Wall clock time and date at job start Tue Mar 31 2020 23:41:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31617 * 1
3 3 Si 1.86805 * 120.00032 * 2 1
4 4 H 1.48497 * 109.46842 * 239.99587 * 3 2 1
5 5 H 1.48497 * 109.47127 * 359.97438 * 3 2 1
6 6 H 1.48506 * 109.46951 * 119.99767 * 3 2 1
7 7 C 1.38811 * 120.00351 * 179.97438 * 2 1 3
8 8 H 1.07999 * 120.00425 * 180.02562 * 7 2 1
9 9 N 1.36940 * 119.99446 * 0.02562 * 7 2 1
10 10 C 1.46500 * 119.99808 * 179.97438 * 9 7 2
11 11 C 1.50701 * 109.47106 * 179.97438 * 10 9 7
12 12 C 1.35356 * 126.75243 * 95.00124 * 11 10 9
13 13 N 1.35307 * 106.17491 * 180.02562 * 12 11 10
14 14 C 1.46505 * 125.86599 * 180.02562 * 13 12 11
15 15 H 1.09002 * 109.49846 * 154.99810 * 14 13 12
16 16 C 1.53039 * 109.49552 * 34.93428 * 14 13 12
17 17 C 1.53049 * 109.53353 * 178.65166 * 16 14 13
18 18 C 1.53187 * 109.31497 * 61.36666 * 17 16 14
19 19 N 1.46931 * 108.77274 * 305.36469 * 18 17 16
20 20 C 1.34780 * 120.62702 * 233.58083 * 19 18 17
21 21 O 1.21281 * 119.99932 * 179.97438 * 20 19 18
22 22 C 1.50700 * 119.99912 * 0.02562 * 20 19 18
23 23 C 1.53001 * 109.46939 * 179.97438 * 22 20 19
24 24 C 1.52996 * 109.47205 * 179.97438 * 23 22 20
25 25 F 1.39903 * 109.47296 * 180.02562 * 24 23 22
26 26 C 1.46925 * 118.74018 * 53.60848 * 19 18 17
27 27 N 1.28710 * 108.26660 * 0.26271 * 13 12 11
28 28 N 1.28635 * 110.17601 * 359.55833 * 27 13 12
29 29 H 0.97000 * 119.99875 * 0.02562 * 1 2 3
30 30 H 0.97000 * 120.00131 * 359.97438 * 9 7 2
31 31 H 1.09001 * 109.47295 * 60.00015 * 10 9 7
32 32 H 1.09003 * 109.47198 * 299.99677 * 10 9 7
33 33 H 1.08003 * 126.90977 * 359.97438 * 12 11 10
34 34 H 1.08998 * 109.46238 * 298.67019 * 16 14 13
35 35 H 1.08995 * 109.46216 * 58.64870 * 16 14 13
36 36 H 1.09006 * 109.49335 * 181.31393 * 17 16 14
37 37 H 1.08993 * 109.49783 * 301.37968 * 17 16 14
38 38 H 1.09002 * 109.58909 * 65.14881 * 18 17 16
39 39 H 1.08993 * 109.58933 * 185.43112 * 18 17 16
40 40 H 1.08997 * 109.46970 * 299.98784 * 22 20 19
41 41 H 1.08998 * 109.47438 * 59.99401 * 22 20 19
42 42 H 1.09001 * 109.46981 * 299.99901 * 23 22 20
43 43 H 1.09005 * 109.47301 * 59.99425 * 23 22 20
44 44 H 1.09001 * 109.47222 * 299.99939 * 24 23 22
45 45 H 1.08998 * 109.47153 * 59.99934 * 24 23 22
46 46 H 1.09005 * 109.58300 * 186.60199 * 26 19 18
47 47 H 1.08998 * 109.58651 * 66.18140 * 26 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 3.1040 1.6963 -1.2124
5 1 1.2852 2.7465 -0.0006
6 1 3.1039 1.6964 1.2126
7 6 2.0103 -1.2021 0.0005
8 1 3.0903 -1.2021 0.0010
9 7 1.3256 -2.3880 0.0005
10 6 2.0581 -3.6567 0.0005
11 6 1.0787 -4.8022 0.0012
12 6 0.6239 -5.4795 -1.0789
13 7 -0.2311 -6.4149 -0.6046
14 6 -0.9708 -7.3891 -1.4108
15 1 -1.2119 -8.2589 -0.7997
16 6 -0.1130 -7.8233 -2.6015
17 6 -0.8717 -8.8661 -3.4256
18 6 -2.1648 -8.2446 -3.9625
19 7 -2.9289 -7.6944 -2.8345
20 6 -4.2145 -8.0484 -2.6384
21 8 -4.8344 -7.5877 -1.7033
22 6 -4.8814 -9.0174 -3.5803
23 6 -6.3272 -9.2477 -3.1358
24 6 -7.0044 -10.2310 -4.0924
25 9 -8.3266 -10.4412 -3.6863
26 6 -2.2651 -6.7508 -1.9248
27 7 -0.2865 -6.2984 0.6760
28 7 0.4876 -5.3493 1.0692
29 1 -0.4850 0.8401 -0.0004
30 1 0.3556 -2.3880 0.0005
31 1 2.6847 -3.7145 0.8905
32 1 2.6847 -3.7145 -0.8895
33 1 0.8893 -5.3072 -2.1115
34 1 0.1070 -6.9572 -3.2256
35 1 0.8194 -8.2558 -2.2388
36 1 -0.2509 -9.1920 -4.2602
37 1 -1.1132 -9.7221 -2.7957
38 1 -1.9227 -7.4460 -4.6639
39 1 -2.7550 -9.0086 -4.4684
40 1 -4.8725 -8.6070 -4.5901
41 1 -4.3426 -9.9649 -3.5684
42 1 -6.3358 -9.6582 -2.1261
43 1 -6.8662 -8.3003 -3.1474
44 1 -6.9958 -9.8201 -5.1020
45 1 -6.4656 -11.1784 -4.0812
46 1 -2.9227 -6.5299 -1.0840
47 1 -2.0312 -5.8305 -2.4600
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001185983505.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 23:41:04
Heat of formation + Delta-G solvation = -7.904955 kcal
Electronic energy + Delta-G solvation = -28959.641773 eV
Core-core repulsion = 24707.054743 eV
Total energy + Delta-G solvation = -4252.587030 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 339.181 amu
Computer time = 0.86 seconds
Orbital eigenvalues (eV)
-48.53856 -44.34289 -41.40243 -38.95213 -36.85860 -35.71919 -35.01231 -33.84193
-33.22237 -31.64737 -31.37997 -28.55987 -27.70728 -26.28251 -25.31217 -24.79578
-23.28610 -22.95863 -22.08848 -21.51049 -19.98641 -19.36636 -18.64941 -17.87490
-17.67433 -17.43065 -17.05152 -16.65376 -16.43124 -16.24994 -15.98827 -15.81106
-15.53981 -15.52648 -15.09278 -15.05918 -14.74537 -14.44151 -14.30007 -14.00417
-13.89907 -13.61004 -13.12010 -12.99829 -12.76667 -12.72658 -12.58515 -12.42653
-12.29086 -12.14007 -12.09311 -12.00069 -11.89241 -11.82615 -11.73401 -11.53608
-11.21962 -10.95294 -10.93570 -10.26308 -9.83793 -9.02773 -7.93328 -5.24260
0.54659 1.17839 1.43122 1.50469 1.52194 1.53818 1.59861 1.93726
2.59477 3.13232 3.28211 3.37966 3.44989 3.51049 3.67180 3.72345
3.87931 3.89259 3.95817 4.00007 4.07660 4.18511 4.21701 4.23943
4.31056 4.42103 4.44477 4.50498 4.56595 4.63224 4.68791 4.74361
4.77600 4.85947 4.96781 4.99031 5.02119 5.11496 5.17473 5.25132
5.27779 5.33546 5.50528 5.65565 6.25631 6.25978 7.04871 7.32293
7.48283 8.03812 8.29666 9.30422
Molecular weight = 339.18amu
Principal moments of inertia in cm(-1)
A = 0.015554 B = 0.002054 C = 0.001927
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1799.798785 B =13628.734669 C =14528.968815
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.975 5.975
2 C -0.080 4.080
3 Si 0.981 3.019
4 H -0.269 1.269
5 H -0.299 1.299
6 H -0.279 1.279
7 C -0.244 4.244
8 H 0.087 0.913
9 N -0.740 5.740
10 C 0.236 3.764
11 C -0.038 4.038
12 C -0.013 4.013
13 N -0.280 5.280
14 C 0.135 3.865
15 H 0.110 0.890
16 C -0.127 4.127
17 C -0.122 4.122
18 C 0.091 3.909
19 N -0.606 5.606
20 C 0.504 3.496
21 O -0.594 6.594
22 C -0.123 4.123
23 C -0.142 4.142
24 C 0.060 3.940
25 F -0.244 7.244
26 C 0.107 3.893
27 N -0.120 5.120
28 N -0.298 5.298
29 H 0.250 0.750
30 H 0.369 0.631
31 H 0.028 0.972
32 H 0.067 0.933
33 H 0.230 0.770
34 H 0.094 0.906
35 H 0.087 0.913
36 H 0.124 0.876
37 H 0.077 0.923
38 H 0.091 0.909
39 H 0.131 0.869
40 H 0.135 0.865
41 H 0.139 0.861
42 H 0.057 0.943
43 H 0.055 0.945
44 H 0.102 0.898
45 H 0.104 0.896
46 H 0.060 0.940
47 H 0.079 0.921
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.878 -29.082 -20.514 35.922
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.625 5.625
2 C -0.272 4.272
3 Si 0.809 3.191
4 H -0.195 1.195
5 H -0.226 1.226
6 H -0.205 1.205
7 C -0.375 4.375
8 H 0.104 0.896
9 N -0.382 5.382
10 C 0.108 3.892
11 C -0.176 4.176
12 C -0.165 4.165
13 N -0.074 5.074
14 C 0.033 3.967
15 H 0.128 0.872
16 C -0.166 4.166
17 C -0.160 4.160
18 C -0.029 4.029
19 N -0.339 5.339
20 C 0.295 3.705
21 O -0.474 6.474
22 C -0.162 4.162
23 C -0.181 4.181
24 C 0.006 3.994
25 F -0.225 7.225
26 C -0.018 4.018
27 N -0.098 5.098
28 N -0.165 5.165
29 H 0.059 0.941
30 H 0.200 0.800
31 H 0.046 0.954
32 H 0.085 0.915
33 H 0.246 0.754
34 H 0.113 0.887
35 H 0.106 0.894
36 H 0.142 0.858
37 H 0.096 0.904
38 H 0.109 0.891
39 H 0.149 0.851
40 H 0.153 0.847
41 H 0.157 0.843
42 H 0.076 0.924
43 H 0.074 0.926
44 H 0.120 0.880
45 H 0.122 0.878
46 H 0.079 0.921
47 H 0.097 0.903
Dipole moment (debyes) X Y Z Total
from point charges -5.708 -29.345 -18.714 35.269
hybrid contribution 0.008 1.876 0.147 1.881
sum -5.701 -27.469 -18.567 33.642
Atomic orbital electron populations
1.69864 1.06987 1.26136 1.59544 1.25688 0.96382 1.01512 1.03624
0.85100 0.77026 0.78491 0.78443 1.19482 1.22564 1.20512 1.19684
0.91853 0.84730 1.41229 0.89556 1.42526 1.05421 1.00758 1.89543
1.18991 0.90289 0.80105 0.99800 1.22364 1.04089 1.01513 0.89667
1.23752 0.97033 0.93024 1.02645 1.47629 1.29421 1.24542 1.05775
1.22279 0.91871 0.89287 0.93269 0.87162 1.22060 0.98564 1.01997
0.93979 1.21942 0.95982 0.96962 1.01118 1.22359 0.93206 1.00483
0.86853 1.48176 1.11526 1.45084 1.29111 1.21664 0.81172 0.81933
0.85703 1.90759 1.64766 1.57246 1.34670 1.21643 0.94698 1.00129
0.99718 1.21901 0.95798 1.00244 1.00143 1.22247 0.76799 1.01327
0.99068 1.92734 1.40389 1.96512 1.92870 1.21587 0.92518 0.92854
0.94884 1.78211 1.19761 1.17325 0.94529 1.75033 1.07754 1.05570
1.28148 0.94135 0.79989 0.95389 0.91482 0.75410 0.88748 0.89432
0.85764 0.90429 0.89107 0.85126 0.84687 0.84339 0.92364 0.92608
0.87972 0.87756 0.92091 0.90298
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.97 -62.23 13.06 21.65 0.28 -61.94 16
2 C -0.08 -4.74 5.50 84.86 0.47 -4.27 16
3 Si 0.98 46.85 29.55 68.60 2.03 48.88 16
4 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16
5 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16
6 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16
7 C -0.24 -13.85 9.99 84.03 0.84 -13.01 16
8 H 0.09 4.56 7.83 -2.91 -0.02 4.54 16
9 N -0.74 -39.62 5.59 -347.17 -1.94 -41.56 16
10 C 0.24 9.95 6.82 85.63 0.58 10.54 16
11 C -0.04 -1.45 6.62 41.60 0.28 -1.18 16
12 C -0.01 -0.36 10.62 83.49 0.89 0.52 16
13 N -0.28 -7.82 3.26 -326.79 -1.06 -8.88 16
14 C 0.13 2.42 3.27 45.07 0.15 2.56 16
15 H 0.11 2.05 8.14 -2.39 -0.02 2.04 16
16 C -0.13 -1.00 4.77 30.62 0.15 -0.85 16
17 C -0.12 -0.10 6.08 30.67 0.19 0.09 16
18 C 0.09 0.14 6.34 86.36 0.55 0.69 16
19 N -0.61 -7.79 2.97 -818.91 -2.43 -10.23 16
20 C 0.50 8.55 7.70 87.66 0.67 9.23 16
21 O -0.59 -17.87 15.39 -3.03 -0.05 -17.91 16
22 C -0.12 -0.64 4.05 29.85 0.12 -0.52 16
23 C -0.14 -1.63 4.96 30.59 0.15 -1.48 16
24 C 0.06 0.39 7.55 71.98 0.54 0.94 16
25 F -0.24 -4.01 17.36 44.97 0.78 -3.23 16
26 C 0.11 2.20 6.04 86.36 0.52 2.72 16
27 N -0.12 -4.56 13.16 37.02 0.49 -4.07 16
28 N -0.30 -12.96 12.41 -48.60 -0.60 -13.56 16
29 H 0.25 15.49 8.31 -92.71 -0.77 14.72 16
30 H 0.37 21.83 7.66 -92.71 -0.71 21.12 16
31 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16
32 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16
33 H 0.23 4.29 7.34 -2.91 -0.02 4.27 16
34 H 0.09 0.58 7.24 -2.39 -0.02 0.57 16
35 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16
36 H 0.12 -0.54 8.14 -2.38 -0.02 -0.56 16
37 H 0.08 0.09 8.14 -2.39 -0.02 0.07 16
38 H 0.09 0.02 8.14 -2.39 -0.02 0.00 16
39 H 0.13 -0.71 5.95 -2.39 -0.01 -0.73 16
40 H 0.14 -0.17 7.94 -2.39 -0.02 -0.19 16
41 H 0.14 -0.30 7.70 -2.39 -0.02 -0.32 16
42 H 0.06 0.95 8.10 -2.39 -0.02 0.93 16
43 H 0.06 0.94 8.10 -2.38 -0.02 0.92 16
44 H 0.10 0.14 8.14 -2.39 -0.02 0.12 16
45 H 0.10 0.09 8.14 -2.39 -0.02 0.08 16
46 H 0.06 1.83 7.01 -2.38 -0.02 1.81 16
47 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16
Total: -1.00 -92.39 388.98 3.86 -88.53
By element:
Atomic # 1 Polarization: 17.72 SS G_CDS: 0.28 Total: 18.00 kcal
Atomic # 6 Polarization: -0.12 SS G_CDS: 6.09 Total: 5.98 kcal
Atomic # 7 Polarization: -134.98 SS G_CDS: -5.27 Total: -140.25 kcal
Atomic # 8 Polarization: -17.87 SS G_CDS: -0.05 Total: -17.91 kcal
Atomic # 9 Polarization: -4.01 SS G_CDS: 0.78 Total: -3.23 kcal
Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.88 kcal
Total: -92.39 3.86 -88.53 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001185983505.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 80.628 kcal
(2) G-P(sol) polarization free energy of solvation -92.390 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.762 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.857 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.533 kcal
(6) G-S(sol) free energy of system = (1) + (5) -7.905 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.86 seconds