Wall clock time and date at job start Tue Mar 31 2020 23:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34225 * 117.00127 * 2 1 4 4 O 1.20830 * 119.99998 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00102 * 179.97438 * 3 2 1 6 6 H 1.08997 * 110.01284 * 332.20666 * 5 3 2 7 7 C 1.54270 * 110.03031 * 210.81557 * 5 3 2 8 8 C 1.54884 * 104.20017 * 264.32369 * 7 5 3 9 9 H 1.09000 * 110.75255 * 80.55615 * 8 7 5 10 10 N 1.46892 * 110.75858 * 203.74517 * 8 7 5 11 11 C 1.46849 * 111.00160 * 180.02562 * 10 8 7 12 12 C 1.53037 * 109.52450 * 185.84048 * 11 10 8 13 13 C 1.53121 * 109.27821 * 300.81693 * 12 11 10 14 14 C 1.50701 * 109.52379 * 177.56097 * 13 12 11 15 15 H 1.08003 * 119.99723 * 335.21817 * 14 13 12 16 16 C 1.37873 * 120.00100 * 155.22015 * 14 13 12 17 17 N 1.31519 * 119.99956 * 356.48973 * 16 14 13 18 18 Si 1.86799 * 120.00116 * 176.48924 * 16 14 13 19 19 H 1.48503 * 109.47087 * 59.99414 * 18 16 14 20 20 H 1.48505 * 109.46783 * 299.99981 * 18 16 14 21 21 H 1.48490 * 109.47273 * 180.02562 * 18 16 14 22 22 C 1.53121 * 109.20773 * 57.62550 * 13 12 11 23 23 C 1.46847 * 111.00434 * 304.20930 * 10 8 7 24 24 C 1.54897 * 102.74694 * 322.06032 * 8 7 5 25 25 C 1.53874 * 110.03442 * 93.65315 * 5 3 2 26 26 H 1.08993 * 110.03126 * 238.56977 * 25 5 3 27 27 C 1.50702 * 110.03225 * 359.97438 * 25 5 3 28 28 O 1.20826 * 119.99924 * 88.18197 * 27 25 5 29 29 O 1.34232 * 119.99972 * 268.18547 * 27 25 5 30 30 C 1.45202 * 116.99730 * 179.97438 * 29 27 25 31 31 H 1.08998 * 109.47411 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47237 * 300.00480 * 1 2 3 33 33 H 1.09008 * 109.47098 * 60.00216 * 1 2 3 34 34 H 1.09007 * 110.48407 * 145.64206 * 7 5 3 35 35 H 1.09001 * 110.49026 * 23.00683 * 7 5 3 36 36 H 1.08995 * 109.46593 * 65.82161 * 11 10 8 37 37 H 1.09001 * 109.45222 * 305.85023 * 11 10 8 38 38 H 1.09001 * 109.50316 * 180.87869 * 12 11 10 39 39 H 1.09002 * 109.50493 * 60.76078 * 12 11 10 40 40 H 1.08992 * 109.52704 * 297.68983 * 13 12 11 41 41 H 0.96992 * 119.99617 * 5.36510 * 17 16 14 42 42 H 1.08999 * 109.50590 * 62.32196 * 22 13 12 43 43 H 1.09009 * 109.50093 * 182.43806 * 22 13 12 44 44 H 1.09005 * 109.45926 * 294.18137 * 23 10 8 45 45 H 1.09007 * 109.45697 * 54.14938 * 23 10 8 46 46 H 1.08996 * 110.48528 * 156.61717 * 24 8 7 47 47 H 1.08995 * 110.48387 * 279.26088 * 24 8 7 48 48 H 1.08993 * 109.47319 * 300.00159 * 30 29 27 49 49 H 1.08999 * 109.47105 * 60.00201 * 30 29 27 50 50 H 1.09001 * 109.46748 * 180.02562 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9860 0.3897 0.4785 7 6 4.0286 2.5457 0.7430 8 6 4.2445 3.5864 -0.3835 9 1 3.2957 4.0279 -0.6885 10 7 5.1876 4.6283 0.0440 11 6 5.3959 5.6185 -1.0202 12 6 6.4888 6.6024 -0.5966 13 6 6.0665 7.2998 0.6995 14 6 7.1650 8.2261 1.1540 15 1 8.1858 8.0414 0.8535 16 6 6.8667 9.3091 1.9533 17 7 5.6161 9.5737 2.2624 18 14 8.2390 10.4007 2.5973 19 1 8.9794 10.9918 1.4537 20 1 9.1695 9.5903 3.4236 21 1 7.6592 11.4872 3.4270 22 6 5.8081 6.2443 1.7783 23 6 4.7357 5.2703 1.2849 24 6 4.8499 2.7331 -1.5258 25 6 4.0885 1.3941 -1.4419 26 1 4.7623 0.5669 -1.6646 27 6 2.9339 1.3946 -2.4105 28 8 2.3948 2.4344 -2.7072 29 8 2.5045 0.2399 -2.9435 30 6 1.3877 0.3160 -3.8684 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3634 0.5138 -0.8901 34 1 4.9620 2.3590 1.2740 35 1 3.2571 2.8858 1.4339 36 1 4.4676 6.1613 -1.1980 37 1 5.6999 5.1098 -1.9350 38 1 6.6322 7.3465 -1.3801 39 1 7.4211 6.0621 -0.4321 40 1 5.1559 7.8727 0.5249 41 1 4.9109 8.9645 1.9937 42 1 6.7294 5.6983 1.9813 43 1 5.4654 6.7328 2.6906 44 1 3.8105 5.8148 1.0960 45 1 4.5601 4.5087 2.0447 46 1 4.6777 3.2101 -2.4906 47 1 5.9159 2.5768 -1.3612 48 1 0.5234 0.7432 -3.3600 49 1 1.6594 0.9463 -4.7151 50 1 1.1418 -0.6846 -4.2239 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173580582.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:30:47 Heat of formation + Delta-G solvation = -177.473230 kcal Electronic energy + Delta-G solvation = -31607.261974 eV Core-core repulsion = 27406.196715 eV Total energy + Delta-G solvation = -4201.065259 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.70399 -40.22605 -39.02284 -37.37536 -36.62351 -36.15688 -33.76629 -31.31650 -30.48069 -29.56320 -28.97116 -27.82300 -27.24127 -24.81203 -23.60533 -22.47136 -21.89279 -21.68073 -20.02370 -19.73574 -18.97260 -18.49745 -17.53748 -17.40191 -16.94230 -16.78512 -16.14582 -15.97064 -15.91483 -15.04385 -14.16919 -14.12171 -13.79243 -13.77942 -13.66899 -13.50828 -13.30934 -13.22849 -12.97723 -12.62462 -12.47732 -12.40875 -12.15673 -12.02699 -11.68302 -11.61012 -11.32518 -11.15878 -11.11063 -11.05282 -10.96490 -10.83891 -10.68496 -10.59041 -10.41429 -10.28023 -10.25188 -10.04668 -9.46616 -9.05842 -8.34577 -8.22063 -7.83267 -6.26172 -3.96469 1.77071 1.91463 2.21078 2.53184 3.47930 3.49536 3.68318 3.89774 4.10963 4.29536 4.37755 4.58209 4.59604 4.74984 4.79246 4.82680 4.87312 4.90702 4.97659 5.05060 5.17099 5.17814 5.23546 5.34114 5.43681 5.47726 5.70547 5.76501 5.79820 5.84073 5.95034 5.99987 6.05431 6.08710 6.11300 6.28231 6.31397 6.41259 6.59996 6.65425 6.95508 7.01587 7.16445 7.43030 7.46278 7.48490 7.59159 7.71005 7.80764 8.35460 8.53553 8.97751 9.75583 11.12203 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.023797 B = 0.002606 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.317674 B =10740.839053 C =11267.089334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.354 6.354 3 C 0.448 3.552 4 O -0.480 6.480 5 C -0.070 4.070 6 H 0.122 0.878 7 C -0.103 4.103 8 C 0.080 3.920 9 H 0.060 0.940 10 N -0.524 5.524 11 C 0.057 3.943 12 C -0.098 4.098 13 C 0.029 3.971 14 C -0.589 4.589 15 H 0.047 0.953 16 C 0.017 3.983 17 N -0.916 5.916 18 Si 1.065 2.935 19 H -0.289 1.289 20 H -0.288 1.288 21 H -0.284 1.284 22 C -0.102 4.102 23 C 0.055 3.945 24 C -0.100 4.100 25 C -0.070 4.070 26 H 0.122 0.878 27 C 0.448 3.552 28 O -0.480 6.480 29 O -0.354 6.354 30 C 0.035 3.965 31 H 0.102 0.898 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.099 0.901 35 H 0.079 0.921 36 H 0.024 0.976 37 H 0.060 0.940 38 H 0.052 0.948 39 H 0.056 0.944 40 H 0.025 0.975 41 H 0.269 0.731 42 H 0.054 0.946 43 H 0.054 0.946 44 H 0.023 0.977 45 H 0.060 0.940 46 H 0.078 0.922 47 H 0.099 0.901 48 H 0.059 0.941 49 H 0.064 0.936 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.683 -25.056 -8.212 27.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.271 6.271 3 C 0.289 3.711 4 O -0.365 6.365 5 C -0.090 4.090 6 H 0.140 0.860 7 C -0.141 4.141 8 C -0.029 4.029 9 H 0.078 0.922 10 N -0.249 5.249 11 C -0.070 4.070 12 C -0.136 4.136 13 C 0.010 3.990 14 C -0.627 4.627 15 H 0.065 0.935 16 C -0.186 4.186 17 N -0.553 5.553 18 Si 0.894 3.106 19 H -0.216 1.216 20 H -0.215 1.215 21 H -0.210 1.210 22 C -0.140 4.140 23 C -0.073 4.073 24 C -0.138 4.138 25 C -0.090 4.090 26 H 0.140 0.860 27 C 0.289 3.711 28 O -0.365 6.365 29 O -0.271 6.271 30 C -0.059 4.059 31 H 0.121 0.879 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.117 0.883 35 H 0.097 0.903 36 H 0.043 0.957 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.043 0.957 41 H 0.081 0.919 42 H 0.073 0.927 43 H 0.072 0.928 44 H 0.042 0.958 45 H 0.078 0.922 46 H 0.097 0.903 47 H 0.117 0.883 48 H 0.077 0.923 49 H 0.082 0.918 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -7.381 -23.255 -7.365 25.485 hybrid contribution -1.656 -1.011 -1.219 2.291 sum -9.038 -24.266 -8.583 27.280 Atomic orbital electron populations 1.23263 0.76453 1.03636 1.02513 1.86534 1.23307 1.33163 1.84061 1.23756 0.92103 0.81772 0.73490 1.90749 1.66677 1.36081 1.42999 1.21656 0.87591 1.03566 0.96180 0.85990 1.22484 1.02566 0.91232 0.97786 1.22579 0.94760 0.92318 0.93228 0.92166 1.62069 1.44825 1.13283 1.04690 1.22174 0.98729 0.93035 0.93082 1.21583 0.96774 0.95928 0.99298 1.18887 0.97160 0.92640 0.90326 1.21952 0.94270 1.12607 1.33865 0.93457 1.25785 1.00677 0.97421 0.94730 1.70787 0.99815 1.38367 1.46305 0.83599 0.74543 0.76043 0.76394 1.21586 1.21500 1.20951 1.21767 0.96341 0.95938 0.99993 1.22248 0.97636 0.96679 0.90700 1.22436 1.00121 0.91079 1.00184 1.21659 0.93704 1.03358 0.90255 0.85991 1.23757 0.84717 0.82011 0.80638 1.90740 1.55394 1.32894 1.57446 1.86538 1.48691 1.35115 1.56772 1.23261 0.87125 1.03673 0.91807 0.87948 0.91756 0.92280 0.88258 0.90273 0.95726 0.92147 0.92942 0.92552 0.95668 0.91926 0.92720 0.92760 0.95827 0.92154 0.90333 0.88276 0.92264 0.91770 0.87954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.56 101.05 1.07 1.35 16 2 O -0.35 -3.74 10.56 -39.24 -0.41 -4.15 16 3 C 0.45 5.58 4.97 36.01 0.18 5.76 16 4 O -0.48 -7.65 15.25 -21.39 -0.33 -7.97 16 5 C -0.07 -0.71 3.40 -90.65 -0.31 -1.02 16 6 H 0.12 0.84 8.14 -51.93 -0.42 0.41 16 7 C -0.10 -1.25 4.16 -25.07 -0.10 -1.35 16 8 C 0.08 1.18 2.50 -65.72 -0.16 1.01 16 9 H 0.06 1.08 8.11 -51.93 -0.42 0.66 16 10 N -0.52 -9.01 4.55 -224.31 -1.02 -10.03 16 11 C 0.06 1.06 5.35 -3.83 -0.02 1.04 16 12 C -0.10 -2.10 5.36 -26.65 -0.14 -2.24 16 13 C 0.03 0.72 1.86 -91.65 -0.17 0.55 16 14 C -0.59 -16.56 8.32 -34.44 -0.29 -16.84 16 15 H 0.05 1.33 7.81 -52.48 -0.41 0.92 16 16 C 0.02 0.50 5.46 -17.82 -0.10 0.41 16 17 N -0.92 -27.98 13.62 55.43 0.75 -27.22 16 18 Si 1.07 25.48 29.90 -169.99 -5.08 20.39 16 19 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 20 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 22 C -0.10 -2.31 5.37 -26.65 -0.14 -2.45 16 23 C 0.05 1.05 5.25 -3.83 -0.02 1.03 16 24 C -0.10 -1.19 4.69 -25.07 -0.12 -1.31 16 25 C -0.07 -0.70 3.40 -90.65 -0.31 -1.01 16 26 H 0.12 0.82 8.14 -51.93 -0.42 0.40 16 27 C 0.45 5.51 4.96 36.01 0.18 5.69 16 28 O -0.48 -7.54 15.26 -21.39 -0.33 -7.87 16 29 O -0.35 -3.70 10.57 -39.26 -0.41 -4.12 16 30 C 0.04 0.28 10.56 101.05 1.07 1.35 16 31 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.53 8.13 -51.93 -0.42 0.10 16 33 H 0.06 0.51 8.13 -51.92 -0.42 0.09 16 34 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.08 1.06 7.18 -51.93 -0.37 0.69 16 36 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.98 7.00 -51.93 -0.36 0.62 16 38 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.03 0.70 6.72 -51.93 -0.35 0.35 16 41 H 0.27 8.22 6.68 -40.82 -0.27 7.94 16 42 H 0.05 1.24 8.14 -51.93 -0.42 0.81 16 43 H 0.05 1.33 8.14 -51.92 -0.42 0.91 16 44 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.06 1.02 6.63 -51.92 -0.34 0.68 16 46 H 0.08 1.01 7.13 -51.93 -0.37 0.64 16 47 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 48 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 49 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 50 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 394.70 15.07 5.95 5.95 Total: -1.00 -34.76 394.70 -8.74 -43.50 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -8.46 Total: -0.41 kcal Atomic # 6 Polarization: -8.66 SS G_CDS: 0.61 Total: -8.06 kcal Atomic # 7 Polarization: -36.99 SS G_CDS: -0.27 Total: -37.25 kcal Atomic # 8 Polarization: -22.63 SS G_CDS: -1.48 Total: -24.12 kcal Atomic # 14 Polarization: 25.48 SS G_CDS: -5.08 Total: 20.39 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.76 -8.74 -43.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173580582.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.978 kcal (2) G-P(sol) polarization free energy of solvation -34.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds