Wall clock time and date at job start Tue Mar 31 2020 23:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35725 * 117.00549 * 2 1 4 4 C 1.39365 * 120.35692 * 359.97438 * 3 2 1 5 5 N 1.31290 * 120.87979 * 180.02562 * 4 3 2 6 6 C 1.32884 * 121.72051 * 359.97438 * 5 4 3 7 7 C 1.47757 * 119.69021 * 179.97438 * 6 5 4 8 8 O 1.21557 * 120.00330 * 179.97438 * 7 6 5 9 9 N 1.34782 * 119.99462 * 359.97438 * 7 6 5 10 10 C 1.46495 * 119.99464 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.47176 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47796 * 180.02562 * 11 10 9 13 13 C 1.52999 * 109.47796 * 179.97438 * 12 11 10 14 14 C 1.52999 * 109.47281 * 179.97438 * 13 12 11 15 15 C 1.53001 * 109.46921 * 179.97438 * 14 13 12 16 16 N 1.46501 * 109.47142 * 180.02562 * 15 14 13 17 17 C 1.36936 * 120.00152 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99702 * 359.97438 * 17 16 15 19 19 C 1.38807 * 120.00056 * 179.97438 * 17 16 15 20 20 N 1.31615 * 119.99957 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 119.99895 * 0.02562 * 19 17 16 22 22 H 1.48507 * 109.47003 * 90.00107 * 21 19 17 23 23 H 1.48499 * 109.46950 * 209.99584 * 21 19 17 24 24 H 1.48493 * 109.47189 * 330.00021 * 21 19 17 25 25 C 1.39723 * 120.62418 * 359.97438 * 6 5 4 26 26 F 1.35098 * 120.46204 * 180.02562 * 25 6 5 27 27 C 1.38682 * 119.06913 * 0.02562 * 25 6 5 28 28 H 1.09000 * 109.46669 * 60.00030 * 1 2 3 29 29 H 1.08994 * 109.47396 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47297 * 300.01012 * 1 2 3 31 31 H 1.08000 * 119.55513 * 359.74272 * 4 3 2 32 32 H 0.96994 * 120.00564 * 0.02562 * 9 7 6 33 33 H 1.09004 * 109.47668 * 300.00212 * 10 9 7 34 34 H 1.08994 * 109.47666 * 60.00479 * 10 9 7 35 35 H 1.09006 * 109.47151 * 300.00293 * 11 10 9 36 36 H 1.09004 * 109.47131 * 59.99904 * 11 10 9 37 37 H 1.09006 * 109.46758 * 300.00225 * 12 11 10 38 38 H 1.08996 * 109.47261 * 59.99309 * 12 11 10 39 39 H 1.09004 * 109.46650 * 300.00105 * 13 12 11 40 40 H 1.09002 * 109.46628 * 59.99478 * 13 12 11 41 41 H 1.08990 * 109.47484 * 299.99887 * 14 13 12 42 42 H 1.08999 * 109.46674 * 60.00213 * 14 13 12 43 43 H 1.09004 * 109.47157 * 300.00598 * 15 14 13 44 44 H 1.09004 * 109.46983 * 60.00309 * 15 14 13 45 45 H 0.97003 * 119.99909 * 0.02562 * 16 15 14 46 46 H 0.97004 * 119.99893 * 179.97438 * 20 19 17 47 47 H 1.07997 * 120.78892 * 180.02562 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 1.2936 2.3828 -0.0005 5 7 1.8791 3.5580 -0.0010 6 6 3.2024 3.6793 -0.0006 7 6 3.8140 5.0243 -0.0017 8 8 5.0238 5.1419 -0.0008 9 7 3.0303 6.1209 -0.0038 10 6 3.6367 7.4545 -0.0044 11 6 2.5347 8.5158 -0.0062 12 6 3.1678 9.9086 -0.0075 13 6 2.0659 10.9700 -0.0099 14 6 2.6991 12.3628 -0.0106 15 6 1.5971 13.4241 -0.0136 16 7 2.2034 14.7577 -0.0149 17 6 1.4073 15.8718 -0.0171 18 1 0.3323 15.7673 -0.0184 19 6 1.9818 17.1354 -0.0177 20 7 1.2166 18.2062 -0.0204 21 14 3.8410 17.3160 -0.0162 22 1 4.3349 17.3627 -1.4160 23 1 4.2158 18.5714 0.6829 24 1 4.4503 16.1578 0.6853 25 6 4.0209 2.5469 0.0010 26 9 5.3659 2.6741 0.0021 27 6 3.4333 1.2908 0.0016 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5140 0.8899 31 1 0.2152 2.3248 -0.0052 32 1 2.0649 6.0271 -0.0042 33 1 4.2538 7.5735 0.8862 34 1 4.2558 7.5717 -0.8937 35 1 1.9172 8.3970 -0.8966 36 1 1.9158 8.3985 0.8834 37 1 3.7856 10.0277 0.8827 38 1 3.7865 10.0257 -0.8972 39 1 1.4486 10.8507 -0.9004 40 1 1.4469 10.8530 0.8796 41 1 3.3161 12.4818 0.8800 42 1 3.3183 12.4798 -0.8999 43 1 0.9803 13.3048 -0.9045 44 1 0.9775 13.3070 0.8755 45 1 3.1689 14.8515 -0.0141 46 1 1.6181 19.0893 -0.0204 47 1 4.0394 0.3969 0.0033 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178646400.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:59 Heat of formation + Delta-G solvation = -111.673215 kcal Electronic energy + Delta-G solvation = -27141.628822 eV Core-core repulsion = 22852.249312 eV Total energy + Delta-G solvation = -4289.379510 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -50.21594 -41.98356 -40.68133 -39.05442 -37.97096 -36.86635 -35.37207 -33.82295 -33.46244 -32.21996 -31.41410 -28.77402 -28.28693 -26.16643 -25.32022 -24.26351 -23.40929 -22.27934 -22.22704 -21.63669 -19.73899 -19.61154 -19.28182 -18.82203 -17.49826 -17.41284 -17.03034 -16.95857 -16.63413 -16.62030 -16.23933 -16.19669 -15.81016 -15.60046 -15.40164 -14.89160 -14.84884 -14.41727 -14.40846 -14.15017 -14.00445 -13.92152 -13.48221 -13.33666 -13.03142 -12.95106 -12.68064 -12.52475 -12.47036 -12.07893 -11.90343 -11.85587 -11.80887 -11.62503 -11.39173 -11.32555 -10.97088 -10.90014 -10.77732 -10.24917 -9.72158 -9.30685 -8.04373 -5.38087 -0.69812 -0.24922 1.37603 1.41225 1.48869 1.48904 1.77808 1.99087 2.46059 2.47810 2.85417 2.93690 3.27042 3.30701 3.49790 3.59063 3.71139 3.89366 3.98051 4.02660 4.21489 4.24963 4.29757 4.38069 4.39779 4.42395 4.59767 4.61247 4.66943 4.77691 4.81987 4.84313 4.97139 4.99991 5.05374 5.09707 5.15133 5.28483 5.30699 5.39318 5.54194 5.56765 5.74182 5.94407 6.20281 6.20560 6.49663 7.03725 7.06909 7.83907 8.03228 9.17256 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.026675 B = 0.001310 C = 0.001252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.438654 B =21362.834728 C =22365.316569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.308 6.308 3 C 0.147 3.853 4 C 0.020 3.980 5 N -0.397 5.397 6 C -0.019 4.019 7 C 0.565 3.435 8 O -0.567 6.567 9 N -0.698 5.698 10 C 0.118 3.882 11 C -0.119 4.119 12 C -0.112 4.112 13 C -0.106 4.106 14 C -0.121 4.121 15 C 0.150 3.850 16 N -0.763 5.763 17 C -0.242 4.242 18 H 0.055 0.945 19 C -0.064 4.064 20 N -0.984 5.984 21 Si 0.959 3.041 22 H -0.277 1.277 23 H -0.293 1.293 24 H -0.252 1.252 25 C 0.138 3.862 26 F -0.116 7.116 27 C -0.162 4.162 28 H 0.080 0.920 29 H 0.126 0.874 30 H 0.080 0.920 31 H 0.212 0.788 32 H 0.420 0.580 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.061 0.939 42 H 0.063 0.937 43 H 0.023 0.977 44 H 0.022 0.978 45 H 0.366 0.634 46 H 0.259 0.741 47 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.204 -46.805 0.068 46.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 O -0.219 6.219 3 C 0.097 3.903 4 C -0.144 4.144 5 N -0.108 5.108 6 C -0.156 4.156 7 C 0.351 3.649 8 O -0.446 6.446 9 N -0.349 5.349 10 C -0.005 4.005 11 C -0.156 4.156 12 C -0.150 4.150 13 C -0.144 4.144 14 C -0.159 4.159 15 C 0.024 3.976 16 N -0.409 5.409 17 C -0.373 4.373 18 H 0.073 0.927 19 C -0.256 4.256 20 N -0.635 5.635 21 Si 0.785 3.215 22 H -0.203 1.203 23 H -0.220 1.220 24 H -0.176 1.176 25 C 0.115 3.885 26 F -0.094 7.094 27 C -0.188 4.188 28 H 0.098 0.902 29 H 0.144 0.856 30 H 0.098 0.902 31 H 0.228 0.772 32 H 0.258 0.742 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.041 0.959 44 H 0.040 0.960 45 H 0.199 0.801 46 H 0.067 0.933 47 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -0.908 -46.022 0.069 46.031 hybrid contribution 1.092 0.171 0.001 1.105 sum 0.183 -45.851 0.070 45.851 Atomic orbital electron populations 1.23695 0.74468 1.06971 1.03735 1.86105 1.24909 1.24529 1.86329 1.20064 0.91711 0.86934 0.91614 1.23690 1.02756 0.85420 1.02519 1.67460 1.08126 1.28227 1.07025 1.20964 0.90398 0.93085 1.11186 1.17859 0.85974 0.84319 0.76777 1.90844 1.14978 1.87029 1.51778 1.45753 1.11273 1.05076 1.72798 1.21483 0.96636 0.80344 1.02055 1.21705 0.97192 0.92723 1.04016 1.21445 0.97941 0.92902 1.02729 1.21425 0.98096 0.92117 1.02787 1.21699 0.97606 0.94472 1.02076 1.20873 0.95536 0.83270 0.97946 1.42806 1.04737 1.02331 1.91015 1.19097 0.90962 0.85533 1.41674 0.92708 1.25556 1.02873 0.94752 1.02403 1.69892 1.36189 0.97788 1.59585 0.85353 0.80371 0.77509 0.78225 1.20258 1.21975 1.17645 1.18458 0.78091 0.93766 0.98147 1.91606 1.28601 1.96583 1.92652 1.21014 0.93902 0.97309 1.06583 0.90159 0.85602 0.90152 0.77194 0.74201 0.91927 0.91907 0.90087 0.90098 0.91602 0.91567 0.91299 0.91351 0.91981 0.91857 0.95935 0.96036 0.80093 0.93253 0.80297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.01 9.82 113.37 1.11 1.10 16 2 O -0.31 -1.61 10.50 -90.47 -0.95 -2.56 16 3 C 0.15 1.18 6.72 22.74 0.15 1.34 16 4 C 0.02 0.14 10.21 85.05 0.87 1.01 16 5 N -0.40 -5.25 9.52 -184.39 -1.76 -7.00 16 6 C -0.02 -0.35 6.75 41.86 0.28 -0.07 16 7 C 0.57 13.01 7.80 86.76 0.68 13.69 16 8 O -0.57 -17.39 15.30 -3.89 -0.06 -17.45 16 9 N -0.70 -12.14 5.54 -466.07 -2.58 -14.73 16 10 C 0.12 2.02 5.67 86.38 0.49 2.51 16 11 C -0.12 -1.60 5.33 30.59 0.16 -1.44 16 12 C -0.11 -1.88 5.21 30.59 0.16 -1.72 16 13 C -0.11 -2.20 5.21 30.59 0.16 -2.04 16 14 C -0.12 -3.41 5.33 30.59 0.16 -3.25 16 15 C 0.15 5.78 6.26 86.38 0.54 6.32 16 16 N -0.76 -37.18 5.41 -343.44 -1.86 -39.04 16 17 C -0.24 -14.35 10.47 84.03 0.88 -13.47 16 18 H 0.05 3.55 8.06 -2.91 -0.02 3.52 16 19 C -0.06 -3.90 5.50 84.86 0.47 -3.43 16 20 N -0.98 -64.36 13.97 21.65 0.30 -64.05 16 21 Si 0.96 46.44 27.74 68.60 1.90 48.34 16 22 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 23 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 24 H -0.25 -11.04 6.52 99.48 0.65 -10.39 16 25 C 0.14 2.49 7.31 22.74 0.17 2.66 16 26 F -0.12 -2.69 15.54 44.97 0.70 -1.99 16 27 C -0.16 -1.85 10.10 22.57 0.23 -1.62 16 28 H 0.08 -0.42 7.67 -2.39 -0.02 -0.44 16 29 H 0.13 -0.71 8.14 -2.39 -0.02 -0.73 16 30 H 0.08 -0.42 7.68 -2.39 -0.02 -0.44 16 31 H 0.21 -0.19 6.31 -2.91 -0.02 -0.21 16 32 H 0.42 5.46 7.79 -92.71 -0.72 4.74 16 33 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 34 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 36 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 37 H 0.07 1.12 8.14 -2.38 -0.02 1.11 16 38 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 40 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.02 0.89 8.14 -2.38 -0.02 0.87 16 44 H 0.02 0.85 8.14 -2.38 -0.02 0.83 16 45 H 0.37 16.87 5.53 -92.71 -0.51 16.35 16 46 H 0.26 16.03 8.31 -92.70 -0.77 15.26 16 47 H 0.18 1.34 8.06 -2.91 -0.02 1.31 16 Total: -1.00 -81.34 397.19 1.91 -79.43 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: -0.30 Total: 17.46 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: 6.51 Total: 1.59 kcal Atomic # 7 Polarization: -118.93 SS G_CDS: -5.89 Total: -124.83 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: -1.01 Total: -20.01 kcal Atomic # 9 Polarization: -2.69 SS G_CDS: 0.70 Total: -1.99 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 1.90 Total: 48.34 kcal Total: -81.34 1.91 -79.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178646400.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.240 kcal (2) G-P(sol) polarization free energy of solvation -81.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds