Wall clock time and date at job start Tue Mar 31 2020 23:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35725 * 117.00549 * 2 1 4 4 C 1.39365 * 120.35692 * 359.97438 * 3 2 1 5 5 N 1.31290 * 120.87979 * 180.02562 * 4 3 2 6 6 C 1.32884 * 121.72051 * 359.97438 * 5 4 3 7 7 C 1.47757 * 119.69021 * 179.97438 * 6 5 4 8 8 O 1.21557 * 120.00330 * 179.97438 * 7 6 5 9 9 N 1.34782 * 119.99462 * 359.97438 * 7 6 5 10 10 C 1.46495 * 119.99464 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.47176 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47796 * 180.02562 * 11 10 9 13 13 C 1.52999 * 109.47796 * 179.97438 * 12 11 10 14 14 C 1.52999 * 109.47281 * 179.97438 * 13 12 11 15 15 C 1.53001 * 109.46921 * 179.97438 * 14 13 12 16 16 N 1.46501 * 109.47142 * 180.02562 * 15 14 13 17 17 C 1.36936 * 120.00152 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99702 * 359.97438 * 17 16 15 19 19 C 1.38807 * 120.00056 * 179.97438 * 17 16 15 20 20 N 1.31615 * 119.99957 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 119.99895 * 0.02562 * 19 17 16 22 22 H 1.48507 * 109.47003 * 90.00107 * 21 19 17 23 23 H 1.48499 * 109.46950 * 209.99584 * 21 19 17 24 24 H 1.48493 * 109.47189 * 330.00021 * 21 19 17 25 25 C 1.39723 * 120.62418 * 359.97438 * 6 5 4 26 26 F 1.35098 * 120.46204 * 180.02562 * 25 6 5 27 27 C 1.38682 * 119.06913 * 0.02562 * 25 6 5 28 28 H 1.09000 * 109.46669 * 60.00030 * 1 2 3 29 29 H 1.08994 * 109.47396 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47297 * 300.01012 * 1 2 3 31 31 H 1.08000 * 119.55513 * 359.74272 * 4 3 2 32 32 H 0.96994 * 120.00564 * 0.02562 * 9 7 6 33 33 H 1.09004 * 109.47668 * 300.00212 * 10 9 7 34 34 H 1.08994 * 109.47666 * 60.00479 * 10 9 7 35 35 H 1.09006 * 109.47151 * 300.00293 * 11 10 9 36 36 H 1.09004 * 109.47131 * 59.99904 * 11 10 9 37 37 H 1.09006 * 109.46758 * 300.00225 * 12 11 10 38 38 H 1.08996 * 109.47261 * 59.99309 * 12 11 10 39 39 H 1.09004 * 109.46650 * 300.00105 * 13 12 11 40 40 H 1.09002 * 109.46628 * 59.99478 * 13 12 11 41 41 H 1.08990 * 109.47484 * 299.99887 * 14 13 12 42 42 H 1.08999 * 109.46674 * 60.00213 * 14 13 12 43 43 H 1.09004 * 109.47157 * 300.00598 * 15 14 13 44 44 H 1.09004 * 109.46983 * 60.00309 * 15 14 13 45 45 H 0.97003 * 119.99909 * 0.02562 * 16 15 14 46 46 H 0.97004 * 119.99893 * 179.97438 * 20 19 17 47 47 H 1.07997 * 120.78892 * 180.02562 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 1.2936 2.3828 -0.0005 5 7 1.8791 3.5580 -0.0010 6 6 3.2024 3.6793 -0.0006 7 6 3.8140 5.0243 -0.0017 8 8 5.0238 5.1419 -0.0008 9 7 3.0303 6.1209 -0.0038 10 6 3.6367 7.4545 -0.0044 11 6 2.5347 8.5158 -0.0062 12 6 3.1678 9.9086 -0.0075 13 6 2.0659 10.9700 -0.0099 14 6 2.6991 12.3628 -0.0106 15 6 1.5971 13.4241 -0.0136 16 7 2.2034 14.7577 -0.0149 17 6 1.4073 15.8718 -0.0171 18 1 0.3323 15.7673 -0.0184 19 6 1.9818 17.1354 -0.0177 20 7 1.2166 18.2062 -0.0204 21 14 3.8410 17.3160 -0.0162 22 1 4.3349 17.3627 -1.4160 23 1 4.2158 18.5714 0.6829 24 1 4.4503 16.1578 0.6853 25 6 4.0209 2.5469 0.0010 26 9 5.3659 2.6741 0.0021 27 6 3.4333 1.2908 0.0016 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5140 0.8899 31 1 0.2152 2.3248 -0.0052 32 1 2.0649 6.0271 -0.0042 33 1 4.2538 7.5735 0.8862 34 1 4.2558 7.5717 -0.8937 35 1 1.9172 8.3970 -0.8966 36 1 1.9158 8.3985 0.8834 37 1 3.7856 10.0277 0.8827 38 1 3.7865 10.0257 -0.8972 39 1 1.4486 10.8507 -0.9004 40 1 1.4469 10.8530 0.8796 41 1 3.3161 12.4818 0.8800 42 1 3.3183 12.4798 -0.8999 43 1 0.9803 13.3048 -0.9045 44 1 0.9775 13.3070 0.8755 45 1 3.1689 14.8515 -0.0141 46 1 1.6181 19.0893 -0.0204 47 1 4.0394 0.3969 0.0033 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178646400.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:00 Heat of formation + Delta-G solvation = -85.302385 kcal Electronic energy + Delta-G solvation = -27140.485297 eV Core-core repulsion = 22852.249312 eV Total energy + Delta-G solvation = -4288.235985 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.53821 -41.51440 -40.01133 -38.59943 -36.89664 -35.54368 -34.07834 -33.11593 -32.01112 -31.29453 -30.23947 -28.44569 -27.27154 -25.36955 -24.25326 -23.49703 -22.06231 -21.49333 -20.85971 -20.79061 -19.31620 -18.71190 -18.29894 -17.44418 -17.00308 -16.90915 -16.37161 -16.17550 -16.09662 -15.67637 -15.29062 -15.27577 -14.56047 -14.44054 -14.19073 -14.02348 -13.85730 -13.79448 -13.35607 -13.21463 -12.99699 -12.85251 -12.66777 -12.39546 -12.34777 -11.78071 -11.61225 -11.42814 -10.98764 -10.88305 -10.81004 -10.76195 -10.41079 -10.33869 -10.27768 -10.18642 -10.04077 -9.54960 -9.50591 -9.23362 -8.84887 -7.18100 -5.73206 -3.08102 -0.14512 0.21777 2.10687 2.14466 2.62957 3.06641 3.38332 3.40918 3.44137 3.44483 3.48272 3.67977 4.01072 4.18356 4.23892 4.35148 4.53298 4.54880 4.63075 4.73609 4.73644 4.83063 4.92950 5.07772 5.18684 5.28850 5.35532 5.52133 5.55470 5.59476 5.60805 5.68756 5.83350 5.90625 6.05651 6.07528 6.15539 6.21227 6.24880 6.28463 6.41732 6.75985 6.82418 6.86594 7.14938 7.77851 8.04101 8.46318 9.26106 9.98779 10.19236 11.45423 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.026675 B = 0.001310 C = 0.001252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.438654 B =21362.834728 C =22365.316569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.301 6.301 3 C 0.134 3.866 4 C 0.010 3.990 5 N -0.392 5.392 6 C 0.004 3.996 7 C 0.571 3.429 8 O -0.523 6.523 9 N -0.709 5.709 10 C 0.116 3.884 11 C -0.131 4.131 12 C -0.116 4.116 13 C -0.113 4.113 14 C -0.131 4.131 15 C 0.156 3.844 16 N -0.759 5.759 17 C -0.244 4.244 18 H 0.089 0.911 19 C 0.003 3.997 20 N -0.936 5.936 21 Si 0.886 3.114 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.277 1.277 25 C 0.158 3.842 26 F -0.096 7.096 27 C -0.161 4.161 28 H 0.065 0.935 29 H 0.110 0.890 30 H 0.065 0.935 31 H 0.175 0.825 32 H 0.410 0.590 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.025 0.975 44 H 0.024 0.976 45 H 0.360 0.640 46 H 0.259 0.741 47 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.795 -44.201 0.051 44.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.212 6.212 3 C 0.085 3.915 4 C -0.153 4.153 5 N -0.103 5.103 6 C -0.135 4.135 7 C 0.355 3.645 8 O -0.398 6.398 9 N -0.360 5.360 10 C -0.007 4.007 11 C -0.169 4.169 12 C -0.154 4.154 13 C -0.152 4.152 14 C -0.169 4.169 15 C 0.029 3.971 16 N -0.404 5.404 17 C -0.374 4.374 18 H 0.107 0.893 19 C -0.193 4.193 20 N -0.584 5.584 21 Si 0.716 3.284 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.203 1.203 25 C 0.135 3.865 26 F -0.074 7.074 27 C -0.188 4.188 28 H 0.084 0.916 29 H 0.128 0.872 30 H 0.084 0.916 31 H 0.192 0.808 32 H 0.246 0.754 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.043 0.957 44 H 0.042 0.958 45 H 0.193 0.807 46 H 0.069 0.931 47 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -0.470 -43.367 0.051 43.370 hybrid contribution 1.226 -0.483 0.010 1.318 sum 0.756 -43.851 0.062 43.857 Atomic orbital electron populations 1.23315 0.76642 1.05311 1.02315 1.86087 1.22708 1.25315 1.87066 1.20037 0.92068 0.86225 0.93185 1.23085 1.01216 0.86341 1.04655 1.67456 1.09233 1.27020 1.06590 1.21231 0.89458 0.94008 1.08788 1.17493 0.86322 0.83155 0.77504 1.90883 1.13163 1.86266 1.49487 1.45813 1.10896 1.05474 1.73864 1.21528 0.96314 0.79987 1.02848 1.21827 0.97704 0.94323 1.03023 1.21517 0.98579 0.92728 1.02608 1.21491 0.97596 0.93872 1.02193 1.21781 0.99114 0.94109 1.01858 1.20640 0.93941 0.84142 0.98387 1.42751 1.04740 1.01756 1.91170 1.19095 0.91825 0.83704 1.42761 0.89275 1.24676 0.97238 0.95254 1.02128 1.69707 1.33698 0.97190 1.57827 0.86520 0.87123 0.76973 0.77781 1.21080 1.21721 1.20328 1.18231 0.78809 0.92740 0.96715 1.91666 1.27134 1.96397 1.92205 1.20862 0.92971 0.97851 1.07093 0.91624 0.87164 0.91610 0.80792 0.75362 0.91054 0.91044 0.91099 0.91096 0.91625 0.91622 0.91871 0.91886 0.92141 0.92137 0.95708 0.95757 0.80718 0.93110 0.81804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.01 9.82 101.05 0.99 1.00 16 2 O -0.30 -1.21 10.50 -18.88 -0.20 -1.41 16 3 C 0.13 0.69 6.72 -38.86 -0.26 0.43 16 4 C 0.01 0.05 10.21 -17.36 -0.18 -0.13 16 5 N -0.39 -2.88 9.52 -9.63 -0.09 -2.97 16 6 C 0.00 0.04 6.75 -82.97 -0.56 -0.52 16 7 C 0.57 6.38 7.80 -12.37 -0.10 6.29 16 8 O -0.52 -7.57 15.30 5.32 0.08 -7.49 16 9 N -0.71 -6.33 5.54 -61.28 -0.34 -6.67 16 10 C 0.12 1.03 5.67 -4.04 -0.02 1.01 16 11 C -0.13 -1.02 5.33 -26.73 -0.14 -1.17 16 12 C -0.12 -1.11 5.21 -26.73 -0.14 -1.25 16 13 C -0.11 -1.31 5.21 -26.73 -0.14 -1.45 16 14 C -0.13 -1.99 5.33 -26.73 -0.14 -2.13 16 15 C 0.16 3.10 6.26 -4.04 -0.03 3.07 16 16 N -0.76 -18.84 5.41 -59.91 -0.32 -19.16 16 17 C -0.24 -7.16 10.47 -15.06 -0.16 -7.32 16 18 H 0.09 2.78 8.06 -52.49 -0.42 2.36 16 19 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 20 N -0.94 -30.01 13.97 55.49 0.78 -29.24 16 21 Si 0.89 22.66 27.74 -169.99 -4.71 17.94 16 22 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 23 H -0.29 -7.49 7.11 56.52 0.40 -7.08 16 24 H -0.28 -6.69 6.52 56.52 0.37 -6.32 16 25 C 0.16 1.38 7.31 -38.86 -0.28 1.10 16 26 F -0.10 -1.03 15.54 2.25 0.03 -1.00 16 27 C -0.16 -0.99 10.10 -39.12 -0.40 -1.38 16 28 H 0.07 -0.04 7.67 -51.93 -0.40 -0.44 16 29 H 0.11 -0.12 8.14 -51.93 -0.42 -0.55 16 30 H 0.07 -0.04 7.68 -51.93 -0.40 -0.44 16 31 H 0.18 0.29 6.31 -52.49 -0.33 -0.04 16 32 H 0.41 2.93 7.79 -40.82 -0.32 2.61 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 43 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.36 8.69 5.53 -40.82 -0.23 8.46 16 46 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 47 H 0.16 0.68 8.06 -52.49 -0.42 0.26 16 LS Contribution 397.19 15.07 5.99 5.99 Total: -1.00 -36.45 397.19 -7.62 -44.07 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -7.18 Total: 2.41 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: -1.65 Total: -2.47 kcal Atomic # 7 Polarization: -58.06 SS G_CDS: 0.02 Total: -58.04 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: -0.12 Total: -8.90 kcal Atomic # 9 Polarization: -1.03 SS G_CDS: 0.03 Total: -1.00 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -4.71 Total: 17.94 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -36.45 -7.62 -44.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178646400.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.229 kcal (2) G-P(sol) polarization free energy of solvation -36.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds