Wall clock time and date at job start Tue Mar 31 2020 22:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35725 * 117.00005 * 2 1 4 4 C 1.39359 * 120.35921 * 0.02562 * 3 2 1 5 5 N 1.31289 * 120.87751 * 180.02562 * 4 3 2 6 6 C 1.32882 * 121.72134 * 359.97438 * 5 4 3 7 7 C 1.47759 * 119.69152 * 180.02562 * 6 5 4 8 8 O 1.21562 * 120.00413 * 179.97438 * 7 6 5 9 9 N 1.34776 * 119.99657 * 359.97175 * 7 6 5 10 10 C 1.46500 * 120.00033 * 180.02562 * 9 7 6 11 11 H 1.08997 * 109.47454 * 325.00069 * 10 9 7 12 12 C 1.52997 * 109.46916 * 85.00393 * 10 9 7 13 13 C 1.53002 * 109.46957 * 205.00165 * 10 9 7 14 14 C 1.53000 * 109.47006 * 65.00394 * 13 10 9 15 15 C 1.53001 * 109.46922 * 179.97438 * 14 13 10 16 16 C 1.53003 * 109.46947 * 179.97438 * 15 14 13 17 17 N 1.46501 * 109.46943 * 180.02562 * 16 15 14 18 18 C 1.36935 * 120.00027 * 180.02562 * 17 16 15 19 19 H 1.08003 * 120.00068 * 0.02562 * 18 17 16 20 20 C 1.38813 * 120.00246 * 179.97438 * 18 17 16 21 21 N 1.31612 * 119.99861 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00037 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47461 * 59.99916 * 22 20 18 24 24 H 1.48501 * 109.47144 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.46829 * 299.99725 * 22 20 18 26 26 C 1.39725 * 120.62766 * 359.97438 * 6 5 4 27 27 F 1.35092 * 120.46526 * 179.74737 * 26 6 5 28 28 C 1.38687 * 119.06417 * 0.02562 * 26 6 5 29 29 H 1.08998 * 109.46934 * 299.99608 * 1 2 3 30 30 H 1.08998 * 109.47040 * 59.99247 * 1 2 3 31 31 H 1.09001 * 109.47069 * 179.97438 * 1 2 3 32 32 H 1.08003 * 119.56051 * 0.03734 * 4 3 2 33 33 H 0.97003 * 120.00315 * 0.02562 * 9 7 6 34 34 H 1.09002 * 109.47284 * 60.00079 * 12 10 9 35 35 H 1.09003 * 109.47045 * 179.97438 * 12 10 9 36 36 H 1.09000 * 109.47395 * 299.99842 * 12 10 9 37 37 H 1.09001 * 109.46881 * 185.00051 * 13 10 9 38 38 H 1.09000 * 109.47480 * 304.99935 * 13 10 9 39 39 H 1.09001 * 109.47021 * 299.99571 * 14 13 10 40 40 H 1.08995 * 109.47411 * 59.99970 * 14 13 10 41 41 H 1.09001 * 109.47235 * 299.99822 * 15 14 13 42 42 H 1.09000 * 109.47209 * 59.99758 * 15 14 13 43 43 H 1.08993 * 109.47332 * 300.00454 * 16 15 14 44 44 H 1.09003 * 109.46806 * 60.00772 * 16 15 14 45 45 H 0.96996 * 120.00212 * 359.97438 * 17 16 15 46 46 H 0.97009 * 120.00216 * 180.02562 * 21 20 18 47 47 H 1.07996 * 120.78796 * 179.97438 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 1.2936 2.3828 0.0005 5 7 1.8790 3.5579 0.0000 6 6 3.2023 3.6793 -0.0005 7 6 3.8139 5.0244 -0.0005 8 8 5.0238 5.1420 -0.0005 9 7 3.0303 6.1209 -0.0005 10 6 3.6366 7.4545 -0.0010 11 1 4.5535 7.4371 0.5881 12 6 3.9615 7.8664 -1.4382 13 6 2.6577 8.4600 0.6087 14 6 2.4294 8.1198 2.0829 15 6 1.4510 9.1257 2.6927 16 6 1.2222 8.7851 4.1667 17 7 0.2850 9.7479 4.7505 18 6 -0.0725 9.6427 6.0682 19 1 0.3368 8.8502 6.6772 20 6 -0.9602 10.5552 6.6216 21 7 -1.4579 11.5218 5.8799 22 14 -1.4473 10.4120 8.4193 23 1 -0.2365 10.5278 9.2710 24 1 -2.3990 11.4992 8.7623 25 1 -2.0935 9.0957 8.6536 26 6 4.0209 2.5470 0.0000 27 9 5.3659 2.6742 -0.0057 28 6 3.4333 1.2908 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 0.2151 2.3248 0.0016 33 1 2.0648 6.0271 -0.0001 34 1 3.0446 7.8839 -2.0273 35 1 4.4122 8.8589 -1.4387 36 1 4.6589 7.1501 -1.8727 37 1 3.0717 9.4651 0.5277 38 1 1.7090 8.4137 0.0740 39 1 2.0154 7.1148 2.1639 40 1 3.3780 8.1662 2.6176 41 1 1.8654 10.1306 2.6117 42 1 0.5023 9.0797 2.1581 43 1 0.8078 7.7803 4.2474 44 1 2.1709 8.8309 4.7017 45 1 -0.0818 10.4603 4.2040 46 1 -2.0779 12.1598 6.2666 47 1 4.0395 0.3970 0.0005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171160737.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:06 Heat of formation + Delta-G solvation = -109.517461 kcal Electronic energy + Delta-G solvation = -28499.878462 eV Core-core repulsion = 24210.592432 eV Total energy + Delta-G solvation = -4289.286030 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.19791 -41.97866 -40.78773 -39.10741 -38.02084 -36.83805 -34.81108 -33.69580 -32.96621 -32.08983 -31.06694 -28.81957 -28.50463 -26.12147 -25.78276 -24.47131 -23.67054 -22.42240 -22.01639 -21.55508 -19.71900 -19.36565 -19.12659 -18.75274 -17.45656 -17.39538 -17.30453 -16.69344 -16.63398 -16.33517 -16.21822 -15.92949 -15.65299 -15.39065 -15.28010 -14.89194 -14.60801 -14.41159 -14.39299 -14.13987 -13.98377 -13.90513 -13.25699 -13.03350 -12.94941 -12.88375 -12.83681 -12.53561 -12.44746 -12.28810 -12.20001 -11.88475 -11.82378 -11.53535 -11.40344 -11.38416 -10.93384 -10.86588 -10.76211 -10.18145 -9.70663 -9.01953 -7.96524 -5.25996 -0.67252 -0.23200 1.46152 1.49892 1.53219 1.56199 1.79642 2.03514 2.49170 2.55320 2.87348 2.96929 3.31634 3.36399 3.51618 3.62439 3.72758 3.99156 4.02660 4.05756 4.14022 4.34819 4.38552 4.39094 4.41622 4.42221 4.60825 4.65022 4.67789 4.77752 4.81123 4.87415 4.93094 4.99137 5.01123 5.09486 5.12953 5.26598 5.31918 5.42718 5.45340 5.52854 5.55442 5.94523 6.24974 6.26219 6.54241 7.09434 7.31837 8.08275 8.32442 9.26943 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009915 B = 0.002176 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2823.200610 B =12863.950395 C =14776.335180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.307 6.307 3 C 0.146 3.854 4 C 0.018 3.982 5 N -0.398 5.398 6 C -0.019 4.019 7 C 0.569 3.431 8 O -0.565 6.565 9 N -0.692 5.692 10 C 0.141 3.859 11 H 0.072 0.928 12 C -0.156 4.156 13 C -0.115 4.115 14 C -0.106 4.106 15 C -0.111 4.111 16 C 0.148 3.852 17 N -0.749 5.749 18 C -0.252 4.252 19 H 0.072 0.928 20 C -0.076 4.076 21 N -0.969 5.969 22 Si 0.976 3.024 23 H -0.279 1.279 24 H -0.292 1.292 25 H -0.276 1.276 26 C 0.138 3.862 27 F -0.115 7.115 28 C -0.161 4.161 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.127 0.873 32 H 0.208 0.792 33 H 0.417 0.583 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.042 0.958 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.061 0.939 40 H 0.056 0.944 41 H 0.059 0.941 42 H 0.063 0.937 43 H 0.016 0.984 44 H 0.012 0.988 45 H 0.375 0.625 46 H 0.253 0.747 47 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.507 -24.310 -20.212 32.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 O -0.218 6.218 3 C 0.096 3.904 4 C -0.146 4.146 5 N -0.110 5.110 6 C -0.156 4.156 7 C 0.354 3.646 8 O -0.444 6.444 9 N -0.343 5.343 10 C 0.037 3.963 11 H 0.090 0.910 12 C -0.215 4.215 13 C -0.153 4.153 14 C -0.144 4.144 15 C -0.149 4.149 16 C 0.022 3.978 17 N -0.391 5.391 18 C -0.384 4.384 19 H 0.090 0.910 20 C -0.268 4.268 21 N -0.620 5.620 22 Si 0.805 3.195 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.202 1.202 26 C 0.115 3.885 27 F -0.093 7.093 28 C -0.187 4.187 29 H 0.094 0.906 30 H 0.099 0.901 31 H 0.146 0.854 32 H 0.225 0.775 33 H 0.254 0.746 34 H 0.088 0.912 35 H 0.100 0.900 36 H 0.061 0.939 37 H 0.110 0.890 38 H 0.102 0.898 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.082 0.918 43 H 0.034 0.966 44 H 0.030 0.970 45 H 0.206 0.794 46 H 0.062 0.938 47 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 6.022 -23.696 -20.047 31.617 hybrid contribution -0.185 -0.318 0.951 1.020 sum 5.837 -24.014 -19.095 31.231 Atomic orbital electron populations 1.23680 0.74570 1.06955 1.03599 1.86097 1.24801 1.24484 1.86399 1.20052 0.91772 0.86850 0.91757 1.23662 1.02705 0.85574 1.02673 1.67468 1.08338 1.28220 1.06952 1.21052 0.90311 0.93372 1.10890 1.17799 0.86026 0.84184 0.76582 1.90825 1.14744 1.86937 1.51873 1.45881 1.11020 1.04930 1.72474 1.21107 0.96878 0.80749 0.97586 0.90979 1.22115 1.02145 1.02046 0.95145 1.21845 0.99840 0.99057 0.94556 1.21428 0.98631 0.98569 0.95787 1.21587 0.99794 0.99561 0.93947 1.20844 0.91460 0.91935 0.93551 1.42615 1.53300 1.34038 1.09175 1.19619 1.20545 1.09919 0.88315 0.90982 1.25617 1.00655 0.97899 1.02644 1.69809 1.36217 1.18845 1.37107 0.85174 0.77631 0.77068 0.79672 1.20469 1.21776 1.20192 1.18442 0.78117 0.93722 0.98188 1.91600 1.28477 1.96580 1.92659 1.21011 0.93779 0.97354 1.06579 0.90553 0.90132 0.85449 0.77533 0.74561 0.91151 0.89982 0.93879 0.88959 0.89768 0.92066 0.92563 0.92176 0.91808 0.96619 0.96992 0.79363 0.93840 0.80166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.01 9.82 113.37 1.11 1.12 16 2 O -0.31 -2.80 10.50 -90.47 -0.95 -3.75 16 3 C 0.15 1.79 6.72 22.73 0.15 1.94 16 4 C 0.02 0.21 10.21 85.04 0.87 1.08 16 5 N -0.40 -7.25 9.52 -184.39 -1.76 -9.00 16 6 C -0.02 -0.42 6.75 41.86 0.28 -0.14 16 7 C 0.57 15.07 7.76 86.76 0.67 15.74 16 8 O -0.56 -18.71 14.97 -3.91 -0.06 -18.77 16 9 N -0.69 -14.91 4.52 -445.49 -2.01 -16.93 16 10 C 0.14 2.89 2.57 44.99 0.12 3.00 16 11 H 0.07 1.78 7.58 -2.39 -0.02 1.76 16 12 C -0.16 -2.77 9.48 71.98 0.68 -2.09 16 13 C -0.12 -2.19 4.75 30.60 0.15 -2.04 16 14 C -0.11 -2.64 5.10 30.59 0.16 -2.48 16 15 C -0.11 -3.52 5.33 30.60 0.16 -3.36 16 16 C 0.15 6.22 6.26 86.38 0.54 6.76 16 17 N -0.75 -39.81 5.60 -343.45 -1.92 -41.73 16 18 C -0.25 -14.65 9.99 84.03 0.84 -13.81 16 19 H 0.07 4.04 7.83 -2.91 -0.02 4.01 16 20 C -0.08 -4.46 5.50 84.86 0.47 -4.00 16 21 N -0.97 -60.25 13.06 21.65 0.28 -59.97 16 22 Si 0.98 46.78 29.55 68.60 2.03 48.81 16 23 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 24 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 25 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 26 C 0.14 2.98 7.31 22.74 0.17 3.15 16 27 F -0.12 -2.99 15.54 44.97 0.70 -2.29 16 28 C -0.16 -2.42 10.10 22.57 0.23 -2.19 16 29 H 0.08 0.00 7.67 -2.39 -0.02 -0.02 16 30 H 0.08 -0.10 7.67 -2.39 -0.02 -0.11 16 31 H 0.13 -0.23 8.14 -2.39 -0.02 -0.25 16 32 H 0.21 0.96 6.31 -2.91 -0.02 0.94 16 33 H 0.42 7.76 7.92 -92.71 -0.73 7.03 16 34 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.06 1.53 7.75 -2.39 -0.02 1.52 16 40 H 0.06 1.47 8.14 -2.39 -0.02 1.46 16 41 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 43 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 44 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 45 H 0.37 20.84 7.67 -92.71 -0.71 20.13 16 46 H 0.25 15.15 8.31 -92.70 -0.77 14.38 16 47 H 0.18 1.92 8.06 -2.91 -0.02 1.90 16 Total: -1.00 -76.89 398.56 2.46 -74.43 By element: Atomic # 1 Polarization: 26.97 SS G_CDS: -0.45 Total: 26.52 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: 6.59 Total: 2.68 kcal Atomic # 7 Polarization: -122.22 SS G_CDS: -5.41 Total: -127.63 kcal Atomic # 8 Polarization: -21.52 SS G_CDS: -1.01 Total: -22.52 kcal Atomic # 9 Polarization: -2.99 SS G_CDS: 0.70 Total: -2.29 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.81 kcal Total: -76.89 2.46 -74.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171160737.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.085 kcal (2) G-P(sol) polarization free energy of solvation -76.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds