Wall clock time and date at job start Tue Mar 31 2020 23:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45198 * 109.46759 * 2 1 4 4 C 1.34840 * 116.99653 * 179.97438 * 3 2 1 5 5 O 1.21598 * 120.00285 * 0.02562 * 4 3 2 6 6 C 1.46664 * 119.99917 * 179.97438 * 4 3 2 7 7 C 1.38150 * 119.99958 * 179.97438 * 6 4 3 8 8 N 1.34838 * 120.00018 * 187.77018 * 7 6 4 9 9 C 1.46497 * 120.00059 * 175.82911 * 8 7 6 10 10 C 1.53004 * 109.47143 * 154.99997 * 9 8 7 11 11 C 1.53000 * 109.46934 * 180.02562 * 10 9 8 12 12 C 1.52997 * 109.47040 * 299.99648 * 11 10 9 13 13 C 1.50707 * 109.46825 * 180.02562 * 12 11 10 14 14 H 1.07995 * 120.00167 * 0.02562 * 13 12 11 15 15 C 1.37875 * 119.99853 * 180.02562 * 13 12 11 16 16 N 1.31509 * 120.00123 * 179.72132 * 15 13 12 17 17 Si 1.86806 * 119.99967 * 359.97438 * 15 13 12 18 18 H 1.48502 * 109.46906 * 90.00251 * 17 15 13 19 19 H 1.48506 * 109.46816 * 210.00181 * 17 15 13 20 20 H 1.48496 * 109.47003 * 330.00236 * 17 15 13 21 21 C 1.52999 * 109.46965 * 60.00720 * 12 11 10 22 22 C 1.52996 * 109.47392 * 275.00183 * 9 8 7 23 23 C 1.46656 * 119.99952 * 0.02562 * 6 4 3 24 24 O 1.21604 * 119.99972 * 186.35417 * 23 6 4 25 25 O 1.34842 * 119.99971 * 6.35583 * 23 6 4 26 26 C 1.45201 * 116.99970 * 179.97438 * 25 23 6 27 27 C 1.52996 * 109.47307 * 179.97438 * 26 25 23 28 28 H 1.08995 * 109.47181 * 299.99892 * 1 2 3 29 29 H 1.08998 * 109.46963 * 60.00477 * 1 2 3 30 30 H 1.09004 * 109.47003 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47181 * 240.00108 * 2 1 3 32 32 H 1.09003 * 109.46955 * 120.00031 * 2 1 3 33 33 H 1.08000 * 120.00399 * 7.77564 * 7 6 4 34 34 H 0.96994 * 119.99996 * 355.83089 * 8 7 6 35 35 H 1.08999 * 109.47536 * 35.00286 * 9 8 7 36 36 H 1.08993 * 109.47045 * 59.99994 * 10 9 8 37 37 H 1.08999 * 109.47060 * 300.00320 * 10 9 8 38 38 H 1.09003 * 109.46873 * 179.97438 * 11 10 9 39 39 H 1.08993 * 109.47359 * 60.00065 * 11 10 9 40 40 H 1.08993 * 109.47384 * 300.00401 * 12 11 10 41 41 H 0.97003 * 120.00418 * 179.97438 * 16 15 13 42 42 H 1.08993 * 109.47330 * 59.99647 * 21 12 11 43 43 H 1.09001 * 109.47295 * 179.97438 * 21 12 11 44 44 H 1.09010 * 109.47179 * 300.00120 * 22 9 8 45 45 H 1.08994 * 109.47484 * 59.99473 * 22 9 8 46 46 H 1.08997 * 109.47575 * 300.00131 * 26 25 23 47 47 H 1.09003 * 109.46986 * 60.00287 * 26 25 23 48 48 H 1.09005 * 109.46975 * 300.00196 * 27 26 25 49 49 H 1.08995 * 109.47159 * 60.00069 * 27 26 25 50 50 H 1.08994 * 109.47399 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3507 1.5456 0.0005 5 8 4.0915 0.5814 0.0005 6 6 3.9112 2.9009 0.0000 7 6 5.2808 3.0820 0.0011 8 7 5.7975 4.3175 0.1585 9 6 7.2482 4.4984 0.2513 10 6 7.6149 5.9157 -0.1935 11 6 9.1302 6.1044 -0.0971 12 6 9.5796 5.8917 1.3498 13 6 11.0721 6.0782 1.4448 14 1 11.6428 6.3243 0.5616 15 6 11.7088 5.9346 2.6592 16 7 13.0119 6.0920 2.7411 17 14 10.7215 5.5097 4.1870 18 1 10.6463 4.0338 4.3331 19 1 11.3834 6.0923 5.3820 20 1 9.3502 6.0652 4.0605 21 6 9.2130 4.4744 1.7945 22 6 7.6972 4.2858 1.6984 23 6 3.0178 4.0640 -0.0005 24 8 3.4775 5.1837 -0.1175 25 8 1.6867 3.8917 0.1287 26 6 0.8634 5.0876 0.1203 27 6 -0.6073 4.6955 0.2762 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 5.9378 2.2340 -0.1242 34 1 5.2085 5.0864 0.2103 35 1 7.7467 3.7749 -0.3938 36 1 7.1166 6.6393 0.4516 37 1 7.2951 6.0672 -1.2244 38 1 9.3915 7.1140 -0.4144 39 1 9.6282 5.3809 -0.7424 40 1 9.0816 6.6152 1.9951 41 1 13.4599 5.9914 3.5956 42 1 9.7111 3.7508 1.1492 43 1 9.5336 4.3226 2.8252 44 1 7.1988 5.0094 2.3435 45 1 7.4360 3.2762 2.0153 46 1 1.1562 5.7363 0.9459 47 1 1.0000 5.6162 -0.8231 48 1 -0.8999 4.0471 -0.5498 49 1 -0.7443 4.1667 1.2194 50 1 -1.2254 5.5932 0.2694 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173327938.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:02 Heat of formation + Delta-G solvation = -176.014204 kcal Electronic energy + Delta-G solvation = -30177.936939 eV Core-core repulsion = 25976.934948 eV Total energy + Delta-G solvation = -4201.001991 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.75684 -39.80727 -39.15191 -37.16465 -36.36954 -35.70978 -32.97508 -32.23479 -31.63960 -31.14409 -30.43964 -29.03062 -25.26487 -24.07703 -23.75699 -22.70433 -22.32259 -21.99300 -21.24645 -20.33829 -19.12451 -18.45586 -17.23409 -16.85929 -16.72596 -16.58831 -16.27571 -16.18542 -15.63538 -14.89149 -14.51868 -14.28295 -14.08743 -13.91813 -13.79010 -13.62969 -13.29468 -13.16974 -12.97428 -12.92270 -12.89026 -12.50836 -12.10245 -12.01748 -11.99467 -11.87297 -11.77933 -11.60027 -11.52081 -11.07040 -10.83213 -10.74976 -10.68332 -10.59170 -10.50652 -10.15702 -10.14758 -9.97505 -9.73252 -9.21953 -9.05238 -8.60311 -8.20098 -6.13737 -4.13489 1.01198 2.21746 2.56909 2.77636 3.20366 3.24741 3.31723 3.34156 3.37821 4.34048 4.53205 4.71362 4.75832 4.79123 4.79654 4.83246 4.89708 4.91482 5.08361 5.11649 5.14266 5.16962 5.23807 5.29550 5.50717 5.58132 5.61021 5.62128 5.63839 5.71802 5.75582 5.79111 5.85012 5.90038 5.98471 6.01971 6.31332 6.35262 6.36686 6.52662 6.57368 6.69884 6.76276 6.83505 7.13011 7.32308 7.42735 7.69390 7.80921 7.99439 8.44930 8.90455 9.48530 10.99488 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.016868 B = 0.002469 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.569184 B =11335.776740 C =12016.442011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.063 3.937 3 O -0.340 6.340 4 C 0.538 3.462 5 O -0.543 6.543 6 C -0.396 4.396 7 C 0.336 3.664 8 N -0.650 5.650 9 C 0.121 3.879 10 C -0.126 4.126 11 C -0.095 4.095 12 C 0.011 3.989 13 C -0.515 4.515 14 H 0.074 0.926 15 C 0.069 3.931 16 N -0.900 5.900 17 Si 0.886 3.114 18 H -0.279 1.279 19 H -0.298 1.298 20 H -0.266 1.266 21 C -0.118 4.118 22 C -0.134 4.134 23 C 0.534 3.466 24 O -0.552 6.552 25 O -0.333 6.333 26 C 0.061 3.939 27 C -0.149 4.149 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.175 0.825 34 H 0.423 0.577 35 H 0.095 0.905 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.059 0.941 40 H 0.028 0.972 41 H 0.264 0.736 42 H 0.065 0.935 43 H 0.053 0.947 44 H 0.064 0.936 45 H 0.058 0.942 46 H 0.066 0.934 47 H 0.066 0.934 48 H 0.066 0.934 49 H 0.065 0.935 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.121 -7.549 -6.169 27.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.011 4.011 3 O -0.256 6.256 4 C 0.387 3.613 5 O -0.436 6.436 6 C -0.409 4.409 7 C 0.184 3.816 8 N -0.272 5.272 9 C 0.018 3.982 10 C -0.164 4.164 11 C -0.133 4.133 12 C -0.007 4.007 13 C -0.553 4.553 14 H 0.092 0.908 15 C -0.132 4.132 16 N -0.538 5.538 17 Si 0.716 3.284 18 H -0.206 1.206 19 H -0.225 1.225 20 H -0.191 1.191 21 C -0.156 4.156 22 C -0.173 4.173 23 C 0.386 3.614 24 O -0.446 6.446 25 O -0.249 6.249 26 C -0.013 4.013 27 C -0.206 4.206 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.192 0.808 34 H 0.274 0.726 35 H 0.113 0.887 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.046 0.954 41 H 0.074 0.926 42 H 0.084 0.916 43 H 0.071 0.929 44 H 0.083 0.917 45 H 0.077 0.923 46 H 0.084 0.916 47 H 0.084 0.916 48 H 0.085 0.915 49 H 0.084 0.916 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -25.482 -7.368 -6.063 27.210 hybrid contribution -0.612 -0.085 0.982 1.161 sum -26.094 -7.453 -5.080 27.609 Atomic orbital electron populations 1.21759 0.93007 1.02439 1.03424 1.22914 0.95046 0.80987 1.02190 1.86705 1.23545 1.30801 1.84540 1.20033 0.80535 0.88584 0.72109 1.90834 1.60389 1.42358 1.50067 1.18650 0.90627 0.89083 1.42570 1.22201 0.92738 0.89609 0.77041 1.46202 1.10499 1.09008 1.61479 1.21791 0.77219 1.00324 0.98833 1.21885 0.99777 0.93816 1.00894 1.21415 0.90751 1.01693 0.99412 1.19197 0.97342 0.91776 0.92428 1.21032 0.90116 1.48023 0.96106 0.90779 1.25039 0.94688 0.94717 0.98806 1.69891 1.08270 1.49930 1.25700 0.86870 0.80544 0.78263 0.82701 1.20572 1.22517 1.19082 1.22003 0.91106 1.01349 1.01183 1.22128 0.99442 1.01355 0.94355 1.20520 0.81394 0.87877 0.71601 1.90461 1.75734 1.26689 1.51751 1.86740 1.17977 1.36749 1.83426 1.22954 0.90267 0.85897 1.02202 1.21758 0.93007 1.02475 1.03388 0.91579 0.91646 0.90672 0.91647 0.91618 0.80785 0.72613 0.88717 0.91460 0.91866 0.91766 0.92210 0.95423 0.92620 0.91647 0.92909 0.91703 0.92302 0.91568 0.91565 0.91540 0.91568 0.90616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 10.29 37.16 0.38 -0.63 16 2 C 0.06 0.61 6.20 37.16 0.23 0.84 16 3 O -0.34 -4.29 8.33 -47.99 -0.40 -4.69 16 4 C 0.54 7.50 7.87 34.13 0.27 7.77 16 5 O -0.54 -8.41 16.10 -19.34 -0.31 -8.73 16 6 C -0.40 -5.24 6.01 -103.13 -0.62 -5.86 16 7 C 0.34 3.95 9.96 -16.26 -0.16 3.79 16 8 N -0.65 -7.95 4.93 -54.14 -0.27 -8.22 16 9 C 0.12 1.57 2.76 -67.93 -0.19 1.39 16 10 C -0.13 -1.75 5.39 -26.73 -0.14 -1.89 16 11 C -0.09 -1.64 5.14 -26.73 -0.14 -1.77 16 12 C 0.01 0.24 1.69 -91.77 -0.16 0.09 16 13 C -0.51 -13.63 9.14 -34.44 -0.31 -13.95 16 14 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 15 C 0.07 1.92 5.45 -17.82 -0.10 1.83 16 16 N -0.90 -26.83 13.96 55.43 0.77 -26.06 16 17 Si 0.89 21.21 24.37 -169.99 -4.14 17.07 16 18 H -0.28 -6.49 6.87 56.52 0.39 -6.10 16 19 H -0.30 -7.25 7.11 56.52 0.40 -6.85 16 20 H -0.27 -6.06 6.53 56.52 0.37 -5.69 16 21 C -0.12 -2.27 4.69 -26.71 -0.13 -2.40 16 22 C -0.13 -2.04 5.50 -26.71 -0.15 -2.19 16 23 C 0.53 7.36 7.83 34.13 0.27 7.63 16 24 O -0.55 -8.15 13.43 -19.35 -0.26 -8.41 16 25 O -0.33 -4.20 8.34 -47.99 -0.40 -4.60 16 26 C 0.06 0.59 6.20 37.16 0.23 0.82 16 27 C -0.15 -1.03 10.29 37.16 0.38 -0.65 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.18 1.74 7.61 -52.49 -0.40 1.34 16 34 H 0.42 5.63 5.03 -41.28 -0.21 5.42 16 35 H 0.09 1.10 8.07 -51.93 -0.42 0.68 16 36 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.03 0.62 7.20 -51.93 -0.37 0.24 16 41 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 42 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.05 1.12 3.27 -51.93 -0.17 0.95 16 44 H 0.06 1.02 8.14 -51.92 -0.42 0.60 16 45 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 46 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 49 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 50 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 400.26 15.07 6.03 6.03 Total: -1.00 -31.57 400.26 -7.66 -39.23 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -8.36 Total: 3.58 kcal Atomic # 6 Polarization: -4.86 SS G_CDS: -0.33 Total: -5.19 kcal Atomic # 7 Polarization: -34.79 SS G_CDS: 0.51 Total: -34.28 kcal Atomic # 8 Polarization: -25.06 SS G_CDS: -1.37 Total: -26.43 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.14 Total: 17.07 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -31.57 -7.66 -39.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173327938.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.785 kcal (2) G-P(sol) polarization free energy of solvation -31.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds