Wall clock time and date at job start Tue Mar 31 2020 23:30:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45198 * 1
3 3 C 1.34225 * 117.00127 * 2 1
4 4 O 1.20830 * 119.99998 * 359.97438 * 3 2 1
5 5 C 1.50699 * 120.00102 * 179.97438 * 3 2 1
6 6 H 1.08997 * 110.01284 * 332.20666 * 5 3 2
7 7 C 1.54270 * 110.03031 * 210.81557 * 5 3 2
8 8 C 1.54884 * 104.20017 * 264.32369 * 7 5 3
9 9 H 1.09000 * 110.75255 * 80.55615 * 8 7 5
10 10 N 1.46892 * 110.75858 * 203.74517 * 8 7 5
11 11 C 1.46849 * 111.00160 * 180.02562 * 10 8 7
12 12 C 1.53037 * 109.52450 * 185.84048 * 11 10 8
13 13 C 1.53121 * 109.27821 * 300.81693 * 12 11 10
14 14 C 1.50701 * 109.52379 * 177.56097 * 13 12 11
15 15 H 1.08003 * 119.99723 * 335.21817 * 14 13 12
16 16 C 1.37873 * 120.00100 * 155.22015 * 14 13 12
17 17 N 1.31519 * 119.99956 * 356.48973 * 16 14 13
18 18 Si 1.86799 * 120.00116 * 176.48924 * 16 14 13
19 19 H 1.48503 * 109.47087 * 59.99414 * 18 16 14
20 20 H 1.48505 * 109.46783 * 299.99981 * 18 16 14
21 21 H 1.48490 * 109.47273 * 180.02562 * 18 16 14
22 22 C 1.53121 * 109.20773 * 57.62550 * 13 12 11
23 23 C 1.46847 * 111.00434 * 304.20930 * 10 8 7
24 24 C 1.54897 * 102.74694 * 322.06032 * 8 7 5
25 25 C 1.53874 * 110.03442 * 93.65315 * 5 3 2
26 26 H 1.08993 * 110.03126 * 238.56977 * 25 5 3
27 27 C 1.50702 * 110.03225 * 359.97438 * 25 5 3
28 28 O 1.20826 * 119.99924 * 88.18197 * 27 25 5
29 29 O 1.34232 * 119.99972 * 268.18547 * 27 25 5
30 30 C 1.45202 * 116.99730 * 179.97438 * 29 27 25
31 31 H 1.08998 * 109.47411 * 179.97438 * 1 2 3
32 32 H 1.09000 * 109.47237 * 300.00480 * 1 2 3
33 33 H 1.09008 * 109.47098 * 60.00216 * 1 2 3
34 34 H 1.09007 * 110.48407 * 145.64206 * 7 5 3
35 35 H 1.09001 * 110.49026 * 23.00683 * 7 5 3
36 36 H 1.08995 * 109.46593 * 65.82161 * 11 10 8
37 37 H 1.09001 * 109.45222 * 305.85023 * 11 10 8
38 38 H 1.09001 * 109.50316 * 180.87869 * 12 11 10
39 39 H 1.09002 * 109.50493 * 60.76078 * 12 11 10
40 40 H 1.08992 * 109.52704 * 297.68983 * 13 12 11
41 41 H 0.96992 * 119.99617 * 5.36510 * 17 16 14
42 42 H 1.08999 * 109.50590 * 62.32196 * 22 13 12
43 43 H 1.09009 * 109.50093 * 182.43806 * 22 13 12
44 44 H 1.09005 * 109.45926 * 294.18137 * 23 10 8
45 45 H 1.09007 * 109.45697 * 54.14938 * 23 10 8
46 46 H 1.08996 * 110.48528 * 156.61717 * 24 8 7
47 47 H 1.08995 * 110.48387 * 279.26088 * 24 8 7
48 48 H 1.08993 * 109.47319 * 300.00159 * 30 29 27
49 49 H 1.08999 * 109.47105 * 60.00201 * 30 29 27
50 50 H 1.09001 * 109.46748 * 180.02562 * 30 29 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0614 1.1959 0.0000
4 8 1.4033 2.2093 -0.0005
5 6 3.5663 1.2748 0.0006
6 1 3.9860 0.3897 0.4785
7 6 4.0286 2.5457 0.7430
8 6 4.2445 3.5864 -0.3835
9 1 3.2957 4.0279 -0.6885
10 7 5.1876 4.6283 0.0440
11 6 5.3959 5.6185 -1.0202
12 6 6.4888 6.6024 -0.5966
13 6 6.0665 7.2998 0.6995
14 6 7.1650 8.2261 1.1540
15 1 8.1858 8.0414 0.8535
16 6 6.8667 9.3091 1.9533
17 7 5.6161 9.5737 2.2624
18 14 8.2390 10.4007 2.5973
19 1 8.9794 10.9918 1.4537
20 1 9.1695 9.5903 3.4236
21 1 7.6592 11.4872 3.4270
22 6 5.8081 6.2443 1.7783
23 6 4.7357 5.2703 1.2849
24 6 4.8499 2.7331 -1.5258
25 6 4.0885 1.3941 -1.4419
26 1 4.7623 0.5669 -1.6646
27 6 2.9339 1.3946 -2.4105
28 8 2.3948 2.4344 -2.7072
29 8 2.5045 0.2399 -2.9435
30 6 1.3877 0.3160 -3.8684
31 1 -0.3634 -1.0276 -0.0005
32 1 -0.3634 0.5139 0.8899
33 1 -0.3634 0.5138 -0.8901
34 1 4.9620 2.3590 1.2740
35 1 3.2571 2.8858 1.4339
36 1 4.4676 6.1613 -1.1980
37 1 5.6999 5.1098 -1.9350
38 1 6.6322 7.3465 -1.3801
39 1 7.4211 6.0621 -0.4321
40 1 5.1559 7.8727 0.5249
41 1 4.9109 8.9645 1.9937
42 1 6.7294 5.6983 1.9813
43 1 5.4654 6.7328 2.6906
44 1 3.8105 5.8148 1.0960
45 1 4.5601 4.5087 2.0447
46 1 4.6777 3.2101 -2.4906
47 1 5.9159 2.5768 -1.3612
48 1 0.5234 0.7432 -3.3600
49 1 1.6594 0.9463 -4.7151
50 1 1.1418 -0.6846 -4.2239
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001173580582.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 23:30:47
Heat of formation + Delta-G solvation = -177.473230 kcal
Electronic energy + Delta-G solvation = -31607.261974 eV
Core-core repulsion = 27406.196715 eV
Total energy + Delta-G solvation = -4201.065259 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 339.192 amu
Computer time = 0.84 seconds
Orbital eigenvalues (eV)
-41.70399 -40.22605 -39.02284 -37.37536 -36.62351 -36.15688 -33.76629 -31.31650
-30.48069 -29.56320 -28.97116 -27.82300 -27.24127 -24.81203 -23.60533 -22.47136
-21.89279 -21.68073 -20.02370 -19.73574 -18.97260 -18.49745 -17.53748 -17.40191
-16.94230 -16.78512 -16.14582 -15.97064 -15.91483 -15.04385 -14.16919 -14.12171
-13.79243 -13.77942 -13.66899 -13.50828 -13.30934 -13.22849 -12.97723 -12.62462
-12.47732 -12.40875 -12.15673 -12.02699 -11.68302 -11.61012 -11.32518 -11.15878
-11.11063 -11.05282 -10.96490 -10.83891 -10.68496 -10.59041 -10.41429 -10.28023
-10.25188 -10.04668 -9.46616 -9.05842 -8.34577 -8.22063 -7.83267 -6.26172
-3.96469 1.77071 1.91463 2.21078 2.53184 3.47930 3.49536 3.68318
3.89774 4.10963 4.29536 4.37755 4.58209 4.59604 4.74984 4.79246
4.82680 4.87312 4.90702 4.97659 5.05060 5.17099 5.17814 5.23546
5.34114 5.43681 5.47726 5.70547 5.76501 5.79820 5.84073 5.95034
5.99987 6.05431 6.08710 6.11300 6.28231 6.31397 6.41259 6.59996
6.65425 6.95508 7.01587 7.16445 7.43030 7.46278 7.48490 7.59159
7.71005 7.80764 8.35460 8.53553 8.97751 9.75583 11.12203
Molecular weight = 339.19amu
Principal moments of inertia in cm(-1)
A = 0.023797 B = 0.002606 C = 0.002485
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1176.317674 B =10740.839053 C =11267.089334
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.035 3.965
2 O -0.354 6.354
3 C 0.448 3.552
4 O -0.480 6.480
5 C -0.070 4.070
6 H 0.122 0.878
7 C -0.103 4.103
8 C 0.080 3.920
9 H 0.060 0.940
10 N -0.524 5.524
11 C 0.057 3.943
12 C -0.098 4.098
13 C 0.029 3.971
14 C -0.589 4.589
15 H 0.047 0.953
16 C 0.017 3.983
17 N -0.916 5.916
18 Si 1.065 2.935
19 H -0.289 1.289
20 H -0.288 1.288
21 H -0.284 1.284
22 C -0.102 4.102
23 C 0.055 3.945
24 C -0.100 4.100
25 C -0.070 4.070
26 H 0.122 0.878
27 C 0.448 3.552
28 O -0.480 6.480
29 O -0.354 6.354
30 C 0.035 3.965
31 H 0.102 0.898
32 H 0.064 0.936
33 H 0.058 0.942
34 H 0.099 0.901
35 H 0.079 0.921
36 H 0.024 0.976
37 H 0.060 0.940
38 H 0.052 0.948
39 H 0.056 0.944
40 H 0.025 0.975
41 H 0.269 0.731
42 H 0.054 0.946
43 H 0.054 0.946
44 H 0.023 0.977
45 H 0.060 0.940
46 H 0.078 0.922
47 H 0.099 0.901
48 H 0.059 0.941
49 H 0.064 0.936
50 H 0.102 0.898
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.683 -25.056 -8.212 27.464
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.059 4.059
2 O -0.271 6.271
3 C 0.289 3.711
4 O -0.365 6.365
5 C -0.090 4.090
6 H 0.140 0.860
7 C -0.141 4.141
8 C -0.029 4.029
9 H 0.078 0.922
10 N -0.249 5.249
11 C -0.070 4.070
12 C -0.136 4.136
13 C 0.010 3.990
14 C -0.627 4.627
15 H 0.065 0.935
16 C -0.186 4.186
17 N -0.553 5.553
18 Si 0.894 3.106
19 H -0.216 1.216
20 H -0.215 1.215
21 H -0.210 1.210
22 C -0.140 4.140
23 C -0.073 4.073
24 C -0.138 4.138
25 C -0.090 4.090
26 H 0.140 0.860
27 C 0.289 3.711
28 O -0.365 6.365
29 O -0.271 6.271
30 C -0.059 4.059
31 H 0.121 0.879
32 H 0.082 0.918
33 H 0.077 0.923
34 H 0.117 0.883
35 H 0.097 0.903
36 H 0.043 0.957
37 H 0.079 0.921
38 H 0.071 0.929
39 H 0.074 0.926
40 H 0.043 0.957
41 H 0.081 0.919
42 H 0.073 0.927
43 H 0.072 0.928
44 H 0.042 0.958
45 H 0.078 0.922
46 H 0.097 0.903
47 H 0.117 0.883
48 H 0.077 0.923
49 H 0.082 0.918
50 H 0.120 0.880
Dipole moment (debyes) X Y Z Total
from point charges -7.381 -23.255 -7.365 25.485
hybrid contribution -1.656 -1.011 -1.219 2.291
sum -9.038 -24.266 -8.583 27.280
Atomic orbital electron populations
1.23263 0.76453 1.03636 1.02513 1.86534 1.23307 1.33163 1.84061
1.23756 0.92103 0.81772 0.73490 1.90749 1.66677 1.36081 1.42999
1.21656 0.87591 1.03566 0.96180 0.85990 1.22484 1.02566 0.91232
0.97786 1.22579 0.94760 0.92318 0.93228 0.92166 1.62069 1.44825
1.13283 1.04690 1.22174 0.98729 0.93035 0.93082 1.21583 0.96774
0.95928 0.99298 1.18887 0.97160 0.92640 0.90326 1.21952 0.94270
1.12607 1.33865 0.93457 1.25785 1.00677 0.97421 0.94730 1.70787
0.99815 1.38367 1.46305 0.83599 0.74543 0.76043 0.76394 1.21586
1.21500 1.20951 1.21767 0.96341 0.95938 0.99993 1.22248 0.97636
0.96679 0.90700 1.22436 1.00121 0.91079 1.00184 1.21659 0.93704
1.03358 0.90255 0.85991 1.23757 0.84717 0.82011 0.80638 1.90740
1.55394 1.32894 1.57446 1.86538 1.48691 1.35115 1.56772 1.23261
0.87125 1.03673 0.91807 0.87948 0.91756 0.92280 0.88258 0.90273
0.95726 0.92147 0.92942 0.92552 0.95668 0.91926 0.92720 0.92760
0.95827 0.92154 0.90333 0.88276 0.92264 0.91770 0.87954
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.28 10.56 101.05 1.07 1.35 16
2 O -0.35 -3.74 10.56 -39.24 -0.41 -4.15 16
3 C 0.45 5.58 4.97 36.01 0.18 5.76 16
4 O -0.48 -7.65 15.25 -21.39 -0.33 -7.97 16
5 C -0.07 -0.71 3.40 -90.65 -0.31 -1.02 16
6 H 0.12 0.84 8.14 -51.93 -0.42 0.41 16
7 C -0.10 -1.25 4.16 -25.07 -0.10 -1.35 16
8 C 0.08 1.18 2.50 -65.72 -0.16 1.01 16
9 H 0.06 1.08 8.11 -51.93 -0.42 0.66 16
10 N -0.52 -9.01 4.55 -224.31 -1.02 -10.03 16
11 C 0.06 1.06 5.35 -3.83 -0.02 1.04 16
12 C -0.10 -2.10 5.36 -26.65 -0.14 -2.24 16
13 C 0.03 0.72 1.86 -91.65 -0.17 0.55 16
14 C -0.59 -16.56 8.32 -34.44 -0.29 -16.84 16
15 H 0.05 1.33 7.81 -52.48 -0.41 0.92 16
16 C 0.02 0.50 5.46 -17.82 -0.10 0.41 16
17 N -0.92 -27.98 13.62 55.43 0.75 -27.22 16
18 Si 1.07 25.48 29.90 -169.99 -5.08 20.39 16
19 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16
20 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16
21 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16
22 C -0.10 -2.31 5.37 -26.65 -0.14 -2.45 16
23 C 0.05 1.05 5.25 -3.83 -0.02 1.03 16
24 C -0.10 -1.19 4.69 -25.07 -0.12 -1.31 16
25 C -0.07 -0.70 3.40 -90.65 -0.31 -1.01 16
26 H 0.12 0.82 8.14 -51.93 -0.42 0.40 16
27 C 0.45 5.51 4.96 36.01 0.18 5.69 16
28 O -0.48 -7.54 15.26 -21.39 -0.33 -7.87 16
29 O -0.35 -3.70 10.57 -39.26 -0.41 -4.12 16
30 C 0.04 0.28 10.56 101.05 1.07 1.35 16
31 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16
32 H 0.06 0.53 8.13 -51.93 -0.42 0.10 16
33 H 0.06 0.51 8.13 -51.92 -0.42 0.09 16
34 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16
35 H 0.08 1.06 7.18 -51.93 -0.37 0.69 16
36 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16
37 H 0.06 0.98 7.00 -51.93 -0.36 0.62 16
38 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16
39 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16
40 H 0.03 0.70 6.72 -51.93 -0.35 0.35 16
41 H 0.27 8.22 6.68 -40.82 -0.27 7.94 16
42 H 0.05 1.24 8.14 -51.93 -0.42 0.81 16
43 H 0.05 1.33 8.14 -51.92 -0.42 0.91 16
44 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16
45 H 0.06 1.02 6.63 -51.92 -0.34 0.68 16
46 H 0.08 1.01 7.13 -51.93 -0.37 0.64 16
47 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16
48 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16
49 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16
50 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16
LS Contribution 394.70 15.07 5.95 5.95
Total: -1.00 -34.76 394.70 -8.74 -43.50
By element:
Atomic # 1 Polarization: 8.05 SS G_CDS: -8.46 Total: -0.41 kcal
Atomic # 6 Polarization: -8.66 SS G_CDS: 0.61 Total: -8.06 kcal
Atomic # 7 Polarization: -36.99 SS G_CDS: -0.27 Total: -37.25 kcal
Atomic # 8 Polarization: -22.63 SS G_CDS: -1.48 Total: -24.12 kcal
Atomic # 14 Polarization: 25.48 SS G_CDS: -5.08 Total: 20.39 kcal
Total LS contribution 5.95 Total: 5.95 kcal
Total: -34.76 -8.74 -43.50 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001173580582.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -133.978 kcal
(2) G-P(sol) polarization free energy of solvation -34.757 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.735 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.739 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.496 kcal
(6) G-S(sol) free energy of system = (1) + (5) -177.473 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.84 seconds