Wall clock time and date at job start Tue Mar 31 2020 23:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38879 * 119.23778 * 2 1 4 4 C 1.36888 * 119.81166 * 180.02562 * 3 2 1 5 5 C 1.41117 * 118.39831 * 359.74327 * 4 3 2 6 6 C 1.40852 * 120.71816 * 180.24871 * 5 4 3 7 7 H 1.08000 * 120.00201 * 150.83489 * 6 5 4 8 8 C 1.40045 * 120.00175 * 330.83700 * 6 5 4 9 9 N 1.30789 * 120.00115 * 162.83265 * 8 6 5 10 10 Si 1.86803 * 119.99934 * 342.83531 * 8 6 5 11 11 H 1.48503 * 109.47173 * 90.57663 * 10 8 6 12 12 H 1.48497 * 109.46902 * 210.57873 * 10 8 6 13 13 H 1.48499 * 109.46989 * 330.57540 * 10 8 6 14 14 C 1.41922 * 118.55787 * 0.47359 * 5 4 3 15 15 C 1.47686 * 119.99569 * 179.79773 * 14 5 4 16 16 C 1.40140 * 120.87581 * 136.73947 * 15 14 5 17 17 N 1.32004 * 119.00373 * 180.02562 * 16 15 14 18 18 C 1.32627 * 120.90347 * 359.97438 * 17 16 15 19 19 N 1.38126 * 119.03087 * 180.02562 * 18 17 16 20 20 C 1.46956 * 111.00118 * 179.97438 * 19 18 17 21 21 C 1.53051 * 109.36634 * 183.18305 * 20 19 18 22 22 N 1.46958 * 109.36688 * 301.59826 * 21 20 19 23 23 C 1.46896 * 111.00226 * 183.18648 * 22 21 20 24 24 C 1.46956 * 110.87781 * 59.31833 * 22 21 20 25 25 C 1.46958 * 110.99864 * 303.79589 * 19 18 17 26 26 N 1.32633 * 121.93623 * 0.27444 * 18 17 16 27 27 C 1.31999 * 120.90166 * 359.44232 * 26 18 17 28 28 N 1.31735 * 119.25154 * 179.97438 * 2 1 3 29 29 H 1.08996 * 109.46791 * 270.01743 * 1 2 3 30 30 H 1.08996 * 109.47210 * 30.02757 * 1 2 3 31 31 H 1.09004 * 109.46456 * 150.02798 * 1 2 3 32 32 H 1.08000 * 120.09274 * 359.97087 * 3 2 1 33 33 H 1.07999 * 120.79489 * 180.02562 * 4 3 2 34 34 H 0.97001 * 120.00318 * 180.02562 * 9 8 6 35 35 H 1.08003 * 120.49570 * 359.97438 * 16 15 14 36 36 H 1.09001 * 109.49012 * 63.21754 * 20 19 18 37 37 H 1.09003 * 109.50732 * 303.16443 * 20 19 18 38 38 H 1.09001 * 109.48846 * 181.63127 * 21 20 19 39 39 H 1.09006 * 109.48502 * 61.56626 * 21 20 19 40 40 H 1.08996 * 109.47163 * 59.99953 * 23 22 21 41 41 H 1.09002 * 109.46871 * 300.00435 * 23 22 21 42 42 H 1.08993 * 109.47161 * 180.02562 * 23 22 21 43 43 H 1.09001 * 109.49012 * 60.64749 * 24 22 21 44 44 H 1.09005 * 109.49248 * 180.71301 * 24 22 21 45 45 H 1.09001 * 109.49167 * 296.78448 * 25 19 18 46 46 H 1.09004 * 109.48610 * 56.82491 * 25 19 18 47 47 H 1.08005 * 120.49668 * 180.27261 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1854 1.2119 0.0000 4 6 3.5542 1.2256 -0.0005 5 6 4.2377 -0.0090 0.0045 6 6 5.6456 -0.0519 0.0094 7 1 6.1589 -0.8837 0.4688 8 6 6.3798 0.9841 -0.5813 9 7 7.6481 1.1310 -0.2975 10 14 5.5477 2.1561 -1.7744 11 1 5.0034 3.3187 -1.0277 12 1 6.5379 2.6297 -2.7746 13 1 4.4405 1.4516 -2.4692 14 6 3.4758 -1.2064 -0.0004 15 6 4.1586 -2.5159 0.0001 16 6 3.7111 -3.5599 0.8209 17 7 4.3493 -4.7151 0.7924 18 6 5.3988 -4.8941 0.0014 19 7 6.0374 -6.1189 0.0020 20 6 7.1701 -6.1227 -0.9343 21 6 7.8001 -7.5172 -0.9631 22 7 8.2388 -7.8818 0.3913 23 6 8.9180 -9.1843 0.3919 24 6 7.1061 -7.8780 1.3275 25 6 6.4756 -6.4837 1.3564 26 7 5.8562 -3.9301 -0.7864 27 6 5.2706 -2.7476 -0.8206 28 7 2.1507 -1.1494 0.0005 29 1 -0.3633 0.0003 1.0276 30 1 -0.3633 0.8897 -0.5142 31 1 -0.3632 -0.8903 -0.5134 32 1 1.6345 2.1408 -0.0005 33 1 4.0978 2.1588 -0.0001 34 1 8.1566 1.8488 -0.7064 35 1 2.8575 -3.4211 1.4678 36 1 7.9132 -5.3946 -0.6090 37 1 6.8182 -5.8619 -1.9325 38 1 8.6584 -7.5147 -1.6350 39 1 7.0648 -8.2412 -1.3144 40 1 9.7917 -9.1388 -0.2581 41 1 8.2339 -9.9509 0.0278 42 1 9.2318 -9.4300 1.4064 43 1 6.3630 -8.6061 1.0022 44 1 7.4584 -8.1386 2.3256 45 1 7.2106 -5.7598 1.7082 46 1 5.6171 -6.4860 2.0281 47 1 5.6459 -1.9686 -1.4678 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235916053.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:41:44 Heat of formation + Delta-G solvation = 99.816200 kcal Electronic energy + Delta-G solvation = -29057.723160 eV Core-core repulsion = 25240.576495 eV Total energy + Delta-G solvation = -3817.146665 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.76830 -39.21057 -38.54951 -35.56359 -34.45097 -33.20440 -32.58392 -31.75851 -30.98506 -29.87782 -28.32779 -27.74996 -24.82565 -24.54164 -23.87364 -22.98381 -22.60402 -21.49885 -20.58781 -19.88894 -17.80067 -17.53468 -16.93344 -16.08800 -15.67674 -15.33648 -15.20881 -15.03438 -14.86813 -14.61679 -14.29084 -13.94022 -13.70732 -13.60819 -13.38133 -13.27868 -12.85843 -12.57614 -12.48947 -12.28985 -12.19255 -11.90189 -11.88841 -11.68729 -11.42352 -11.35064 -11.02582 -11.00210 -10.93601 -10.76847 -10.36801 -10.26025 -10.04418 -9.67430 -9.63509 -8.89361 -8.55101 -8.48247 -8.39174 -8.08741 -7.49341 -7.27230 -4.77164 1.32025 1.77133 2.27497 2.52428 2.88067 3.00527 3.08855 3.46696 3.69783 3.77745 4.22291 4.36036 4.64445 4.78188 4.89143 5.05071 5.09562 5.12473 5.17169 5.28565 5.32550 5.39825 5.40320 5.44563 5.51819 5.65834 5.70734 5.71139 5.73514 5.91590 5.94196 5.96223 6.05384 6.13254 6.20863 6.23499 6.32850 6.46800 6.52578 6.67199 6.71514 6.80496 6.85189 6.94117 6.96541 7.23552 7.25585 7.35176 7.57835 7.76224 7.96851 8.20838 8.38703 8.69571 9.21031 9.71793 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.014124 B = 0.003215 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.991063 B = 8707.137946 C =10215.308424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.012 4.012 3 C -0.111 4.111 4 C -0.205 4.205 5 C 0.062 3.938 6 C -0.425 4.425 7 H 0.099 0.901 8 C 0.083 3.917 9 N -0.781 5.781 10 Si 0.912 3.088 11 H -0.265 1.265 12 H -0.285 1.285 13 H -0.245 1.245 14 C 0.041 3.959 15 C -0.105 4.105 16 C 0.172 3.828 17 N -0.534 5.534 18 C 0.461 3.539 19 N -0.463 5.463 20 C 0.073 3.927 21 C 0.055 3.945 22 N -0.547 5.547 23 C 0.026 3.974 24 C 0.058 3.942 25 C 0.069 3.931 26 N -0.549 5.549 27 C 0.193 3.807 28 N -0.437 5.437 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.106 0.894 33 H 0.114 0.886 34 H 0.292 0.708 35 H 0.165 0.835 36 H 0.062 0.938 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.042 0.958 40 H 0.068 0.932 41 H 0.025 0.975 42 H 0.067 0.933 43 H 0.045 0.955 44 H 0.084 0.916 45 H 0.050 0.950 46 H 0.097 0.903 47 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.063 -10.084 -0.252 10.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.152 4.152 3 C -0.131 4.131 4 C -0.230 4.230 5 C 0.057 3.943 6 C -0.452 4.452 7 H 0.117 0.883 8 C -0.140 4.140 9 N -0.403 5.403 10 Si 0.738 3.262 11 H -0.191 1.191 12 H -0.212 1.212 13 H -0.168 1.168 14 C -0.100 4.100 15 C -0.111 4.111 16 C 0.005 3.995 17 N -0.251 5.251 18 C 0.105 3.895 19 N -0.183 5.183 20 C -0.054 4.054 21 C -0.073 4.073 22 N -0.272 5.272 23 C -0.122 4.122 24 C -0.070 4.070 25 C -0.058 4.058 26 N -0.268 5.268 27 C 0.025 3.975 28 N -0.145 5.145 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.124 0.876 33 H 0.132 0.868 34 H 0.103 0.897 35 H 0.182 0.818 36 H 0.080 0.920 37 H 0.110 0.890 38 H 0.102 0.898 39 H 0.060 0.940 40 H 0.087 0.913 41 H 0.044 0.956 42 H 0.086 0.914 43 H 0.063 0.937 44 H 0.102 0.898 45 H 0.069 0.931 46 H 0.115 0.885 47 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 0.377 -11.709 -0.235 11.717 hybrid contribution -0.207 2.326 -0.486 2.385 sum 0.171 -9.383 -0.721 9.412 Atomic orbital electron populations 1.20301 0.90942 1.01235 1.00803 1.20269 0.95138 0.88131 1.11672 1.21203 0.94761 0.97714 0.99458 1.21215 0.94119 0.97611 1.10039 1.18381 0.94294 0.91046 0.90621 1.19500 0.89517 1.06219 1.29979 0.88311 1.26261 0.94794 0.96631 0.96287 1.69649 1.08854 1.27962 1.33839 0.86332 0.79749 0.80278 0.79883 1.19118 1.21183 1.16790 1.18947 0.88135 0.90191 1.12762 1.19942 0.97885 0.94637 0.98682 1.23147 0.96049 0.86303 0.93996 1.67816 1.08734 1.24738 1.23830 1.20795 0.90341 0.88166 0.90155 1.58561 1.27236 1.22849 1.09695 1.22050 0.90496 0.95942 0.96946 1.22279 0.98888 0.96306 0.89856 1.62174 1.27233 1.29748 1.08085 1.22333 0.98492 0.88955 1.02401 1.22201 0.91507 0.96373 0.96947 1.22225 0.99715 0.96030 0.87816 1.68294 1.31834 1.01428 1.25219 1.23427 0.89244 0.91849 0.92958 1.66860 1.09326 1.29459 1.08871 0.92834 0.92720 0.92273 0.87613 0.86804 0.89723 0.81815 0.91976 0.89015 0.89760 0.93982 0.91302 0.95638 0.91381 0.93696 0.89798 0.93120 0.88469 0.80635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.19 10.15 36.01 0.37 -0.82 16 2 C -0.01 -0.24 6.79 -82.39 -0.56 -0.80 16 3 C -0.11 -2.24 9.64 -39.83 -0.38 -2.62 16 4 C -0.20 -4.53 7.31 -38.98 -0.28 -4.81 16 5 C 0.06 1.45 5.13 -106.41 -0.55 0.90 16 6 C -0.42 -10.26 7.25 -37.92 -0.27 -10.53 16 7 H 0.10 2.56 6.71 -52.49 -0.35 2.21 16 8 C 0.08 1.95 5.43 -17.32 -0.09 1.85 16 9 N -0.78 -18.81 13.93 55.55 0.77 -18.04 16 10 Si 0.91 18.73 24.53 -169.99 -4.17 14.56 16 11 H -0.27 -5.27 6.47 56.52 0.37 -4.90 16 12 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 13 H -0.24 -5.20 6.99 56.52 0.40 -4.81 16 14 C 0.04 0.92 6.47 -82.25 -0.53 0.39 16 15 C -0.11 -2.23 5.28 -104.61 -0.55 -2.78 16 16 C 0.17 3.39 10.98 -16.76 -0.18 3.20 16 17 N -0.53 -10.33 9.68 -13.61 -0.13 -10.46 16 18 C 0.46 8.78 7.16 -322.86 -2.31 6.47 16 19 N -0.46 -7.48 4.76 -175.25 -0.83 -8.32 16 20 C 0.07 1.06 4.76 -3.77 -0.02 1.04 16 21 C 0.05 0.63 5.62 -3.77 -0.02 0.61 16 22 N -0.55 -6.24 4.97 -242.76 -1.21 -7.45 16 23 C 0.03 0.23 9.60 60.06 0.58 0.80 16 24 C 0.06 0.66 5.62 -3.77 -0.02 0.63 16 25 C 0.07 0.98 5.46 -3.77 -0.02 0.96 16 26 N -0.55 -10.94 8.65 -13.61 -0.12 -11.06 16 27 C 0.19 4.02 9.16 -16.77 -0.15 3.87 16 28 N -0.44 -9.61 10.07 -5.46 -0.05 -9.66 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.05 0.75 8.07 -51.93 -0.42 0.33 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 33 H 0.11 2.46 4.52 -52.49 -0.24 2.22 16 34 H 0.29 6.34 8.30 -40.82 -0.34 6.00 16 35 H 0.16 2.97 8.06 -52.48 -0.42 2.55 16 36 H 0.06 1.00 8.02 -51.93 -0.42 0.58 16 37 H 0.09 1.36 7.80 -51.93 -0.40 0.95 16 38 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.03 0.21 8.14 -51.93 -0.42 -0.22 16 42 H 0.07 0.52 8.13 -51.93 -0.42 0.10 16 43 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.08 0.80 8.13 -51.93 -0.42 0.38 16 45 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.10 1.39 7.63 -51.93 -0.40 0.99 16 47 H 0.18 3.69 6.80 -52.48 -0.36 3.33 16 LS Contribution 374.32 15.07 5.64 5.64 Total: -1.00 -26.78 374.32 -11.95 -38.73 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -6.83 Total: 7.71 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: -5.02 Total: -1.65 kcal Atomic # 7 Polarization: -63.42 SS G_CDS: -1.57 Total: -64.99 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -4.17 Total: 14.56 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -26.78 -11.95 -38.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235916053.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.545 kcal (2) G-P(sol) polarization free energy of solvation -26.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds