Wall clock time and date at job start Tue Mar 31 2020 23:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34225 * 117.00127 * 2 1 4 4 O 1.20830 * 119.99998 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00102 * 179.97438 * 3 2 1 6 6 H 1.08997 * 110.01284 * 332.20666 * 5 3 2 7 7 C 1.54270 * 110.03031 * 210.81557 * 5 3 2 8 8 C 1.54884 * 104.20017 * 264.32369 * 7 5 3 9 9 H 1.09000 * 110.75255 * 80.55615 * 8 7 5 10 10 N 1.46892 * 110.75858 * 203.74517 * 8 7 5 11 11 C 1.46849 * 111.00160 * 180.02562 * 10 8 7 12 12 C 1.53037 * 109.52450 * 185.84048 * 11 10 8 13 13 C 1.53121 * 109.27821 * 300.81693 * 12 11 10 14 14 C 1.50701 * 109.52379 * 177.56097 * 13 12 11 15 15 H 1.08003 * 119.99723 * 335.21817 * 14 13 12 16 16 C 1.37873 * 120.00100 * 155.22015 * 14 13 12 17 17 N 1.31519 * 119.99956 * 356.48973 * 16 14 13 18 18 Si 1.86799 * 120.00116 * 176.48924 * 16 14 13 19 19 H 1.48503 * 109.47087 * 59.99414 * 18 16 14 20 20 H 1.48505 * 109.46783 * 299.99981 * 18 16 14 21 21 H 1.48490 * 109.47273 * 180.02562 * 18 16 14 22 22 C 1.53121 * 109.20773 * 57.62550 * 13 12 11 23 23 C 1.46847 * 111.00434 * 304.20930 * 10 8 7 24 24 C 1.54897 * 102.74694 * 322.06032 * 8 7 5 25 25 C 1.53874 * 110.03442 * 93.65315 * 5 3 2 26 26 H 1.08993 * 110.03126 * 238.56977 * 25 5 3 27 27 C 1.50702 * 110.03225 * 359.97438 * 25 5 3 28 28 O 1.20826 * 119.99924 * 88.18197 * 27 25 5 29 29 O 1.34232 * 119.99972 * 268.18547 * 27 25 5 30 30 C 1.45202 * 116.99730 * 179.97438 * 29 27 25 31 31 H 1.08998 * 109.47411 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47237 * 300.00480 * 1 2 3 33 33 H 1.09008 * 109.47098 * 60.00216 * 1 2 3 34 34 H 1.09007 * 110.48407 * 145.64206 * 7 5 3 35 35 H 1.09001 * 110.49026 * 23.00683 * 7 5 3 36 36 H 1.08995 * 109.46593 * 65.82161 * 11 10 8 37 37 H 1.09001 * 109.45222 * 305.85023 * 11 10 8 38 38 H 1.09001 * 109.50316 * 180.87869 * 12 11 10 39 39 H 1.09002 * 109.50493 * 60.76078 * 12 11 10 40 40 H 1.08992 * 109.52704 * 297.68983 * 13 12 11 41 41 H 0.96992 * 119.99617 * 5.36510 * 17 16 14 42 42 H 1.08999 * 109.50590 * 62.32196 * 22 13 12 43 43 H 1.09009 * 109.50093 * 182.43806 * 22 13 12 44 44 H 1.09005 * 109.45926 * 294.18137 * 23 10 8 45 45 H 1.09007 * 109.45697 * 54.14938 * 23 10 8 46 46 H 1.08996 * 110.48528 * 156.61717 * 24 8 7 47 47 H 1.08995 * 110.48387 * 279.26088 * 24 8 7 48 48 H 1.08993 * 109.47319 * 300.00159 * 30 29 27 49 49 H 1.08999 * 109.47105 * 60.00201 * 30 29 27 50 50 H 1.09001 * 109.46748 * 180.02562 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9860 0.3897 0.4785 7 6 4.0286 2.5457 0.7430 8 6 4.2445 3.5864 -0.3835 9 1 3.2957 4.0279 -0.6885 10 7 5.1876 4.6283 0.0440 11 6 5.3959 5.6185 -1.0202 12 6 6.4888 6.6024 -0.5966 13 6 6.0665 7.2998 0.6995 14 6 7.1650 8.2261 1.1540 15 1 8.1858 8.0414 0.8535 16 6 6.8667 9.3091 1.9533 17 7 5.6161 9.5737 2.2624 18 14 8.2390 10.4007 2.5973 19 1 8.9794 10.9918 1.4537 20 1 9.1695 9.5903 3.4236 21 1 7.6592 11.4872 3.4270 22 6 5.8081 6.2443 1.7783 23 6 4.7357 5.2703 1.2849 24 6 4.8499 2.7331 -1.5258 25 6 4.0885 1.3941 -1.4419 26 1 4.7623 0.5669 -1.6646 27 6 2.9339 1.3946 -2.4105 28 8 2.3948 2.4344 -2.7072 29 8 2.5045 0.2399 -2.9435 30 6 1.3877 0.3160 -3.8684 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3634 0.5138 -0.8901 34 1 4.9620 2.3590 1.2740 35 1 3.2571 2.8858 1.4339 36 1 4.4676 6.1613 -1.1980 37 1 5.6999 5.1098 -1.9350 38 1 6.6322 7.3465 -1.3801 39 1 7.4211 6.0621 -0.4321 40 1 5.1559 7.8727 0.5249 41 1 4.9109 8.9645 1.9937 42 1 6.7294 5.6983 1.9813 43 1 5.4654 6.7328 2.6906 44 1 3.8105 5.8148 1.0960 45 1 4.5601 4.5087 2.0447 46 1 4.6777 3.2101 -2.4906 47 1 5.9159 2.5768 -1.3612 48 1 0.5234 0.7432 -3.3600 49 1 1.6594 0.9463 -4.7151 50 1 1.1418 -0.6846 -4.2239 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173580582.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:30:46 Heat of formation + Delta-G solvation = -199.279741 kcal Electronic energy + Delta-G solvation = -31608.207575 eV Core-core repulsion = 27406.196715 eV Total energy + Delta-G solvation = -4202.010860 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.62739 -41.12949 -40.33522 -38.56513 -37.54619 -37.27137 -35.56176 -33.07727 -31.93605 -30.67371 -30.10801 -28.56907 -28.22045 -26.67391 -24.66755 -24.07783 -23.38245 -22.85077 -21.18036 -20.71930 -20.60698 -19.45998 -18.86637 -18.43652 -18.30082 -17.80435 -17.24793 -16.98147 -16.80635 -16.12654 -15.66400 -15.61970 -15.54077 -15.06421 -14.74403 -14.68827 -14.64082 -14.38659 -14.24103 -14.11397 -13.32519 -13.30393 -13.21213 -13.16716 -13.02780 -12.91887 -12.82095 -12.61997 -12.22735 -12.21278 -12.07333 -11.97397 -11.96207 -11.94078 -11.90172 -11.82816 -11.69749 -11.36382 -11.29642 -10.96671 -10.45463 -10.34514 -9.36252 -8.57136 -6.27970 0.85561 1.00891 1.42167 1.53417 1.61821 1.76368 1.80537 2.59983 2.76322 3.21216 3.22518 3.23211 3.56432 3.78889 3.97795 4.02227 4.10404 4.12641 4.17886 4.20267 4.21296 4.22583 4.22956 4.32700 4.38181 4.39470 4.44060 4.46916 4.57677 4.62166 4.62930 4.69549 4.77778 4.80525 4.88203 4.96571 5.00582 5.04008 5.14580 5.20317 5.24983 5.26650 5.30266 5.57495 5.74260 6.08050 6.14755 6.18876 6.28335 6.54822 6.60236 6.68514 7.53073 8.80966 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.023797 B = 0.002606 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.317674 B =10740.839053 C =11267.089334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.349 6.349 3 C 0.445 3.555 4 O -0.526 6.526 5 C -0.064 4.064 6 H 0.171 0.829 7 C -0.100 4.100 8 C 0.075 3.925 9 H 0.019 0.981 10 N -0.511 5.511 11 C 0.065 3.935 12 C -0.089 4.089 13 C 0.021 3.979 14 C -0.599 4.599 15 H 0.048 0.952 16 C -0.037 4.037 17 N -0.944 5.944 18 Si 1.113 2.887 19 H -0.272 1.272 20 H -0.268 1.268 21 H -0.288 1.288 22 C -0.090 4.090 23 C 0.065 3.935 24 C -0.094 4.094 25 C -0.065 4.065 26 H 0.172 0.828 27 C 0.445 3.555 28 O -0.525 6.525 29 O -0.350 6.350 30 C 0.029 3.971 31 H 0.140 0.860 32 H 0.059 0.941 33 H 0.048 0.952 34 H 0.123 0.877 35 H 0.060 0.940 36 H 0.000 1.000 37 H 0.091 0.909 38 H 0.045 0.955 39 H 0.064 0.936 40 H -0.015 1.015 41 H 0.254 0.746 42 H 0.060 0.940 43 H 0.025 0.975 44 H -0.003 1.003 45 H 0.089 0.911 46 H 0.064 0.936 47 H 0.124 0.876 48 H 0.046 0.954 49 H 0.060 0.940 50 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.672 -28.809 -8.529 30.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.265 6.265 3 C 0.288 3.712 4 O -0.415 6.415 5 C -0.084 4.084 6 H 0.189 0.811 7 C -0.137 4.137 8 C -0.033 4.033 9 H 0.037 0.963 10 N -0.235 5.235 11 C -0.063 4.063 12 C -0.127 4.127 13 C 0.002 3.998 14 C -0.637 4.637 15 H 0.066 0.934 16 C -0.234 4.234 17 N -0.582 5.582 18 Si 0.935 3.065 19 H -0.197 1.197 20 H -0.193 1.193 21 H -0.214 1.214 22 C -0.128 4.128 23 C -0.063 4.063 24 C -0.132 4.132 25 C -0.084 4.084 26 H 0.190 0.810 27 C 0.288 3.712 28 O -0.413 6.413 29 O -0.266 6.266 30 C -0.065 4.065 31 H 0.158 0.842 32 H 0.077 0.923 33 H 0.066 0.934 34 H 0.141 0.859 35 H 0.078 0.922 36 H 0.019 0.981 37 H 0.110 0.890 38 H 0.064 0.936 39 H 0.083 0.917 40 H 0.004 0.996 41 H 0.064 0.936 42 H 0.079 0.921 43 H 0.044 0.956 44 H 0.015 0.985 45 H 0.107 0.893 46 H 0.082 0.918 47 H 0.142 0.858 48 H 0.065 0.935 49 H 0.079 0.921 50 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -5.367 -27.078 -7.704 28.660 hybrid contribution -2.405 0.107 -1.195 2.688 sum -7.772 -26.971 -8.899 29.445 Atomic orbital electron populations 1.23522 0.75284 1.05868 1.01792 1.86527 1.24480 1.32040 1.83420 1.24320 0.93172 0.81549 0.72149 1.90748 1.67886 1.37668 1.45187 1.21796 0.86013 1.04270 0.96300 0.81141 1.22458 1.03149 0.91305 0.96789 1.22636 0.92555 0.92197 0.95961 0.96315 1.62109 1.45253 1.12764 1.03417 1.22070 0.96606 0.92952 0.94700 1.21437 0.97958 0.96249 0.97077 1.18919 0.94770 0.93043 0.93065 1.22347 0.94915 1.13135 1.33272 0.93396 1.27275 1.01880 0.99349 0.94862 1.70914 1.00522 1.38681 1.48106 0.82991 0.72294 0.74598 0.76605 1.19702 1.19271 1.21412 1.21516 0.97534 0.95810 0.97956 1.22068 0.95037 0.96534 0.92616 1.22402 1.01517 0.91361 0.97898 1.21807 0.93337 1.03840 0.89401 0.81050 1.24307 0.84754 0.81730 0.80397 1.90738 1.56933 1.34543 1.59132 1.86531 1.49129 1.34074 1.56822 1.23519 0.85992 1.05861 0.91089 0.84171 0.92268 0.93351 0.85862 0.92171 0.98148 0.89027 0.93601 0.91680 0.99632 0.93552 0.92131 0.95628 0.98487 0.89326 0.91764 0.85755 0.93482 0.92098 0.84220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.56 113.37 1.20 1.62 16 2 O -0.35 -6.58 10.56 -51.37 -0.54 -7.12 16 3 C 0.44 10.46 4.97 71.24 0.35 10.82 16 4 O -0.53 -17.21 15.25 24.47 0.37 -16.83 16 5 C -0.06 -1.09 3.40 -10.81 -0.04 -1.13 16 6 H 0.17 1.30 8.14 -2.39 -0.02 1.28 16 7 C -0.10 -2.20 4.16 31.67 0.13 -2.07 16 8 C 0.07 2.16 2.50 46.21 0.12 2.27 16 9 H 0.02 0.71 8.11 -2.39 -0.02 0.69 16 10 N -0.51 -17.27 4.55 -863.57 -3.93 -21.20 16 11 C 0.06 2.40 5.35 86.33 0.46 2.87 16 12 C -0.09 -3.86 5.36 30.65 0.16 -3.70 16 13 C 0.02 1.09 1.86 -11.46 -0.02 1.07 16 14 C -0.60 -34.32 8.32 25.60 0.21 -34.11 16 15 H 0.05 2.69 7.81 -2.91 -0.02 2.67 16 16 C -0.04 -2.16 5.46 84.65 0.46 -1.70 16 17 N -0.94 -59.99 13.62 21.45 0.29 -59.70 16 18 Si 1.11 51.42 29.90 68.60 2.05 53.47 16 19 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 20 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 21 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 22 C -0.09 -4.18 5.37 30.65 0.16 -4.01 16 23 C 0.07 2.55 5.25 86.33 0.45 3.00 16 24 C -0.09 -1.99 4.69 31.67 0.15 -1.84 16 25 C -0.06 -1.06 3.40 -10.82 -0.04 -1.10 16 26 H 0.17 1.22 8.14 -2.39 -0.02 1.20 16 27 C 0.44 10.23 4.96 71.24 0.35 10.58 16 28 O -0.53 -16.78 15.26 24.48 0.37 -16.40 16 29 O -0.35 -6.45 10.57 -51.43 -0.54 -7.00 16 30 C 0.03 0.41 10.56 113.37 1.20 1.61 16 31 H 0.14 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.06 0.94 8.13 -2.39 -0.02 0.92 16 33 H 0.05 0.82 8.13 -2.38 -0.02 0.81 16 34 H 0.12 2.17 8.14 -2.38 -0.02 2.15 16 35 H 0.06 1.57 7.18 -2.39 -0.02 1.56 16 36 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 37 H 0.09 2.86 7.00 -2.39 -0.02 2.85 16 38 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.06 2.70 8.14 -2.39 -0.02 2.68 16 40 H -0.01 -0.87 6.72 -2.39 -0.02 -0.88 16 41 H 0.25 16.51 6.68 -92.71 -0.62 15.89 16 42 H 0.06 2.72 8.14 -2.39 -0.02 2.70 16 43 H 0.02 1.30 8.14 -2.38 -0.02 1.28 16 44 H 0.00 -0.14 8.14 -2.38 -0.02 -0.16 16 45 H 0.09 2.96 6.63 -2.38 -0.02 2.94 16 46 H 0.06 1.57 7.13 -2.39 -0.02 1.55 16 47 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 48 H 0.05 0.80 8.13 -2.39 -0.02 0.78 16 49 H 0.06 0.92 8.13 -2.39 -0.02 0.90 16 50 H 0.14 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -81.84 394.70 4.46 -77.38 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: 1.07 Total: 13.23 kcal Atomic # 6 Polarization: -21.14 SS G_CDS: 5.32 Total: -15.82 kcal Atomic # 7 Polarization: -77.27 SS G_CDS: -3.64 Total: -80.90 kcal Atomic # 8 Polarization: -47.02 SS G_CDS: -0.34 Total: -47.36 kcal Atomic # 14 Polarization: 51.42 SS G_CDS: 2.05 Total: 53.47 kcal Total: -81.84 4.46 -77.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173580582.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.900 kcal (2) G-P(sol) polarization free energy of solvation -81.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds