Wall clock time and date at job start Tue Mar 31 2020 23:30:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45198 * 1
3 3 C 1.34225 * 117.00127 * 2 1
4 4 O 1.20830 * 119.99998 * 359.97438 * 3 2 1
5 5 C 1.50699 * 120.00102 * 179.97438 * 3 2 1
6 6 H 1.08997 * 110.01284 * 332.20666 * 5 3 2
7 7 C 1.54270 * 110.03031 * 210.81557 * 5 3 2
8 8 C 1.54884 * 104.20017 * 264.32369 * 7 5 3
9 9 H 1.09000 * 110.75255 * 80.55615 * 8 7 5
10 10 N 1.46892 * 110.75858 * 203.74517 * 8 7 5
11 11 C 1.46849 * 111.00160 * 180.02562 * 10 8 7
12 12 C 1.53037 * 109.52450 * 185.84048 * 11 10 8
13 13 C 1.53121 * 109.27821 * 300.81693 * 12 11 10
14 14 C 1.50701 * 109.52379 * 177.56097 * 13 12 11
15 15 H 1.08003 * 119.99723 * 335.21817 * 14 13 12
16 16 C 1.37873 * 120.00100 * 155.22015 * 14 13 12
17 17 N 1.31519 * 119.99956 * 356.48973 * 16 14 13
18 18 Si 1.86799 * 120.00116 * 176.48924 * 16 14 13
19 19 H 1.48503 * 109.47087 * 59.99414 * 18 16 14
20 20 H 1.48505 * 109.46783 * 299.99981 * 18 16 14
21 21 H 1.48490 * 109.47273 * 180.02562 * 18 16 14
22 22 C 1.53121 * 109.20773 * 57.62550 * 13 12 11
23 23 C 1.46847 * 111.00434 * 304.20930 * 10 8 7
24 24 C 1.54897 * 102.74694 * 322.06032 * 8 7 5
25 25 C 1.53874 * 110.03442 * 93.65315 * 5 3 2
26 26 H 1.08993 * 110.03126 * 238.56977 * 25 5 3
27 27 C 1.50702 * 110.03225 * 359.97438 * 25 5 3
28 28 O 1.20826 * 119.99924 * 88.18197 * 27 25 5
29 29 O 1.34232 * 119.99972 * 268.18547 * 27 25 5
30 30 C 1.45202 * 116.99730 * 179.97438 * 29 27 25
31 31 H 1.08998 * 109.47411 * 179.97438 * 1 2 3
32 32 H 1.09000 * 109.47237 * 300.00480 * 1 2 3
33 33 H 1.09008 * 109.47098 * 60.00216 * 1 2 3
34 34 H 1.09007 * 110.48407 * 145.64206 * 7 5 3
35 35 H 1.09001 * 110.49026 * 23.00683 * 7 5 3
36 36 H 1.08995 * 109.46593 * 65.82161 * 11 10 8
37 37 H 1.09001 * 109.45222 * 305.85023 * 11 10 8
38 38 H 1.09001 * 109.50316 * 180.87869 * 12 11 10
39 39 H 1.09002 * 109.50493 * 60.76078 * 12 11 10
40 40 H 1.08992 * 109.52704 * 297.68983 * 13 12 11
41 41 H 0.96992 * 119.99617 * 5.36510 * 17 16 14
42 42 H 1.08999 * 109.50590 * 62.32196 * 22 13 12
43 43 H 1.09009 * 109.50093 * 182.43806 * 22 13 12
44 44 H 1.09005 * 109.45926 * 294.18137 * 23 10 8
45 45 H 1.09007 * 109.45697 * 54.14938 * 23 10 8
46 46 H 1.08996 * 110.48528 * 156.61717 * 24 8 7
47 47 H 1.08995 * 110.48387 * 279.26088 * 24 8 7
48 48 H 1.08993 * 109.47319 * 300.00159 * 30 29 27
49 49 H 1.08999 * 109.47105 * 60.00201 * 30 29 27
50 50 H 1.09001 * 109.46748 * 180.02562 * 30 29 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0614 1.1959 0.0000
4 8 1.4033 2.2093 -0.0005
5 6 3.5663 1.2748 0.0006
6 1 3.9860 0.3897 0.4785
7 6 4.0286 2.5457 0.7430
8 6 4.2445 3.5864 -0.3835
9 1 3.2957 4.0279 -0.6885
10 7 5.1876 4.6283 0.0440
11 6 5.3959 5.6185 -1.0202
12 6 6.4888 6.6024 -0.5966
13 6 6.0665 7.2998 0.6995
14 6 7.1650 8.2261 1.1540
15 1 8.1858 8.0414 0.8535
16 6 6.8667 9.3091 1.9533
17 7 5.6161 9.5737 2.2624
18 14 8.2390 10.4007 2.5973
19 1 8.9794 10.9918 1.4537
20 1 9.1695 9.5903 3.4236
21 1 7.6592 11.4872 3.4270
22 6 5.8081 6.2443 1.7783
23 6 4.7357 5.2703 1.2849
24 6 4.8499 2.7331 -1.5258
25 6 4.0885 1.3941 -1.4419
26 1 4.7623 0.5669 -1.6646
27 6 2.9339 1.3946 -2.4105
28 8 2.3948 2.4344 -2.7072
29 8 2.5045 0.2399 -2.9435
30 6 1.3877 0.3160 -3.8684
31 1 -0.3634 -1.0276 -0.0005
32 1 -0.3634 0.5139 0.8899
33 1 -0.3634 0.5138 -0.8901
34 1 4.9620 2.3590 1.2740
35 1 3.2571 2.8858 1.4339
36 1 4.4676 6.1613 -1.1980
37 1 5.6999 5.1098 -1.9350
38 1 6.6322 7.3465 -1.3801
39 1 7.4211 6.0621 -0.4321
40 1 5.1559 7.8727 0.5249
41 1 4.9109 8.9645 1.9937
42 1 6.7294 5.6983 1.9813
43 1 5.4654 6.7328 2.6906
44 1 3.8105 5.8148 1.0960
45 1 4.5601 4.5087 2.0447
46 1 4.6777 3.2101 -2.4906
47 1 5.9159 2.5768 -1.3612
48 1 0.5234 0.7432 -3.3600
49 1 1.6594 0.9463 -4.7151
50 1 1.1418 -0.6846 -4.2239
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001173580582.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 23:30:46
Heat of formation + Delta-G solvation = -199.279741 kcal
Electronic energy + Delta-G solvation = -31608.207575 eV
Core-core repulsion = 27406.196715 eV
Total energy + Delta-G solvation = -4202.010860 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 339.192 amu
Computer time = 0.95 seconds
Orbital eigenvalues (eV)
-42.62739 -41.12949 -40.33522 -38.56513 -37.54619 -37.27137 -35.56176 -33.07727
-31.93605 -30.67371 -30.10801 -28.56907 -28.22045 -26.67391 -24.66755 -24.07783
-23.38245 -22.85077 -21.18036 -20.71930 -20.60698 -19.45998 -18.86637 -18.43652
-18.30082 -17.80435 -17.24793 -16.98147 -16.80635 -16.12654 -15.66400 -15.61970
-15.54077 -15.06421 -14.74403 -14.68827 -14.64082 -14.38659 -14.24103 -14.11397
-13.32519 -13.30393 -13.21213 -13.16716 -13.02780 -12.91887 -12.82095 -12.61997
-12.22735 -12.21278 -12.07333 -11.97397 -11.96207 -11.94078 -11.90172 -11.82816
-11.69749 -11.36382 -11.29642 -10.96671 -10.45463 -10.34514 -9.36252 -8.57136
-6.27970 0.85561 1.00891 1.42167 1.53417 1.61821 1.76368 1.80537
2.59983 2.76322 3.21216 3.22518 3.23211 3.56432 3.78889 3.97795
4.02227 4.10404 4.12641 4.17886 4.20267 4.21296 4.22583 4.22956
4.32700 4.38181 4.39470 4.44060 4.46916 4.57677 4.62166 4.62930
4.69549 4.77778 4.80525 4.88203 4.96571 5.00582 5.04008 5.14580
5.20317 5.24983 5.26650 5.30266 5.57495 5.74260 6.08050 6.14755
6.18876 6.28335 6.54822 6.60236 6.68514 7.53073 8.80966
Molecular weight = 339.19amu
Principal moments of inertia in cm(-1)
A = 0.023797 B = 0.002606 C = 0.002485
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1176.317674 B =10740.839053 C =11267.089334
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.029 3.971
2 O -0.349 6.349
3 C 0.445 3.555
4 O -0.526 6.526
5 C -0.064 4.064
6 H 0.171 0.829
7 C -0.100 4.100
8 C 0.075 3.925
9 H 0.019 0.981
10 N -0.511 5.511
11 C 0.065 3.935
12 C -0.089 4.089
13 C 0.021 3.979
14 C -0.599 4.599
15 H 0.048 0.952
16 C -0.037 4.037
17 N -0.944 5.944
18 Si 1.113 2.887
19 H -0.272 1.272
20 H -0.268 1.268
21 H -0.288 1.288
22 C -0.090 4.090
23 C 0.065 3.935
24 C -0.094 4.094
25 C -0.065 4.065
26 H 0.172 0.828
27 C 0.445 3.555
28 O -0.525 6.525
29 O -0.350 6.350
30 C 0.029 3.971
31 H 0.140 0.860
32 H 0.059 0.941
33 H 0.048 0.952
34 H 0.123 0.877
35 H 0.060 0.940
36 H 0.000 1.000
37 H 0.091 0.909
38 H 0.045 0.955
39 H 0.064 0.936
40 H -0.015 1.015
41 H 0.254 0.746
42 H 0.060 0.940
43 H 0.025 0.975
44 H -0.003 1.003
45 H 0.089 0.911
46 H 0.064 0.936
47 H 0.124 0.876
48 H 0.046 0.954
49 H 0.060 0.940
50 H 0.140 0.860
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.672 -28.809 -8.529 30.576
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.065 4.065
2 O -0.265 6.265
3 C 0.288 3.712
4 O -0.415 6.415
5 C -0.084 4.084
6 H 0.189 0.811
7 C -0.137 4.137
8 C -0.033 4.033
9 H 0.037 0.963
10 N -0.235 5.235
11 C -0.063 4.063
12 C -0.127 4.127
13 C 0.002 3.998
14 C -0.637 4.637
15 H 0.066 0.934
16 C -0.234 4.234
17 N -0.582 5.582
18 Si 0.935 3.065
19 H -0.197 1.197
20 H -0.193 1.193
21 H -0.214 1.214
22 C -0.128 4.128
23 C -0.063 4.063
24 C -0.132 4.132
25 C -0.084 4.084
26 H 0.190 0.810
27 C 0.288 3.712
28 O -0.413 6.413
29 O -0.266 6.266
30 C -0.065 4.065
31 H 0.158 0.842
32 H 0.077 0.923
33 H 0.066 0.934
34 H 0.141 0.859
35 H 0.078 0.922
36 H 0.019 0.981
37 H 0.110 0.890
38 H 0.064 0.936
39 H 0.083 0.917
40 H 0.004 0.996
41 H 0.064 0.936
42 H 0.079 0.921
43 H 0.044 0.956
44 H 0.015 0.985
45 H 0.107 0.893
46 H 0.082 0.918
47 H 0.142 0.858
48 H 0.065 0.935
49 H 0.079 0.921
50 H 0.158 0.842
Dipole moment (debyes) X Y Z Total
from point charges -5.367 -27.078 -7.704 28.660
hybrid contribution -2.405 0.107 -1.195 2.688
sum -7.772 -26.971 -8.899 29.445
Atomic orbital electron populations
1.23522 0.75284 1.05868 1.01792 1.86527 1.24480 1.32040 1.83420
1.24320 0.93172 0.81549 0.72149 1.90748 1.67886 1.37668 1.45187
1.21796 0.86013 1.04270 0.96300 0.81141 1.22458 1.03149 0.91305
0.96789 1.22636 0.92555 0.92197 0.95961 0.96315 1.62109 1.45253
1.12764 1.03417 1.22070 0.96606 0.92952 0.94700 1.21437 0.97958
0.96249 0.97077 1.18919 0.94770 0.93043 0.93065 1.22347 0.94915
1.13135 1.33272 0.93396 1.27275 1.01880 0.99349 0.94862 1.70914
1.00522 1.38681 1.48106 0.82991 0.72294 0.74598 0.76605 1.19702
1.19271 1.21412 1.21516 0.97534 0.95810 0.97956 1.22068 0.95037
0.96534 0.92616 1.22402 1.01517 0.91361 0.97898 1.21807 0.93337
1.03840 0.89401 0.81050 1.24307 0.84754 0.81730 0.80397 1.90738
1.56933 1.34543 1.59132 1.86531 1.49129 1.34074 1.56822 1.23519
0.85992 1.05861 0.91089 0.84171 0.92268 0.93351 0.85862 0.92171
0.98148 0.89027 0.93601 0.91680 0.99632 0.93552 0.92131 0.95628
0.98487 0.89326 0.91764 0.85755 0.93482 0.92098 0.84220
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.42 10.56 113.37 1.20 1.62 16
2 O -0.35 -6.58 10.56 -51.37 -0.54 -7.12 16
3 C 0.44 10.46 4.97 71.24 0.35 10.82 16
4 O -0.53 -17.21 15.25 24.47 0.37 -16.83 16
5 C -0.06 -1.09 3.40 -10.81 -0.04 -1.13 16
6 H 0.17 1.30 8.14 -2.39 -0.02 1.28 16
7 C -0.10 -2.20 4.16 31.67 0.13 -2.07 16
8 C 0.07 2.16 2.50 46.21 0.12 2.27 16
9 H 0.02 0.71 8.11 -2.39 -0.02 0.69 16
10 N -0.51 -17.27 4.55 -863.57 -3.93 -21.20 16
11 C 0.06 2.40 5.35 86.33 0.46 2.87 16
12 C -0.09 -3.86 5.36 30.65 0.16 -3.70 16
13 C 0.02 1.09 1.86 -11.46 -0.02 1.07 16
14 C -0.60 -34.32 8.32 25.60 0.21 -34.11 16
15 H 0.05 2.69 7.81 -2.91 -0.02 2.67 16
16 C -0.04 -2.16 5.46 84.65 0.46 -1.70 16
17 N -0.94 -59.99 13.62 21.45 0.29 -59.70 16
18 Si 1.11 51.42 29.90 68.60 2.05 53.47 16
19 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16
20 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16
21 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16
22 C -0.09 -4.18 5.37 30.65 0.16 -4.01 16
23 C 0.07 2.55 5.25 86.33 0.45 3.00 16
24 C -0.09 -1.99 4.69 31.67 0.15 -1.84 16
25 C -0.06 -1.06 3.40 -10.82 -0.04 -1.10 16
26 H 0.17 1.22 8.14 -2.39 -0.02 1.20 16
27 C 0.44 10.23 4.96 71.24 0.35 10.58 16
28 O -0.53 -16.78 15.26 24.48 0.37 -16.40 16
29 O -0.35 -6.45 10.57 -51.43 -0.54 -7.00 16
30 C 0.03 0.41 10.56 113.37 1.20 1.61 16
31 H 0.14 0.96 8.14 -2.39 -0.02 0.94 16
32 H 0.06 0.94 8.13 -2.39 -0.02 0.92 16
33 H 0.05 0.82 8.13 -2.38 -0.02 0.81 16
34 H 0.12 2.17 8.14 -2.38 -0.02 2.15 16
35 H 0.06 1.57 7.18 -2.39 -0.02 1.56 16
36 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16
37 H 0.09 2.86 7.00 -2.39 -0.02 2.85 16
38 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16
39 H 0.06 2.70 8.14 -2.39 -0.02 2.68 16
40 H -0.01 -0.87 6.72 -2.39 -0.02 -0.88 16
41 H 0.25 16.51 6.68 -92.71 -0.62 15.89 16
42 H 0.06 2.72 8.14 -2.39 -0.02 2.70 16
43 H 0.02 1.30 8.14 -2.38 -0.02 1.28 16
44 H 0.00 -0.14 8.14 -2.38 -0.02 -0.16 16
45 H 0.09 2.96 6.63 -2.38 -0.02 2.94 16
46 H 0.06 1.57 7.13 -2.39 -0.02 1.55 16
47 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16
48 H 0.05 0.80 8.13 -2.39 -0.02 0.78 16
49 H 0.06 0.92 8.13 -2.39 -0.02 0.90 16
50 H 0.14 0.91 8.14 -2.39 -0.02 0.89 16
Total: -1.00 -81.84 394.70 4.46 -77.38
By element:
Atomic # 1 Polarization: 12.16 SS G_CDS: 1.07 Total: 13.23 kcal
Atomic # 6 Polarization: -21.14 SS G_CDS: 5.32 Total: -15.82 kcal
Atomic # 7 Polarization: -77.27 SS G_CDS: -3.64 Total: -80.90 kcal
Atomic # 8 Polarization: -47.02 SS G_CDS: -0.34 Total: -47.36 kcal
Atomic # 14 Polarization: 51.42 SS G_CDS: 2.05 Total: 53.47 kcal
Total: -81.84 4.46 -77.38 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001173580582.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -121.900 kcal
(2) G-P(sol) polarization free energy of solvation -81.839 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.739 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.459 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.380 kcal
(6) G-S(sol) free energy of system = (1) + (5) -199.280 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.95 seconds