Wall clock time and date at job start Tue Mar 31 2020 23:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34230 * 116.99732 * 2 1 4 4 O 1.20824 * 120.00140 * 359.97438 * 3 2 1 5 5 C 1.50696 * 119.99692 * 180.02562 * 3 2 1 6 6 H 1.09010 * 110.01800 * 331.83049 * 5 3 2 7 7 C 1.54262 * 110.03122 * 210.44293 * 5 3 2 8 8 C 1.54893 * 104.19281 * 264.32182 * 7 5 3 9 9 H 1.09000 * 110.75581 * 80.56164 * 8 7 5 10 10 N 1.46903 * 110.75234 * 203.74307 * 8 7 5 11 11 C 1.46844 * 111.00187 * 314.20559 * 10 8 7 12 12 C 1.53038 * 109.52141 * 174.16282 * 11 10 8 13 13 C 1.53123 * 109.31073 * 59.16697 * 12 11 10 14 14 C 1.53120 * 109.15392 * 302.40270 * 13 12 11 15 15 H 1.09006 * 109.50270 * 297.63081 * 14 13 12 16 16 C 1.50700 * 109.49946 * 177.55974 * 14 13 12 17 17 H 1.08004 * 119.99628 * 240.07385 * 16 14 13 18 18 C 1.37877 * 120.00402 * 60.07737 * 16 14 13 19 19 N 1.31508 * 120.00117 * 179.97438 * 18 16 14 20 20 Si 1.86798 * 119.99965 * 0.02562 * 18 16 14 21 21 H 1.48506 * 109.46883 * 270.00195 * 20 18 16 22 22 H 1.48501 * 109.47202 * 29.99637 * 20 18 16 23 23 H 1.48494 * 109.47658 * 150.00086 * 20 18 16 24 24 C 1.46851 * 110.99716 * 190.00330 * 10 8 7 25 25 C 1.54890 * 102.74774 * 322.05716 * 8 7 5 26 26 C 1.53878 * 110.03514 * 93.27187 * 5 3 2 27 27 H 1.09002 * 110.03296 * 238.56894 * 26 5 3 28 28 C 1.50699 * 110.03130 * 0.02562 * 26 5 3 29 29 O 1.20824 * 120.00181 * 88.21632 * 28 26 5 30 30 O 1.34230 * 119.99810 * 268.21662 * 28 26 5 31 31 C 1.45200 * 117.00026 * 179.97438 * 30 28 26 32 32 H 1.09000 * 109.47374 * 60.00621 * 1 2 3 33 33 H 1.09006 * 109.47454 * 180.02562 * 1 2 3 34 34 H 1.08998 * 109.47685 * 300.00115 * 1 2 3 35 35 H 1.09002 * 110.48872 * 145.64263 * 7 5 3 36 36 H 1.09001 * 110.48960 * 23.00143 * 7 5 3 37 37 H 1.08993 * 109.46917 * 294.18382 * 11 10 8 38 38 H 1.09000 * 109.46007 * 54.16101 * 11 10 8 39 39 H 1.09011 * 109.49984 * 179.12748 * 12 11 10 40 40 H 1.09002 * 109.50460 * 299.20011 * 12 11 10 41 41 H 1.08996 * 109.55529 * 182.48260 * 13 12 11 42 42 H 1.08989 * 109.49367 * 62.28688 * 13 12 11 43 43 H 0.97004 * 120.00096 * 180.02562 * 19 18 16 44 44 H 1.08996 * 109.46505 * 65.82236 * 24 10 8 45 45 H 1.09000 * 109.45291 * 305.84760 * 24 10 8 46 46 H 1.09001 * 110.48108 * 156.62029 * 25 8 7 47 47 H 1.09004 * 110.48363 * 279.26330 * 25 8 7 48 48 H 1.08999 * 109.47020 * 59.99671 * 31 30 28 49 49 H 1.08992 * 109.47707 * 180.02562 * 31 30 28 50 50 H 1.09001 * 109.46907 * 300.00349 * 31 30 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5662 1.2749 -0.0006 6 1 3.9863 0.3926 0.4826 7 6 4.0288 2.5502 0.7338 8 6 4.2443 3.5840 -0.3993 9 1 3.2954 4.0237 -0.7066 10 7 5.1877 4.6285 0.0214 11 6 4.8686 5.1135 1.3702 12 6 5.9520 6.0909 1.8318 13 6 6.0261 7.2647 0.8514 14 6 6.3105 6.7281 -0.5543 15 1 7.2788 6.2276 -0.5637 16 6 6.3256 7.8716 -1.5357 17 1 5.6260 7.8863 -2.3584 18 6 7.2325 8.8988 -1.3835 19 7 7.2460 9.8964 -2.2403 20 14 8.4431 8.8729 0.0389 21 1 7.8441 9.5601 1.2112 22 1 8.7564 7.4661 0.3967 23 1 9.6910 9.5718 -0.3603 24 6 5.2167 5.7323 -0.9467 25 6 4.8491 2.7236 -1.5364 26 6 4.0878 1.3852 -1.4441 27 1 4.7616 0.5565 -1.6620 28 6 2.9328 1.3809 -2.4120 29 8 2.3947 2.4194 -2.7151 30 8 2.5018 0.2234 -2.9375 31 6 1.3846 0.2947 -3.8622 32 1 -0.3634 0.5137 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 -0.3634 0.5138 0.8899 35 1 4.9625 2.3668 1.2655 36 1 3.2577 2.8946 1.4229 37 1 3.9042 5.6211 1.3550 38 1 4.8239 4.2696 2.0585 39 1 5.7068 6.4626 2.8268 40 1 6.9144 5.5799 1.8613 41 1 6.8263 7.9410 1.1518 42 1 5.0765 7.7995 0.8519 43 1 7.8844 10.6190 -2.1335 44 1 4.2507 6.2370 -0.9511 45 1 5.4248 5.3376 -1.9411 46 1 4.6765 3.1947 -2.5041 47 1 5.9153 2.5683 -1.3714 48 1 1.6565 0.9194 -4.7130 49 1 1.1372 -0.7077 -4.2113 50 1 0.5210 0.7263 -3.3561 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173584137.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:26 Heat of formation + Delta-G solvation = -187.919185 kcal Electronic energy + Delta-G solvation = -31865.084331 eV Core-core repulsion = 27663.566101 eV Total energy + Delta-G solvation = -4201.518230 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.59512 -41.10246 -40.31730 -38.53388 -37.52088 -37.22214 -35.22953 -33.65223 -32.15382 -30.74124 -30.11494 -28.58864 -28.08817 -26.84181 -24.94450 -24.31815 -22.99698 -22.67321 -21.09540 -20.63916 -20.46986 -19.44888 -18.79913 -18.40702 -18.26895 -17.77499 -17.43511 -16.95526 -16.77560 -16.40408 -16.03761 -15.55680 -15.43730 -14.89240 -14.82972 -14.67179 -14.59953 -14.31911 -14.11097 -14.04529 -14.00382 -13.31135 -13.18144 -13.12106 -13.04678 -12.91101 -12.81445 -12.64983 -12.39798 -12.15170 -12.09155 -11.94197 -11.89622 -11.83220 -11.75587 -11.72645 -11.66296 -11.34507 -11.29033 -10.99059 -10.75876 -10.59568 -9.25194 -8.30160 -6.34792 0.88846 1.04168 1.31944 1.37846 1.45063 1.50240 1.79392 2.34252 2.84972 3.05519 3.25950 3.29103 3.59897 3.82166 4.02440 4.04935 4.11983 4.14175 4.16010 4.21689 4.23187 4.24819 4.26428 4.37218 4.40674 4.44733 4.48459 4.50217 4.58921 4.64578 4.67398 4.73022 4.83301 4.85993 4.92655 5.00174 5.05726 5.08424 5.16033 5.19742 5.28050 5.30253 5.31685 5.45178 5.63943 5.74627 6.13531 6.26804 6.35092 6.57933 6.63343 6.72669 7.30753 8.87331 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.019657 B = 0.003058 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.109820 B = 9154.203359 C = 9931.252668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.349 6.349 3 C 0.445 3.555 4 O -0.526 6.526 5 C -0.064 4.064 6 H 0.174 0.826 7 C -0.097 4.097 8 C 0.076 3.924 9 H 0.017 0.983 10 N -0.520 5.520 11 C 0.057 3.943 12 C -0.111 4.111 13 C -0.125 4.125 14 C 0.025 3.975 15 H 0.037 0.963 16 C -0.524 4.524 17 H 0.022 0.978 18 C 0.009 3.991 19 N -0.954 5.954 20 Si 0.958 3.042 21 H -0.268 1.268 22 H -0.237 1.237 23 H -0.299 1.299 24 C 0.091 3.909 25 C -0.098 4.098 26 C -0.065 4.065 27 H 0.170 0.830 28 C 0.443 3.557 29 O -0.527 6.527 30 O -0.349 6.349 31 C 0.029 3.971 32 H 0.045 0.955 33 H 0.139 0.861 34 H 0.061 0.939 35 H 0.131 0.869 36 H 0.070 0.930 37 H 0.011 0.989 38 H 0.110 0.890 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.039 0.961 42 H 0.037 0.963 43 H 0.266 0.734 44 H -0.004 1.004 45 H 0.055 0.945 46 H 0.049 0.951 47 H 0.121 0.879 48 H 0.057 0.943 49 H 0.141 0.859 50 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.520 -29.695 8.270 31.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.265 6.265 3 C 0.288 3.712 4 O -0.414 6.414 5 C -0.084 4.084 6 H 0.191 0.809 7 C -0.135 4.135 8 C -0.033 4.033 9 H 0.035 0.965 10 N -0.244 5.244 11 C -0.071 4.071 12 C -0.149 4.149 13 C -0.163 4.163 14 C 0.006 3.994 15 H 0.055 0.945 16 C -0.562 4.562 17 H 0.040 0.960 18 C -0.188 4.188 19 N -0.595 5.595 20 Si 0.784 3.216 21 H -0.195 1.195 22 H -0.160 1.160 23 H -0.227 1.227 24 C -0.037 4.037 25 C -0.135 4.135 26 C -0.084 4.084 27 H 0.187 0.813 28 C 0.286 3.714 29 O -0.415 6.415 30 O -0.265 6.265 31 C -0.065 4.065 32 H 0.064 0.936 33 H 0.157 0.843 34 H 0.080 0.920 35 H 0.149 0.851 36 H 0.088 0.912 37 H 0.029 0.971 38 H 0.128 0.872 39 H 0.101 0.899 40 H 0.096 0.904 41 H 0.057 0.943 42 H 0.056 0.944 43 H 0.074 0.926 44 H 0.014 0.986 45 H 0.073 0.927 46 H 0.068 0.932 47 H 0.139 0.861 48 H 0.076 0.924 49 H 0.159 0.841 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.435 -29.174 8.114 31.434 hybrid contribution -1.409 1.971 -0.676 2.515 sum -9.845 -27.203 7.438 29.870 Atomic orbital electron populations 1.23511 0.75344 1.05802 1.01793 1.86530 1.24428 1.32106 1.83437 1.24322 0.93175 0.81530 0.72147 1.90743 1.67875 1.37634 1.45155 1.21819 0.85984 1.04667 0.95901 0.80859 1.22540 1.03605 0.90794 0.96525 1.22607 0.92363 0.92252 0.96036 0.96450 1.62138 1.48919 1.11013 1.02315 1.22196 0.95840 0.98682 0.90351 1.21635 0.99984 0.95211 0.98062 1.21943 0.99533 0.97866 0.96908 1.19043 0.95451 0.92671 0.92278 0.94503 1.21360 1.17536 1.06105 1.11240 0.95964 1.25949 0.99165 0.94482 0.99157 1.70073 1.38498 1.11741 1.39170 0.85698 0.77165 0.79998 0.78723 1.19451 1.16049 1.22687 1.21739 0.96231 0.90782 0.94950 1.22383 1.01482 0.91579 0.98105 1.21817 0.93161 1.03564 0.89848 0.81259 1.24383 0.84812 0.81686 0.80488 1.90751 1.57063 1.34783 1.58884 1.86525 1.49098 1.33925 1.56986 1.23509 0.86038 1.05823 0.91084 0.93576 0.84290 0.92022 0.85091 0.91179 0.97076 0.87220 0.89933 0.90438 0.94297 0.94408 0.92553 0.98619 0.92680 0.93192 0.86083 0.92441 0.84124 0.93354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.56 113.37 1.20 1.61 16 2 O -0.35 -6.38 10.57 -51.42 -0.54 -6.92 16 3 C 0.44 10.12 4.97 71.23 0.35 10.47 16 4 O -0.53 -16.69 15.27 24.33 0.37 -16.31 16 5 C -0.06 -1.04 3.40 -10.82 -0.04 -1.08 16 6 H 0.17 1.09 8.14 -2.38 -0.02 1.07 16 7 C -0.10 -1.89 3.93 31.67 0.12 -1.77 16 8 C 0.08 2.22 2.57 46.21 0.12 2.34 16 9 H 0.02 0.68 8.05 -2.39 -0.02 0.66 16 10 N -0.52 -17.27 4.55 -863.59 -3.93 -21.20 16 11 C 0.06 1.70 5.08 86.33 0.44 2.13 16 12 C -0.11 -3.53 6.09 30.65 0.19 -3.34 16 13 C -0.12 -5.38 4.74 30.68 0.15 -5.23 16 14 C 0.02 1.20 1.85 -11.49 -0.02 1.18 16 15 H 0.04 1.78 7.20 -2.38 -0.02 1.77 16 16 C -0.52 -31.57 9.14 25.60 0.23 -31.34 16 17 H 0.02 1.50 7.99 -2.91 -0.02 1.48 16 18 C 0.01 0.54 5.45 84.66 0.46 1.00 16 19 N -0.95 -62.10 13.96 21.45 0.30 -61.81 16 20 Si 0.96 46.16 24.35 68.60 1.67 47.83 16 21 H -0.27 -12.33 6.89 99.48 0.69 -11.65 16 22 H -0.24 -10.38 6.53 99.48 0.65 -9.73 16 23 H -0.30 -14.30 7.11 99.48 0.71 -13.60 16 24 C 0.09 3.99 4.57 86.32 0.39 4.39 16 25 C -0.10 -2.40 5.12 31.67 0.16 -2.24 16 26 C -0.06 -1.18 3.41 -10.82 -0.04 -1.21 16 27 H 0.17 1.52 8.14 -2.39 -0.02 1.50 16 28 C 0.44 11.23 4.96 71.24 0.35 11.58 16 29 O -0.53 -18.44 15.28 24.33 0.37 -18.07 16 30 O -0.35 -7.12 10.57 -51.41 -0.54 -7.67 16 31 C 0.03 0.47 10.56 113.37 1.20 1.67 16 32 H 0.05 0.79 8.13 -2.39 -0.02 0.77 16 33 H 0.14 0.91 8.14 -2.38 -0.02 0.89 16 34 H 0.06 0.91 8.13 -2.39 -0.02 0.89 16 35 H 0.13 1.74 7.70 -2.39 -0.02 1.73 16 36 H 0.07 1.52 7.27 -2.39 -0.02 1.51 16 37 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 38 H 0.11 2.40 6.20 -2.39 -0.01 2.38 16 39 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 40 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 41 H 0.04 1.72 3.35 -2.39 -0.01 1.71 16 42 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.27 16.11 8.31 -92.71 -0.77 15.34 16 44 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 45 H 0.05 2.49 7.52 -2.39 -0.02 2.47 16 46 H 0.05 1.54 7.29 -2.39 -0.02 1.52 16 47 H 0.12 2.46 8.14 -2.39 -0.02 2.44 16 48 H 0.06 1.03 8.13 -2.39 -0.02 1.01 16 49 H 0.14 1.15 8.14 -2.39 -0.02 1.14 16 50 H 0.05 0.90 8.13 -2.39 -0.02 0.88 16 Total: -1.00 -85.38 386.29 3.81 -81.57 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: 0.85 Total: 12.42 kcal Atomic # 6 Polarization: -15.11 SS G_CDS: 5.27 Total: -9.84 kcal Atomic # 7 Polarization: -79.38 SS G_CDS: -3.63 Total: -83.01 kcal Atomic # 8 Polarization: -48.63 SS G_CDS: -0.34 Total: -48.97 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 1.67 Total: 47.83 kcal Total: -85.38 3.81 -81.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173584137.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.348 kcal (2) G-P(sol) polarization free energy of solvation -85.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds