Wall clock time and date at job start Tue Mar 31 2020 23:41:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31617 * 1
3 3 Si 1.86805 * 120.00032 * 2 1
4 4 H 1.48497 * 109.46842 * 239.99587 * 3 2 1
5 5 H 1.48497 * 109.47127 * 359.97438 * 3 2 1
6 6 H 1.48506 * 109.46951 * 119.99767 * 3 2 1
7 7 C 1.38811 * 120.00351 * 179.97438 * 2 1 3
8 8 H 1.07999 * 120.00425 * 180.02562 * 7 2 1
9 9 N 1.36940 * 119.99446 * 0.02562 * 7 2 1
10 10 C 1.46500 * 119.99808 * 179.97438 * 9 7 2
11 11 C 1.50701 * 109.47106 * 179.97438 * 10 9 7
12 12 C 1.35356 * 126.75243 * 95.00124 * 11 10 9
13 13 N 1.35307 * 106.17491 * 180.02562 * 12 11 10
14 14 C 1.46505 * 125.86599 * 180.02562 * 13 12 11
15 15 H 1.09002 * 109.49846 * 154.99810 * 14 13 12
16 16 C 1.53039 * 109.49552 * 34.93428 * 14 13 12
17 17 C 1.53049 * 109.53353 * 178.65166 * 16 14 13
18 18 C 1.53187 * 109.31497 * 61.36666 * 17 16 14
19 19 N 1.46931 * 108.77274 * 305.36469 * 18 17 16
20 20 C 1.34780 * 120.62702 * 233.58083 * 19 18 17
21 21 O 1.21281 * 119.99932 * 179.97438 * 20 19 18
22 22 C 1.50700 * 119.99912 * 0.02562 * 20 19 18
23 23 C 1.53001 * 109.46939 * 179.97438 * 22 20 19
24 24 C 1.52996 * 109.47205 * 179.97438 * 23 22 20
25 25 F 1.39903 * 109.47296 * 180.02562 * 24 23 22
26 26 C 1.46925 * 118.74018 * 53.60848 * 19 18 17
27 27 N 1.28710 * 108.26660 * 0.26271 * 13 12 11
28 28 N 1.28635 * 110.17601 * 359.55833 * 27 13 12
29 29 H 0.97000 * 119.99875 * 0.02562 * 1 2 3
30 30 H 0.97000 * 120.00131 * 359.97438 * 9 7 2
31 31 H 1.09001 * 109.47295 * 60.00015 * 10 9 7
32 32 H 1.09003 * 109.47198 * 299.99677 * 10 9 7
33 33 H 1.08003 * 126.90977 * 359.97438 * 12 11 10
34 34 H 1.08998 * 109.46238 * 298.67019 * 16 14 13
35 35 H 1.08995 * 109.46216 * 58.64870 * 16 14 13
36 36 H 1.09006 * 109.49335 * 181.31393 * 17 16 14
37 37 H 1.08993 * 109.49783 * 301.37968 * 17 16 14
38 38 H 1.09002 * 109.58909 * 65.14881 * 18 17 16
39 39 H 1.08993 * 109.58933 * 185.43112 * 18 17 16
40 40 H 1.08997 * 109.46970 * 299.98784 * 22 20 19
41 41 H 1.08998 * 109.47438 * 59.99401 * 22 20 19
42 42 H 1.09001 * 109.46981 * 299.99901 * 23 22 20
43 43 H 1.09005 * 109.47301 * 59.99425 * 23 22 20
44 44 H 1.09001 * 109.47222 * 299.99939 * 24 23 22
45 45 H 1.08998 * 109.47153 * 59.99934 * 24 23 22
46 46 H 1.09005 * 109.58300 * 186.60199 * 26 19 18
47 47 H 1.08998 * 109.58651 * 66.18140 * 26 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 3.1040 1.6963 -1.2124
5 1 1.2852 2.7465 -0.0006
6 1 3.1039 1.6964 1.2126
7 6 2.0103 -1.2021 0.0005
8 1 3.0903 -1.2021 0.0010
9 7 1.3256 -2.3880 0.0005
10 6 2.0581 -3.6567 0.0005
11 6 1.0787 -4.8022 0.0012
12 6 0.6239 -5.4795 -1.0789
13 7 -0.2311 -6.4149 -0.6046
14 6 -0.9708 -7.3891 -1.4108
15 1 -1.2119 -8.2589 -0.7997
16 6 -0.1130 -7.8233 -2.6015
17 6 -0.8717 -8.8661 -3.4256
18 6 -2.1648 -8.2446 -3.9625
19 7 -2.9289 -7.6944 -2.8345
20 6 -4.2145 -8.0484 -2.6384
21 8 -4.8344 -7.5877 -1.7033
22 6 -4.8814 -9.0174 -3.5803
23 6 -6.3272 -9.2477 -3.1358
24 6 -7.0044 -10.2310 -4.0924
25 9 -8.3266 -10.4412 -3.6863
26 6 -2.2651 -6.7508 -1.9248
27 7 -0.2865 -6.2984 0.6760
28 7 0.4876 -5.3493 1.0692
29 1 -0.4850 0.8401 -0.0004
30 1 0.3556 -2.3880 0.0005
31 1 2.6847 -3.7145 0.8905
32 1 2.6847 -3.7145 -0.8895
33 1 0.8893 -5.3072 -2.1115
34 1 0.1070 -6.9572 -3.2256
35 1 0.8194 -8.2558 -2.2388
36 1 -0.2509 -9.1920 -4.2602
37 1 -1.1132 -9.7221 -2.7957
38 1 -1.9227 -7.4460 -4.6639
39 1 -2.7550 -9.0086 -4.4684
40 1 -4.8725 -8.6070 -4.5901
41 1 -4.3426 -9.9649 -3.5684
42 1 -6.3358 -9.6582 -2.1261
43 1 -6.8662 -8.3003 -3.1474
44 1 -6.9958 -9.8201 -5.1020
45 1 -6.4656 -11.1784 -4.0812
46 1 -2.9227 -6.5299 -1.0840
47 1 -2.0312 -5.8305 -2.4600
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001185983505.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 23:41:04
Heat of formation + Delta-G solvation = 20.381717 kcal
Electronic energy + Delta-G solvation = -28958.415171 eV
Core-core repulsion = 24707.054743 eV
Total energy + Delta-G solvation = -4251.360427 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 339.181 amu
Computer time = 0.76 seconds
Orbital eigenvalues (eV)
-48.03120 -43.04227 -40.75135 -38.24073 -35.26139 -34.67354 -34.32075 -32.79607
-31.83416 -30.52238 -29.88029 -28.07362 -26.06098 -25.61696 -24.47609 -22.93336
-22.64244 -22.21773 -20.75197 -20.62370 -19.42426 -17.98186 -17.36397 -17.07061
-16.80502 -16.77364 -16.25267 -15.83475 -15.65457 -15.26068 -14.98054 -14.73386
-14.64338 -14.52535 -14.15324 -13.87391 -13.68470 -13.40668 -13.23971 -13.11953
-12.70392 -12.54253 -12.29493 -12.05675 -11.92323 -11.72765 -11.69109 -11.53685
-11.35224 -11.21055 -11.16607 -10.87385 -10.78057 -10.43624 -10.29428 -10.11712
-9.95245 -9.71923 -9.21684 -8.86663 -8.81826 -6.90027 -5.71770 -3.01687
1.76447 2.08286 2.16471 2.64531 2.92778 3.47301 3.51678 3.53091
3.74425 3.90074 4.08242 4.11428 4.18008 4.22644 4.27248 4.46860
4.54631 4.56108 4.63375 4.63807 4.68135 4.75315 4.84108 4.91645
5.06863 5.08581 5.14973 5.20181 5.29723 5.32298 5.40956 5.46250
5.50405 5.56668 5.64949 5.71039 5.83181 5.88132 6.19300 6.41494
6.66361 6.75565 6.80625 6.81336 7.66965 7.72156 8.45289 8.85426
9.56894 10.12803 10.48701 11.50821
Molecular weight = 339.18amu
Principal moments of inertia in cm(-1)
A = 0.015554 B = 0.002054 C = 0.001927
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1799.798785 B =13628.734669 C =14528.968815
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.932 5.932
2 C -0.013 4.013
3 Si 0.910 3.090
4 H -0.286 1.286
5 H -0.292 1.292
6 H -0.285 1.285
7 C -0.241 4.241
8 H 0.073 0.927
9 N -0.726 5.726
10 C 0.233 3.767
11 C -0.004 4.004
12 C -0.044 4.044
13 N -0.295 5.295
14 C 0.138 3.862
15 H 0.113 0.887
16 C -0.132 4.132
17 C -0.130 4.130
18 C 0.100 3.900
19 N -0.612 5.612
20 C 0.516 3.484
21 O -0.527 6.527
22 C -0.136 4.136
23 C -0.142 4.142
24 C 0.063 3.937
25 F -0.217 7.217
26 C 0.103 3.897
27 N -0.093 5.093
28 N -0.252 5.252
29 H 0.256 0.744
30 H 0.385 0.615
31 H 0.039 0.961
32 H 0.037 0.963
33 H 0.187 0.813
34 H 0.083 0.917
35 H 0.083 0.917
36 H 0.091 0.909
37 H 0.074 0.926
38 H 0.078 0.922
39 H 0.093 0.907
40 H 0.099 0.901
41 H 0.099 0.901
42 H 0.084 0.916
43 H 0.084 0.916
44 H 0.075 0.925
45 H 0.075 0.925
46 H 0.107 0.893
47 H 0.082 0.918
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.759 -26.875 -16.422 32.212
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.580 5.580
2 C -0.209 4.209
3 Si 0.741 3.259
4 H -0.213 1.213
5 H -0.217 1.217
6 H -0.212 1.212
7 C -0.372 4.372
8 H 0.091 0.909
9 N -0.370 5.370
10 C 0.104 3.896
11 C -0.141 4.141
12 C -0.194 4.194
13 N -0.090 5.090
14 C 0.035 3.965
15 H 0.131 0.869
16 C -0.171 4.171
17 C -0.168 4.168
18 C -0.022 4.022
19 N -0.347 5.347
20 C 0.304 3.696
21 O -0.402 6.402
22 C -0.176 4.176
23 C -0.180 4.180
24 C 0.008 3.992
25 F -0.198 7.198
26 C -0.021 4.021
27 N -0.072 5.072
28 N -0.120 5.120
29 H 0.066 0.934
30 H 0.219 0.781
31 H 0.057 0.943
32 H 0.055 0.945
33 H 0.204 0.796
34 H 0.102 0.898
35 H 0.102 0.898
36 H 0.109 0.891
37 H 0.093 0.907
38 H 0.096 0.904
39 H 0.111 0.889
40 H 0.118 0.882
41 H 0.117 0.883
42 H 0.102 0.898
43 H 0.103 0.897
44 H 0.093 0.907
45 H 0.093 0.907
46 H 0.125 0.875
47 H 0.101 0.899
Dipole moment (debyes) X Y Z Total
from point charges -7.645 -27.059 -14.590 31.678
hybrid contribution 0.601 1.311 -1.092 1.809
sum -7.044 -25.748 -15.681 30.959
Atomic orbital electron populations
1.69673 1.05167 1.25774 1.57383 1.24768 0.95523 0.97729 1.02914
0.86231 0.78456 0.83409 0.77843 1.21268 1.21746 1.21176 1.19182
0.91052 0.83832 1.43118 0.90937 1.42301 1.05981 0.99230 1.89531
1.18945 0.90057 0.81412 0.99229 1.22483 1.02643 1.00617 0.88407
1.23300 0.99190 0.94949 1.01969 1.47237 1.30440 1.24690 1.06599
1.21834 0.91633 0.90755 0.92300 0.86892 1.21954 0.98926 1.00602
0.95589 1.21901 0.96192 0.98141 1.00607 1.21906 0.92961 0.99102
0.88280 1.48027 1.11658 1.46155 1.28857 1.20669 0.81055 0.81984
0.85898 1.90779 1.63137 1.54681 1.31634 1.21578 0.96541 0.99661
0.99818 1.21956 0.94203 1.01235 1.00637 1.21980 0.78304 1.00288
0.98647 1.92787 1.38154 1.96359 1.92508 1.21897 0.92916 0.91773
0.95559 1.78313 1.19378 1.17155 0.92320 1.75112 1.06366 1.04199
1.26281 0.93448 0.78093 0.94345 0.94521 0.79632 0.89831 0.89832
0.89076 0.90707 0.90369 0.88894 0.88241 0.88281 0.89766 0.89728
0.90681 0.90713 0.87477 0.89945
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -29.01 13.06 55.49 0.72 -28.28 16
2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16
3 Si 0.91 22.67 29.55 -169.99 -5.02 17.64 16
4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16
5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16
6 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16
7 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16
8 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16
9 N -0.73 -19.16 5.59 -61.08 -0.34 -19.50 16
10 C 0.23 4.92 6.82 -5.19 -0.04 4.89 16
11 C 0.00 -0.07 6.62 -82.78 -0.55 -0.62 16
12 C -0.04 -0.65 10.62 -17.05 -0.18 -0.83 16
13 N -0.30 -4.16 3.26 -54.64 -0.18 -4.34 16
14 C 0.14 1.31 3.27 -67.81 -0.22 1.09 16
15 H 0.11 1.07 8.14 -51.93 -0.42 0.64 16
16 C -0.13 -0.76 4.77 -26.69 -0.13 -0.89 16
17 C -0.13 -0.38 6.08 -26.61 -0.16 -0.55 16
18 C 0.10 0.32 6.34 -3.71 -0.02 0.30 16
19 N -0.61 -4.47 2.97 -172.77 -0.51 -4.99 16
20 C 0.52 4.53 7.70 -10.98 -0.08 4.44 16
21 O -0.53 -7.30 15.39 5.56 0.09 -7.22 16
22 C -0.14 -0.57 4.05 -27.88 -0.11 -0.68 16
23 C -0.14 -0.86 4.96 -26.73 -0.13 -0.99 16
24 C 0.06 0.28 7.55 37.16 0.28 0.56 16
25 F -0.22 -1.84 17.36 2.25 0.04 -1.80 16
26 C 0.10 1.04 6.04 -3.71 -0.02 1.02 16
27 N -0.09 -1.70 13.16 60.35 0.79 -0.91 16
28 N -0.25 -5.26 12.41 33.29 0.41 -4.85 16
29 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16
30 H 0.39 11.02 7.66 -40.82 -0.31 10.71 16
31 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16
32 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16
33 H 0.19 2.09 7.34 -52.48 -0.39 1.71 16
34 H 0.08 0.45 7.24 -51.93 -0.38 0.08 16
35 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16
36 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16
37 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16
38 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16
39 H 0.09 0.06 5.95 -51.93 -0.31 -0.25 16
40 H 0.10 0.20 7.94 -51.93 -0.41 -0.22 16
41 H 0.10 0.16 7.70 -51.93 -0.40 -0.24 16
42 H 0.08 0.64 8.10 -51.93 -0.42 0.22 16
43 H 0.08 0.66 8.10 -51.93 -0.42 0.24 16
44 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16
45 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16
46 H 0.11 1.45 7.01 -51.93 -0.36 1.08 16
47 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16
LS Contribution 388.98 15.07 5.86 5.86
Total: -1.00 -38.33 388.98 -6.93 -45.26
By element:
Atomic # 1 Polarization: 10.04 SS G_CDS: -7.17 Total: 2.87 kcal
Atomic # 6 Polarization: 1.88 SS G_CDS: -1.62 Total: 0.26 kcal
Atomic # 7 Polarization: -63.77 SS G_CDS: 0.90 Total: -62.87 kcal
Atomic # 8 Polarization: -7.30 SS G_CDS: 0.09 Total: -7.22 kcal
Atomic # 9 Polarization: -1.84 SS G_CDS: 0.04 Total: -1.80 kcal
Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.64 kcal
Total LS contribution 5.86 Total: 5.86 kcal
Total: -38.33 -6.93 -45.26 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001185983505.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 65.642 kcal
(2) G-P(sol) polarization free energy of solvation -38.332 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.310 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.929 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.261 kcal
(6) G-S(sol) free energy of system = (1) + (5) 20.382 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds