Wall clock time and date at job start Tue Mar 31 2020 23:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45198 * 109.46759 * 2 1 4 4 C 1.34840 * 116.99653 * 179.97438 * 3 2 1 5 5 O 1.21598 * 120.00285 * 0.02562 * 4 3 2 6 6 C 1.46664 * 119.99917 * 179.97438 * 4 3 2 7 7 C 1.38150 * 119.99958 * 179.97438 * 6 4 3 8 8 N 1.34838 * 120.00018 * 187.77018 * 7 6 4 9 9 C 1.46497 * 120.00059 * 175.82911 * 8 7 6 10 10 C 1.53004 * 109.47143 * 154.99997 * 9 8 7 11 11 C 1.53000 * 109.46934 * 180.02562 * 10 9 8 12 12 C 1.52997 * 109.47040 * 299.99648 * 11 10 9 13 13 C 1.50707 * 109.46825 * 180.02562 * 12 11 10 14 14 H 1.07995 * 120.00167 * 0.02562 * 13 12 11 15 15 C 1.37875 * 119.99853 * 180.02562 * 13 12 11 16 16 N 1.31509 * 120.00123 * 179.72132 * 15 13 12 17 17 Si 1.86806 * 119.99967 * 359.97438 * 15 13 12 18 18 H 1.48502 * 109.46906 * 90.00251 * 17 15 13 19 19 H 1.48506 * 109.46816 * 210.00181 * 17 15 13 20 20 H 1.48496 * 109.47003 * 330.00236 * 17 15 13 21 21 C 1.52999 * 109.46965 * 60.00720 * 12 11 10 22 22 C 1.52996 * 109.47392 * 275.00183 * 9 8 7 23 23 C 1.46656 * 119.99952 * 0.02562 * 6 4 3 24 24 O 1.21604 * 119.99972 * 186.35417 * 23 6 4 25 25 O 1.34842 * 119.99971 * 6.35583 * 23 6 4 26 26 C 1.45201 * 116.99970 * 179.97438 * 25 23 6 27 27 C 1.52996 * 109.47307 * 179.97438 * 26 25 23 28 28 H 1.08995 * 109.47181 * 299.99892 * 1 2 3 29 29 H 1.08998 * 109.46963 * 60.00477 * 1 2 3 30 30 H 1.09004 * 109.47003 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47181 * 240.00108 * 2 1 3 32 32 H 1.09003 * 109.46955 * 120.00031 * 2 1 3 33 33 H 1.08000 * 120.00399 * 7.77564 * 7 6 4 34 34 H 0.96994 * 119.99996 * 355.83089 * 8 7 6 35 35 H 1.08999 * 109.47536 * 35.00286 * 9 8 7 36 36 H 1.08993 * 109.47045 * 59.99994 * 10 9 8 37 37 H 1.08999 * 109.47060 * 300.00320 * 10 9 8 38 38 H 1.09003 * 109.46873 * 179.97438 * 11 10 9 39 39 H 1.08993 * 109.47359 * 60.00065 * 11 10 9 40 40 H 1.08993 * 109.47384 * 300.00401 * 12 11 10 41 41 H 0.97003 * 120.00418 * 179.97438 * 16 15 13 42 42 H 1.08993 * 109.47330 * 59.99647 * 21 12 11 43 43 H 1.09001 * 109.47295 * 179.97438 * 21 12 11 44 44 H 1.09010 * 109.47179 * 300.00120 * 22 9 8 45 45 H 1.08994 * 109.47484 * 59.99473 * 22 9 8 46 46 H 1.08997 * 109.47575 * 300.00131 * 26 25 23 47 47 H 1.09003 * 109.46986 * 60.00287 * 26 25 23 48 48 H 1.09005 * 109.46975 * 300.00196 * 27 26 25 49 49 H 1.08995 * 109.47159 * 60.00069 * 27 26 25 50 50 H 1.08994 * 109.47399 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3507 1.5456 0.0005 5 8 4.0915 0.5814 0.0005 6 6 3.9112 2.9009 0.0000 7 6 5.2808 3.0820 0.0011 8 7 5.7975 4.3175 0.1585 9 6 7.2482 4.4984 0.2513 10 6 7.6149 5.9157 -0.1935 11 6 9.1302 6.1044 -0.0971 12 6 9.5796 5.8917 1.3498 13 6 11.0721 6.0782 1.4448 14 1 11.6428 6.3243 0.5616 15 6 11.7088 5.9346 2.6592 16 7 13.0119 6.0920 2.7411 17 14 10.7215 5.5097 4.1870 18 1 10.6463 4.0338 4.3331 19 1 11.3834 6.0923 5.3820 20 1 9.3502 6.0652 4.0605 21 6 9.2130 4.4744 1.7945 22 6 7.6972 4.2858 1.6984 23 6 3.0178 4.0640 -0.0005 24 8 3.4775 5.1837 -0.1175 25 8 1.6867 3.8917 0.1287 26 6 0.8634 5.0876 0.1203 27 6 -0.6073 4.6955 0.2762 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 5.9378 2.2340 -0.1242 34 1 5.2085 5.0864 0.2103 35 1 7.7467 3.7749 -0.3938 36 1 7.1166 6.6393 0.4516 37 1 7.2951 6.0672 -1.2244 38 1 9.3915 7.1140 -0.4144 39 1 9.6282 5.3809 -0.7424 40 1 9.0816 6.6152 1.9951 41 1 13.4599 5.9914 3.5956 42 1 9.7111 3.7508 1.1492 43 1 9.5336 4.3226 2.8252 44 1 7.1988 5.0094 2.3435 45 1 7.4360 3.2762 2.0153 46 1 1.1562 5.7363 0.9459 47 1 1.0000 5.6162 -0.8231 48 1 -0.8999 4.0471 -0.5498 49 1 -0.7443 4.1667 1.2194 50 1 -1.2254 5.5932 0.2694 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173327938.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:01 Heat of formation + Delta-G solvation = -193.385338 kcal Electronic energy + Delta-G solvation = -30178.690208 eV Core-core repulsion = 25976.934948 eV Total energy + Delta-G solvation = -4201.755260 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.74346 -40.79066 -40.29829 -38.27186 -37.34008 -36.85598 -34.69791 -33.30239 -32.31438 -32.26711 -31.75531 -30.33416 -26.71596 -25.16562 -24.65332 -23.84491 -23.30561 -22.91117 -22.48277 -21.48082 -20.46978 -19.43199 -18.78508 -18.21160 -17.83353 -17.56094 -17.18750 -17.11501 -16.87380 -16.32780 -15.56292 -15.28889 -15.15876 -15.09230 -14.95310 -14.73821 -14.66376 -14.46913 -14.00946 -13.95413 -13.56372 -13.51857 -13.46596 -13.22080 -12.94271 -12.82216 -12.75147 -12.62915 -12.47312 -12.31199 -12.22747 -12.06034 -11.85722 -11.70457 -11.68766 -11.42384 -11.34437 -11.27675 -11.16443 -10.92914 -10.86505 -10.57395 -9.21140 -8.28733 -6.31652 0.06535 1.18942 1.29593 1.35843 1.45187 1.64600 1.90680 2.28049 2.32231 2.39342 3.07230 3.62191 3.69464 3.74494 3.93735 4.08252 4.09459 4.12341 4.16482 4.20658 4.29517 4.31816 4.36477 4.41995 4.44664 4.46806 4.57155 4.60406 4.65144 4.71191 4.89260 4.97623 4.98627 5.01185 5.01968 5.06265 5.10899 5.19155 5.24851 5.29485 5.30427 5.48307 5.58358 5.62441 5.70633 5.80182 5.82222 6.31572 6.34456 6.77342 6.82152 7.00012 7.34084 8.88137 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.016868 B = 0.002469 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.569184 B =11335.776740 C =12016.442011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.054 3.946 3 O -0.347 6.347 4 C 0.537 3.463 5 O -0.565 6.565 6 C -0.408 4.408 7 C 0.347 3.653 8 N -0.645 5.645 9 C 0.130 3.870 10 C -0.117 4.117 11 C -0.090 4.090 12 C 0.008 3.992 13 C -0.515 4.515 14 H 0.035 0.965 15 C 0.009 3.991 16 N -0.952 5.952 17 Si 0.948 3.052 18 H -0.266 1.266 19 H -0.306 1.306 20 H -0.246 1.246 21 C -0.117 4.117 22 C -0.128 4.128 23 C 0.529 3.471 24 O -0.566 6.566 25 O -0.341 6.341 26 C 0.053 3.947 27 C -0.142 4.142 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.097 0.903 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.196 0.804 34 H 0.420 0.580 35 H 0.117 0.883 36 H 0.066 0.934 37 H 0.085 0.915 38 H 0.054 0.946 39 H 0.061 0.939 40 H 0.020 0.980 41 H 0.263 0.737 42 H 0.068 0.932 43 H 0.035 0.965 44 H 0.061 0.939 45 H 0.080 0.920 46 H 0.064 0.936 47 H 0.066 0.934 48 H 0.067 0.933 49 H 0.065 0.935 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.348 -8.733 -6.324 31.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.019 4.019 3 O -0.263 6.263 4 C 0.387 3.613 5 O -0.460 6.460 6 C -0.421 4.421 7 C 0.195 3.805 8 N -0.266 5.266 9 C 0.026 3.974 10 C -0.155 4.155 11 C -0.128 4.128 12 C -0.011 4.011 13 C -0.553 4.553 14 H 0.053 0.947 15 C -0.188 4.188 16 N -0.593 5.593 17 Si 0.775 3.225 18 H -0.192 1.192 19 H -0.234 1.234 20 H -0.170 1.170 21 C -0.155 4.155 22 C -0.167 4.167 23 C 0.382 3.618 24 O -0.463 6.463 25 O -0.256 6.256 26 C -0.020 4.020 27 C -0.199 4.199 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.116 0.884 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.213 0.787 34 H 0.270 0.730 35 H 0.134 0.866 36 H 0.085 0.915 37 H 0.104 0.896 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.038 0.962 41 H 0.072 0.928 42 H 0.086 0.914 43 H 0.053 0.947 44 H 0.080 0.920 45 H 0.099 0.901 46 H 0.082 0.918 47 H 0.084 0.916 48 H 0.086 0.914 49 H 0.084 0.916 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -28.766 -8.559 -6.235 30.653 hybrid contribution 0.395 0.333 0.941 1.074 sum -28.370 -8.226 -5.294 30.010 Atomic orbital electron populations 1.21767 0.90724 1.03960 1.03454 1.23201 0.96858 0.79722 1.02161 1.86704 1.22889 1.32523 1.84160 1.20159 0.80866 0.88576 0.71672 1.90815 1.60869 1.42971 1.51305 1.18757 0.91234 0.88745 1.43316 1.22444 0.92539 0.89820 0.75647 1.46055 1.09926 1.09157 1.61422 1.21654 0.77718 1.00222 0.97785 1.21754 0.96703 0.94609 1.02418 1.21281 0.93531 1.01326 0.96649 1.19188 0.93523 0.93250 0.95112 1.21442 0.93003 1.46289 0.94545 0.94690 1.25892 0.95506 0.95062 1.02309 1.70053 1.10316 1.52454 1.26476 0.85860 0.79707 0.78693 0.78195 1.19187 1.23428 1.17039 1.21835 0.94317 0.99429 0.99894 1.22033 0.96065 1.02629 0.95943 1.20678 0.81890 0.87821 0.71399 1.90446 1.76033 1.27157 1.52621 1.86739 1.17696 1.38117 1.83090 1.23222 0.91401 0.85276 1.02150 1.21766 0.91227 1.03542 1.03395 0.91588 0.91515 0.88394 0.91595 0.91778 0.78702 0.72989 0.86554 0.91523 0.89646 0.92688 0.91994 0.96174 0.92763 0.91371 0.94719 0.92045 0.90130 0.91757 0.91575 0.91371 0.91591 0.88435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 10.29 71.98 0.74 -0.89 16 2 C 0.05 0.98 6.20 71.98 0.45 1.42 16 3 O -0.35 -8.31 8.33 -50.73 -0.42 -8.74 16 4 C 0.54 14.17 7.87 70.02 0.55 14.72 16 5 O -0.56 -16.62 16.10 19.52 0.31 -16.31 16 6 C -0.41 -10.00 6.01 -18.90 -0.11 -10.12 16 7 C 0.35 7.15 9.96 84.21 0.84 7.99 16 8 N -0.64 -13.69 4.93 -325.21 -1.60 -15.30 16 9 C 0.13 2.90 2.76 44.99 0.12 3.02 16 10 C -0.12 -2.92 5.39 30.60 0.16 -2.75 16 11 C -0.09 -2.99 5.14 30.59 0.16 -2.83 16 12 C 0.01 0.34 1.69 -11.54 -0.02 0.32 16 13 C -0.51 -27.92 9.14 25.60 0.23 -27.68 16 14 H 0.03 2.10 7.99 -2.91 -0.02 2.08 16 15 C 0.01 0.50 5.45 84.65 0.46 0.96 16 16 N -0.95 -58.84 13.96 21.45 0.30 -58.54 16 17 Si 0.95 44.00 24.37 68.60 1.67 45.67 16 18 H -0.27 -11.69 6.87 99.48 0.68 -11.00 16 19 H -0.31 -14.50 7.11 99.48 0.71 -13.79 16 20 H -0.25 -10.53 6.53 99.48 0.65 -9.88 16 21 C -0.12 -4.23 4.69 30.61 0.14 -4.09 16 22 C -0.13 -3.47 5.50 30.61 0.17 -3.30 16 23 C 0.53 13.78 7.83 70.02 0.55 14.33 16 24 O -0.57 -15.81 13.43 19.50 0.26 -15.55 16 25 O -0.34 -8.14 8.34 -50.75 -0.42 -8.57 16 26 C 0.05 0.96 6.20 71.98 0.45 1.41 16 27 C -0.14 -1.67 10.29 71.98 0.74 -0.93 16 28 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.10 0.69 8.14 -2.38 -0.02 0.67 16 31 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.20 3.18 7.61 -2.91 -0.02 3.16 16 34 H 0.42 10.01 5.03 -100.01 -0.50 9.51 16 35 H 0.12 2.20 8.07 -2.39 -0.02 2.18 16 36 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.05 1.90 8.14 -2.39 -0.02 1.89 16 39 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.02 0.87 7.20 -2.39 -0.02 0.86 16 41 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 42 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 43 H 0.03 1.39 3.27 -2.39 -0.01 1.38 16 44 H 0.06 1.72 8.14 -2.38 -0.02 1.71 16 45 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 46 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 47 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 48 H 0.07 0.78 8.14 -2.38 -0.02 0.77 16 49 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 50 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -70.47 400.26 6.08 -64.39 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: 0.35 Total: 21.35 kcal Atomic # 6 Polarization: -14.06 SS G_CDS: 5.63 Total: -8.43 kcal Atomic # 7 Polarization: -72.53 SS G_CDS: -1.31 Total: -73.83 kcal Atomic # 8 Polarization: -48.89 SS G_CDS: -0.27 Total: -49.16 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 1.67 Total: 45.67 kcal Total: -70.47 6.08 -64.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173327938.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.991 kcal (2) G-P(sol) polarization free energy of solvation -70.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds