Wall clock time and date at job start Tue Mar 31 2020 23:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34230 * 116.99732 * 2 1 4 4 O 1.20824 * 120.00140 * 359.97438 * 3 2 1 5 5 C 1.50696 * 119.99692 * 180.02562 * 3 2 1 6 6 H 1.09010 * 110.01800 * 331.83049 * 5 3 2 7 7 C 1.54262 * 110.03122 * 210.44293 * 5 3 2 8 8 C 1.54893 * 104.19281 * 264.32182 * 7 5 3 9 9 H 1.09000 * 110.75581 * 80.56164 * 8 7 5 10 10 N 1.46903 * 110.75234 * 203.74307 * 8 7 5 11 11 C 1.46844 * 111.00187 * 314.20559 * 10 8 7 12 12 C 1.53038 * 109.52141 * 174.16282 * 11 10 8 13 13 C 1.53123 * 109.31073 * 59.16697 * 12 11 10 14 14 C 1.53120 * 109.15392 * 302.40270 * 13 12 11 15 15 H 1.09006 * 109.50270 * 297.63081 * 14 13 12 16 16 C 1.50700 * 109.49946 * 177.55974 * 14 13 12 17 17 H 1.08004 * 119.99628 * 240.07385 * 16 14 13 18 18 C 1.37877 * 120.00402 * 60.07737 * 16 14 13 19 19 N 1.31508 * 120.00117 * 179.97438 * 18 16 14 20 20 Si 1.86798 * 119.99965 * 0.02562 * 18 16 14 21 21 H 1.48506 * 109.46883 * 270.00195 * 20 18 16 22 22 H 1.48501 * 109.47202 * 29.99637 * 20 18 16 23 23 H 1.48494 * 109.47658 * 150.00086 * 20 18 16 24 24 C 1.46851 * 110.99716 * 190.00330 * 10 8 7 25 25 C 1.54890 * 102.74774 * 322.05716 * 8 7 5 26 26 C 1.53878 * 110.03514 * 93.27187 * 5 3 2 27 27 H 1.09002 * 110.03296 * 238.56894 * 26 5 3 28 28 C 1.50699 * 110.03130 * 0.02562 * 26 5 3 29 29 O 1.20824 * 120.00181 * 88.21632 * 28 26 5 30 30 O 1.34230 * 119.99810 * 268.21662 * 28 26 5 31 31 C 1.45200 * 117.00026 * 179.97438 * 30 28 26 32 32 H 1.09000 * 109.47374 * 60.00621 * 1 2 3 33 33 H 1.09006 * 109.47454 * 180.02562 * 1 2 3 34 34 H 1.08998 * 109.47685 * 300.00115 * 1 2 3 35 35 H 1.09002 * 110.48872 * 145.64263 * 7 5 3 36 36 H 1.09001 * 110.48960 * 23.00143 * 7 5 3 37 37 H 1.08993 * 109.46917 * 294.18382 * 11 10 8 38 38 H 1.09000 * 109.46007 * 54.16101 * 11 10 8 39 39 H 1.09011 * 109.49984 * 179.12748 * 12 11 10 40 40 H 1.09002 * 109.50460 * 299.20011 * 12 11 10 41 41 H 1.08996 * 109.55529 * 182.48260 * 13 12 11 42 42 H 1.08989 * 109.49367 * 62.28688 * 13 12 11 43 43 H 0.97004 * 120.00096 * 180.02562 * 19 18 16 44 44 H 1.08996 * 109.46505 * 65.82236 * 24 10 8 45 45 H 1.09000 * 109.45291 * 305.84760 * 24 10 8 46 46 H 1.09001 * 110.48108 * 156.62029 * 25 8 7 47 47 H 1.09004 * 110.48363 * 279.26330 * 25 8 7 48 48 H 1.08999 * 109.47020 * 59.99671 * 31 30 28 49 49 H 1.08992 * 109.47707 * 180.02562 * 31 30 28 50 50 H 1.09001 * 109.46907 * 300.00349 * 31 30 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5662 1.2749 -0.0006 6 1 3.9863 0.3926 0.4826 7 6 4.0288 2.5502 0.7338 8 6 4.2443 3.5840 -0.3993 9 1 3.2954 4.0237 -0.7066 10 7 5.1877 4.6285 0.0214 11 6 4.8686 5.1135 1.3702 12 6 5.9520 6.0909 1.8318 13 6 6.0261 7.2647 0.8514 14 6 6.3105 6.7281 -0.5543 15 1 7.2788 6.2276 -0.5637 16 6 6.3256 7.8716 -1.5357 17 1 5.6260 7.8863 -2.3584 18 6 7.2325 8.8988 -1.3835 19 7 7.2460 9.8964 -2.2403 20 14 8.4431 8.8729 0.0389 21 1 7.8441 9.5601 1.2112 22 1 8.7564 7.4661 0.3967 23 1 9.6910 9.5718 -0.3603 24 6 5.2167 5.7323 -0.9467 25 6 4.8491 2.7236 -1.5364 26 6 4.0878 1.3852 -1.4441 27 1 4.7616 0.5565 -1.6620 28 6 2.9328 1.3809 -2.4120 29 8 2.3947 2.4194 -2.7151 30 8 2.5018 0.2234 -2.9375 31 6 1.3846 0.2947 -3.8622 32 1 -0.3634 0.5137 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 -0.3634 0.5138 0.8899 35 1 4.9625 2.3668 1.2655 36 1 3.2577 2.8946 1.4229 37 1 3.9042 5.6211 1.3550 38 1 4.8239 4.2696 2.0585 39 1 5.7068 6.4626 2.8268 40 1 6.9144 5.5799 1.8613 41 1 6.8263 7.9410 1.1518 42 1 5.0765 7.7995 0.8519 43 1 7.8844 10.6190 -2.1335 44 1 4.2507 6.2370 -0.9511 45 1 5.4248 5.3376 -1.9411 46 1 4.6765 3.1947 -2.5041 47 1 5.9153 2.5683 -1.3714 48 1 1.6565 0.9194 -4.7130 49 1 1.1372 -0.7077 -4.2113 50 1 0.5210 0.7263 -3.3561 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173584137.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:27 Heat of formation + Delta-G solvation = -163.730998 kcal Electronic energy + Delta-G solvation = -31864.035452 eV Core-core repulsion = 27663.566101 eV Total energy + Delta-G solvation = -4200.469351 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.65161 -40.17081 -39.03138 -37.39068 -36.57058 -36.11929 -33.43608 -31.92269 -30.53154 -29.70271 -29.07008 -27.80813 -27.19376 -24.94172 -23.50326 -23.28742 -21.87338 -21.21916 -19.92823 -19.63449 -18.91736 -18.45416 -17.48353 -17.34933 -16.89364 -16.66655 -16.09256 -16.02335 -15.91511 -14.99392 -14.60077 -14.13419 -14.09464 -13.76792 -13.67533 -13.54014 -13.17782 -13.00042 -12.85516 -12.64520 -12.45873 -12.35156 -12.25670 -12.09319 -12.01366 -11.79546 -11.42461 -11.13144 -11.04727 -11.01536 -10.97083 -10.90899 -10.79129 -10.64905 -10.40775 -10.35254 -9.99172 -9.86787 -9.59177 -9.03076 -8.86487 -8.45910 -7.77416 -6.01250 -3.99973 1.82154 1.97877 2.26131 2.58765 3.32610 3.43143 3.46736 3.94776 4.16937 4.34636 4.42797 4.47376 4.63723 4.78363 4.83584 4.87400 4.93256 4.95195 5.02646 5.11070 5.20053 5.23509 5.29236 5.30073 5.39312 5.49625 5.54983 5.63885 5.77605 5.86864 5.88252 6.05849 6.07725 6.10012 6.17308 6.22537 6.31110 6.38218 6.38722 6.59015 6.68931 6.87631 6.90374 7.27278 7.46006 7.47968 7.55634 7.67250 7.71523 7.92898 8.59020 9.02892 9.61586 11.12177 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.019657 B = 0.003058 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.109820 B = 9154.203359 C = 9931.252668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.354 6.354 3 C 0.448 3.552 4 O -0.480 6.480 5 C -0.070 4.070 6 H 0.121 0.879 7 C -0.106 4.106 8 C 0.082 3.918 9 H 0.064 0.936 10 N -0.532 5.532 11 C 0.060 3.940 12 C -0.119 4.119 13 C -0.123 4.123 14 C 0.021 3.979 15 H 0.035 0.965 16 C -0.513 4.513 17 H 0.072 0.928 18 C 0.069 3.931 19 N -0.904 5.904 20 Si 0.889 3.111 21 H -0.281 1.281 22 H -0.263 1.263 23 H -0.300 1.300 24 C 0.078 3.922 25 C -0.100 4.100 26 C -0.070 4.070 27 H 0.122 0.878 28 C 0.446 3.554 29 O -0.477 6.477 30 O -0.355 6.355 31 C 0.035 3.965 32 H 0.059 0.941 33 H 0.102 0.898 34 H 0.063 0.937 35 H 0.097 0.903 36 H 0.078 0.922 37 H 0.028 0.972 38 H 0.066 0.934 39 H 0.052 0.948 40 H 0.063 0.937 41 H 0.046 0.954 42 H 0.055 0.945 43 H 0.263 0.737 44 H 0.027 0.973 45 H 0.067 0.933 46 H 0.081 0.919 47 H 0.099 0.901 48 H 0.064 0.936 49 H 0.101 0.899 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.159 -25.398 5.024 27.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.271 6.271 3 C 0.289 3.711 4 O -0.365 6.365 5 C -0.090 4.090 6 H 0.139 0.861 7 C -0.144 4.144 8 C -0.027 4.027 9 H 0.081 0.919 10 N -0.257 5.257 11 C -0.068 4.068 12 C -0.157 4.157 13 C -0.161 4.161 14 C 0.002 3.998 15 H 0.053 0.947 16 C -0.551 4.551 17 H 0.090 0.910 18 C -0.132 4.132 19 N -0.542 5.542 20 Si 0.719 3.281 21 H -0.208 1.208 22 H -0.188 1.188 23 H -0.227 1.227 24 C -0.049 4.049 25 C -0.137 4.137 26 C -0.090 4.090 27 H 0.140 0.860 28 C 0.287 3.713 29 O -0.362 6.362 30 O -0.272 6.272 31 C -0.059 4.059 32 H 0.078 0.922 33 H 0.120 0.880 34 H 0.082 0.918 35 H 0.116 0.884 36 H 0.096 0.904 37 H 0.046 0.954 38 H 0.084 0.916 39 H 0.071 0.929 40 H 0.082 0.918 41 H 0.064 0.936 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.045 0.955 45 H 0.085 0.915 46 H 0.100 0.900 47 H 0.118 0.882 48 H 0.083 0.917 49 H 0.120 0.880 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.058 -24.809 4.862 27.208 hybrid contribution -0.704 0.643 0.506 1.079 sum -10.762 -24.166 5.367 26.993 Atomic orbital electron populations 1.23257 0.76490 1.03612 1.02496 1.86537 1.23275 1.33185 1.84067 1.23759 0.92110 0.81757 0.73453 1.90744 1.66680 1.36078 1.43047 1.21649 0.87551 1.03385 0.96396 0.86094 1.22560 1.02265 0.91598 0.97952 1.22575 0.94808 0.92051 0.93262 0.91850 1.62116 1.48263 1.12533 1.02758 1.22037 0.97064 0.97340 0.90339 1.21654 0.98846 0.97025 0.98130 1.22028 1.00816 0.96097 0.97130 1.19152 0.94674 0.93922 0.92046 0.94651 1.21028 1.18673 1.04032 1.11359 0.91002 1.24989 0.96965 0.95194 0.96029 1.69906 1.37059 1.10593 1.36651 0.86814 0.80242 0.78549 0.82452 1.20803 1.18759 1.22740 1.22091 0.98766 0.89994 0.94077 1.22426 1.00073 0.90704 1.00546 1.21679 0.93695 1.03562 0.90069 0.86029 1.23758 0.84749 0.82004 0.80747 1.90753 1.55370 1.33005 1.57052 1.86532 1.48667 1.35038 1.56973 1.23253 0.87104 1.03616 0.91893 0.92220 0.87987 0.91835 0.88417 0.90366 0.95391 0.91581 0.92910 0.91813 0.93611 0.92617 0.92760 0.95508 0.91461 0.90015 0.88226 0.91697 0.88036 0.92317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.56 101.05 1.07 1.35 16 2 O -0.35 -3.69 10.57 -39.26 -0.41 -4.10 16 3 C 0.45 5.49 4.97 36.00 0.18 5.67 16 4 O -0.48 -7.51 15.27 -21.21 -0.32 -7.83 16 5 C -0.07 -0.70 3.40 -90.66 -0.31 -1.01 16 6 H 0.12 0.80 8.14 -51.92 -0.42 0.37 16 7 C -0.11 -1.21 3.93 -25.07 -0.10 -1.31 16 8 C 0.08 1.21 2.57 -65.72 -0.17 1.04 16 9 H 0.06 1.15 8.05 -51.93 -0.42 0.73 16 10 N -0.53 -9.08 4.55 -224.31 -1.02 -10.10 16 11 C 0.06 0.97 5.08 -3.83 -0.02 0.95 16 12 C -0.12 -2.09 6.09 -26.65 -0.16 -2.25 16 13 C -0.12 -2.70 4.74 -26.61 -0.13 -2.83 16 14 C 0.02 0.51 1.85 -91.69 -0.17 0.34 16 15 H 0.04 0.87 7.20 -51.93 -0.37 0.50 16 16 C -0.51 -14.62 9.14 -34.44 -0.31 -14.94 16 17 H 0.07 2.23 7.99 -52.48 -0.42 1.81 16 18 C 0.07 2.03 5.45 -17.82 -0.10 1.94 16 19 N -0.90 -28.15 13.96 55.43 0.77 -27.38 16 20 Si 0.89 22.36 24.35 -169.99 -4.14 18.22 16 21 H -0.28 -6.91 6.89 56.52 0.39 -6.52 16 22 H -0.26 -6.31 6.53 56.52 0.37 -5.94 16 23 H -0.30 -7.56 7.11 56.52 0.40 -7.16 16 24 C 0.08 1.62 4.57 -3.84 -0.02 1.60 16 25 C -0.10 -1.28 5.12 -25.08 -0.13 -1.40 16 26 C -0.07 -0.74 3.41 -90.66 -0.31 -1.05 16 27 H 0.12 0.88 8.14 -51.93 -0.42 0.46 16 28 C 0.45 5.78 4.96 36.01 0.18 5.96 16 29 O -0.48 -7.89 15.28 -21.21 -0.32 -8.22 16 30 O -0.36 -3.92 10.57 -39.26 -0.41 -4.33 16 31 C 0.04 0.30 10.56 101.05 1.07 1.37 16 32 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 33 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 35 H 0.10 0.95 7.70 -51.93 -0.40 0.55 16 36 H 0.08 0.95 7.27 -51.93 -0.38 0.57 16 37 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.88 6.20 -51.93 -0.32 0.56 16 39 H 0.05 0.82 8.14 -51.92 -0.42 0.39 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.05 1.06 3.35 -51.93 -0.17 0.89 16 42 H 0.06 1.25 8.14 -51.94 -0.42 0.83 16 43 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 44 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.07 1.41 7.52 -51.93 -0.39 1.02 16 46 H 0.08 1.20 7.29 -51.93 -0.38 0.82 16 47 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 48 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 49 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 50 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 LS Contribution 386.29 15.07 5.82 5.82 Total: -1.00 -35.19 386.29 -7.82 -43.01 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -8.35 Total: -0.52 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: 0.57 Total: -4.57 kcal Atomic # 7 Polarization: -37.23 SS G_CDS: -0.25 Total: -37.48 kcal Atomic # 8 Polarization: -23.01 SS G_CDS: -1.48 Total: -24.48 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.14 Total: 18.22 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.19 -7.82 -43.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173584137.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.720 kcal (2) G-P(sol) polarization free energy of solvation -35.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds