82 101.05 0.99 1.04 16 2 O -0.30 -1.78 10.50 -18.88 -0.20 -1.98 16 3 C 0.13 0.95 6.72 -38.86 -0.26 0.69 16 4 C 0.01 0.08 10.21 -17.37 -0.18 -0.10 16 5 N -0.39 -3.74 9.52 -9.63 -0.09 -3.84 16 6 C 0.01 0.06 6.75 -82.97 -0.56 -0.50 16 7 C 0.57 7.35 7.76 -12.37 -0.10 7.26 16 8 O -0.53 -8.23 14.97 5.31 0.08 -8.15 16 9 N -0.70 -7.61 4.52 -54.78 -0.25 -7.86 16 10 C 0.14 1.47 2.57 -67.93 -0.17 1.29 16 11 H 0.09 1.10 7.58 -51.93 -0.39 0.70 16 12 C -0.16 -1.52 9.48 37.16 0.35 -1.17 16 13 C -0.13 -1.30 4.75 -26.73 -0.13 -1.43 16 14 C -0.12 -1.50 5.10 -26.73 -0.14 -1.63 16 15 C -0.12 -2.04 5.33 -26.73 -0.14 -2.18 16 16 C 0.15 3.21 6.26 -4.04 -0.03 3.19 16 17 N -0.73 -19.48 5.60 -59.91 -0.34 -19.81 16 18 C -0.24 -6.92 9.99 -15.06 -0.15 -7.08 16 19 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 20 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 21 N -0.94 -28.92 13.06 55.49 0.72 -28.20 16 22 Si 0.91 22.86 29.55 -169.99 -5.02 17.84 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 26 C 0.16 1.64 7.31 -38.86 -0.28 1.36 16 27 F -0.10 -1.19 15.54 2.25 0.03 -1.15 16 28 C -0.16 -1.28 10.10 -39.12 -0.40 -1.68 16 29 H 0.07 0.12 7.67 -51.93 -0.40 -0.28 16 30 H 0.06 0.08 7.67 -51.93 -0.40 -0.32 16 31 H 0.11 0.08 8.14 -51.93 -0.42 -0.34 16 32 H 0.18 0.71 6.31 -52.48 -0.33 0.38 16 33 H 0.41 4.00 7.92 -40.82 -0.32 3.68 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.80 7.75 -51.93 -0.40 0.40 16 40 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 45 H 0.38 10.55 7.67 -40.82 -0.31 10.24 16 46 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 47 H 0.16 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 398.56 15.07 6.01 6.01 Total: -1.00 -35.20 398.56 -7.51 -42.72 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -7.18 Total: 5.94 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: -1.28 Total: -1.52 kcal Atomic # 7 Polarization: -59.75 SS G_CDS: 0.05 Total: -59.70 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: -0.12 Total: -10.13 kcal Atomic # 9 Polarization: -1.19 SS G_CDS: 0.03 Total: -1.15 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -5.02 Total: 17.84 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -35.20 -7.51 -42.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171160737.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.420 kcal (2) G-P(sol) polarization free energy of solvation -35.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds