Wall clock time and date at job start Tue Mar 31 2020 23:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38879 * 119.23778 * 2 1 4 4 C 1.36888 * 119.81166 * 180.02562 * 3 2 1 5 5 C 1.41117 * 118.39831 * 359.74327 * 4 3 2 6 6 C 1.40852 * 120.71816 * 180.24871 * 5 4 3 7 7 H 1.08000 * 120.00201 * 150.83489 * 6 5 4 8 8 C 1.40045 * 120.00175 * 330.83700 * 6 5 4 9 9 N 1.30789 * 120.00115 * 162.83265 * 8 6 5 10 10 Si 1.86803 * 119.99934 * 342.83531 * 8 6 5 11 11 H 1.48503 * 109.47173 * 90.57663 * 10 8 6 12 12 H 1.48497 * 109.46902 * 210.57873 * 10 8 6 13 13 H 1.48499 * 109.46989 * 330.57540 * 10 8 6 14 14 C 1.41922 * 118.55787 * 0.47359 * 5 4 3 15 15 C 1.47686 * 119.99569 * 179.79773 * 14 5 4 16 16 C 1.40140 * 120.87581 * 136.73947 * 15 14 5 17 17 N 1.32004 * 119.00373 * 180.02562 * 16 15 14 18 18 C 1.32627 * 120.90347 * 359.97438 * 17 16 15 19 19 N 1.38126 * 119.03087 * 180.02562 * 18 17 16 20 20 C 1.46956 * 111.00118 * 179.97438 * 19 18 17 21 21 C 1.53051 * 109.36634 * 183.18305 * 20 19 18 22 22 N 1.46958 * 109.36688 * 301.59826 * 21 20 19 23 23 C 1.46896 * 111.00226 * 183.18648 * 22 21 20 24 24 C 1.46956 * 110.87781 * 59.31833 * 22 21 20 25 25 C 1.46958 * 110.99864 * 303.79589 * 19 18 17 26 26 N 1.32633 * 121.93623 * 0.27444 * 18 17 16 27 27 C 1.31999 * 120.90166 * 359.44232 * 26 18 17 28 28 N 1.31735 * 119.25154 * 179.97438 * 2 1 3 29 29 H 1.08996 * 109.46791 * 270.01743 * 1 2 3 30 30 H 1.08996 * 109.47210 * 30.02757 * 1 2 3 31 31 H 1.09004 * 109.46456 * 150.02798 * 1 2 3 32 32 H 1.08000 * 120.09274 * 359.97087 * 3 2 1 33 33 H 1.07999 * 120.79489 * 180.02562 * 4 3 2 34 34 H 0.97001 * 120.00318 * 180.02562 * 9 8 6 35 35 H 1.08003 * 120.49570 * 359.97438 * 16 15 14 36 36 H 1.09001 * 109.49012 * 63.21754 * 20 19 18 37 37 H 1.09003 * 109.50732 * 303.16443 * 20 19 18 38 38 H 1.09001 * 109.48846 * 181.63127 * 21 20 19 39 39 H 1.09006 * 109.48502 * 61.56626 * 21 20 19 40 40 H 1.08996 * 109.47163 * 59.99953 * 23 22 21 41 41 H 1.09002 * 109.46871 * 300.00435 * 23 22 21 42 42 H 1.08993 * 109.47161 * 180.02562 * 23 22 21 43 43 H 1.09001 * 109.49012 * 60.64749 * 24 22 21 44 44 H 1.09005 * 109.49248 * 180.71301 * 24 22 21 45 45 H 1.09001 * 109.49167 * 296.78448 * 25 19 18 46 46 H 1.09004 * 109.48610 * 56.82491 * 25 19 18 47 47 H 1.08005 * 120.49668 * 180.27261 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1854 1.2119 0.0000 4 6 3.5542 1.2256 -0.0005 5 6 4.2377 -0.0090 0.0045 6 6 5.6456 -0.0519 0.0094 7 1 6.1589 -0.8837 0.4688 8 6 6.3798 0.9841 -0.5813 9 7 7.6481 1.1310 -0.2975 10 14 5.5477 2.1561 -1.7744 11 1 5.0034 3.3187 -1.0277 12 1 6.5379 2.6297 -2.7746 13 1 4.4405 1.4516 -2.4692 14 6 3.4758 -1.2064 -0.0004 15 6 4.1586 -2.5159 0.0001 16 6 3.7111 -3.5599 0.8209 17 7 4.3493 -4.7151 0.7924 18 6 5.3988 -4.8941 0.0014 19 7 6.0374 -6.1189 0.0020 20 6 7.1701 -6.1227 -0.9343 21 6 7.8001 -7.5172 -0.9631 22 7 8.2388 -7.8818 0.3913 23 6 8.9180 -9.1843 0.3919 24 6 7.1061 -7.8780 1.3275 25 6 6.4756 -6.4837 1.3564 26 7 5.8562 -3.9301 -0.7864 27 6 5.2706 -2.7476 -0.8206 28 7 2.1507 -1.1494 0.0005 29 1 -0.3633 0.0003 1.0276 30 1 -0.3633 0.8897 -0.5142 31 1 -0.3632 -0.8903 -0.5134 32 1 1.6345 2.1408 -0.0005 33 1 4.0978 2.1588 -0.0001 34 1 8.1566 1.8488 -0.7064 35 1 2.8575 -3.4211 1.4678 36 1 7.9132 -5.3946 -0.6090 37 1 6.8182 -5.8619 -1.9325 38 1 8.6584 -7.5147 -1.6350 39 1 7.0648 -8.2412 -1.3144 40 1 9.7917 -9.1388 -0.2581 41 1 8.2339 -9.9509 0.0278 42 1 9.2318 -9.4300 1.4064 43 1 6.3630 -8.6061 1.0022 44 1 7.4584 -8.1386 2.3256 45 1 7.2106 -5.7598 1.7082 46 1 5.6171 -6.4860 2.0281 47 1 5.6459 -1.9686 -1.4678 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235916053.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:41:43 Heat of formation + Delta-G solvation = 83.851425 kcal Electronic energy + Delta-G solvation = -29058.415444 eV Core-core repulsion = 25240.576495 eV Total energy + Delta-G solvation = -3817.838950 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.27006 -40.68873 -39.89000 -36.74283 -36.14332 -34.79059 -34.13746 -33.44766 -32.06211 -31.27947 -29.77704 -29.01121 -26.25202 -25.95110 -25.14339 -24.24702 -24.02947 -23.09885 -22.18256 -21.00320 -19.50267 -18.95515 -18.49023 -17.73707 -17.27748 -16.61604 -16.40661 -16.14298 -16.09571 -15.80780 -15.57602 -15.44213 -15.23706 -15.12805 -14.92217 -14.60811 -14.39491 -14.15895 -13.74065 -13.54952 -13.46564 -13.11067 -13.05641 -12.94984 -12.75224 -12.55208 -12.48521 -12.31687 -12.08499 -12.00962 -11.97310 -11.86818 -11.68385 -11.37337 -11.13548 -10.49592 -10.16570 -10.04747 -9.69357 -9.35951 -9.09155 -9.01680 -6.56669 -0.28603 0.15005 0.61700 0.82549 1.21953 1.36145 1.44505 2.02521 2.09990 2.52571 2.75822 2.92120 3.13852 3.40083 3.54127 3.62637 3.79000 3.85446 3.95276 4.10041 4.12541 4.17533 4.19153 4.30931 4.41160 4.49321 4.53154 4.62838 4.64158 4.70109 4.76279 4.81071 4.82244 4.87468 4.92849 4.95972 5.00716 5.01874 5.05205 5.18108 5.23823 5.32914 5.53697 5.57346 5.65670 5.72349 5.91475 5.98838 6.03853 6.14731 6.21122 6.49461 6.60109 7.11694 7.52762 8.03422 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.014124 B = 0.003215 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.991063 B = 8707.137946 C =10215.308424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.007 4.007 3 C -0.114 4.114 4 C -0.214 4.214 5 C 0.045 3.955 6 C -0.448 4.448 7 H 0.064 0.936 8 C 0.055 3.945 9 N -0.823 5.823 10 Si 0.959 3.041 11 H -0.249 1.249 12 H -0.275 1.275 13 H -0.257 1.257 14 C 0.032 3.968 15 C -0.125 4.125 16 C 0.179 3.821 17 N -0.536 5.536 18 C 0.459 3.541 19 N -0.462 5.462 20 C 0.075 3.925 21 C 0.064 3.936 22 N -0.564 5.564 23 C 0.028 3.972 24 C 0.066 3.934 25 C 0.070 3.930 26 N -0.558 5.558 27 C 0.189 3.811 28 N -0.453 5.453 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.060 0.940 32 H 0.146 0.854 33 H 0.119 0.881 34 H 0.299 0.701 35 H 0.180 0.820 36 H 0.041 0.959 37 H 0.084 0.916 38 H 0.103 0.897 39 H 0.047 0.953 40 H 0.077 0.923 41 H 0.033 0.967 42 H 0.079 0.921 43 H 0.050 0.950 44 H 0.106 0.894 45 H 0.033 0.967 46 H 0.095 0.905 47 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.683 -10.606 -0.318 10.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.148 4.148 3 C -0.133 4.133 4 C -0.239 4.239 5 C 0.040 3.960 6 C -0.476 4.476 7 H 0.083 0.917 8 C -0.164 4.164 9 N -0.447 5.447 10 Si 0.782 3.218 11 H -0.174 1.174 12 H -0.201 1.201 13 H -0.181 1.181 14 C -0.108 4.108 15 C -0.131 4.131 16 C 0.011 3.989 17 N -0.253 5.253 18 C 0.103 3.897 19 N -0.182 5.182 20 C -0.052 4.052 21 C -0.064 4.064 22 N -0.289 5.289 23 C -0.120 4.120 24 C -0.062 4.062 25 C -0.057 4.057 26 N -0.277 5.277 27 C 0.022 3.978 28 N -0.162 5.162 29 H 0.090 0.910 30 H 0.101 0.899 31 H 0.079 0.921 32 H 0.163 0.837 33 H 0.136 0.864 34 H 0.110 0.890 35 H 0.197 0.803 36 H 0.060 0.940 37 H 0.102 0.898 38 H 0.121 0.879 39 H 0.065 0.935 40 H 0.096 0.904 41 H 0.051 0.949 42 H 0.098 0.902 43 H 0.068 0.932 44 H 0.124 0.876 45 H 0.052 0.948 46 H 0.113 0.887 47 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -1.342 -12.261 -0.292 12.337 hybrid contribution 0.174 2.364 -0.413 2.406 sum -1.168 -9.896 -0.705 9.990 Atomic orbital electron populations 1.20416 0.87402 1.02791 1.02448 1.21201 0.97547 0.87719 1.08310 1.21635 0.94093 0.99477 0.98119 1.21424 0.95340 0.97181 1.10002 1.18533 0.94082 0.92166 0.91200 1.19279 0.90104 1.06114 1.32111 0.91747 1.26815 0.95064 0.97533 0.96983 1.69673 1.09961 1.29429 1.35630 0.85613 0.78747 0.79002 0.78395 1.17365 1.20076 1.18102 1.19139 0.88656 0.90487 1.12481 1.19978 0.98416 0.94925 0.99772 1.23360 0.96107 0.85930 0.93467 1.67907 1.08980 1.24516 1.23945 1.21275 0.90336 0.88836 0.89261 1.58714 1.27702 1.20738 1.11081 1.22077 0.89459 0.97729 0.95971 1.22212 0.99473 0.94060 0.90691 1.62175 1.27245 1.31784 1.07698 1.22389 0.98588 0.87483 1.03504 1.22169 0.91651 0.94074 0.98305 1.22302 0.99347 0.97577 0.86439 1.68322 1.31938 1.01444 1.25987 1.23301 0.89372 0.92034 0.93116 1.66992 1.08848 1.30543 1.09811 0.91011 0.89868 0.92091 0.83650 0.86393 0.88961 0.80304 0.94043 0.89782 0.87910 0.93464 0.90402 0.94874 0.90230 0.93207 0.87591 0.94821 0.88695 0.81757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.02 10.15 71.24 0.72 -1.30 16 2 C -0.01 -0.26 6.79 42.73 0.29 0.03 16 3 C -0.11 -4.26 9.64 22.11 0.21 -4.04 16 4 C -0.21 -9.27 7.31 22.66 0.17 -9.10 16 5 C 0.05 2.16 5.13 -21.02 -0.11 2.05 16 6 C -0.45 -22.84 7.25 23.35 0.17 -22.67 16 7 H 0.06 3.63 6.71 -2.91 -0.02 3.61 16 8 C 0.05 2.66 5.43 85.29 0.46 3.12 16 9 N -0.82 -41.44 13.93 21.84 0.30 -41.13 16 10 Si 0.96 38.68 24.53 68.60 1.68 40.36 16 11 H -0.25 -9.27 6.47 99.48 0.64 -8.63 16 12 H -0.27 -10.47 7.11 99.48 0.71 -9.77 16 13 H -0.26 -10.76 6.99 99.48 0.70 -10.07 16 14 C 0.03 1.47 6.47 42.43 0.27 1.74 16 15 C -0.12 -5.48 5.28 -19.86 -0.10 -5.59 16 16 C 0.18 7.17 10.98 85.13 0.93 8.11 16 17 N -0.54 -21.07 9.68 -196.96 -1.91 -22.97 16 18 C 0.46 17.97 7.16 261.51 1.87 19.84 16 19 N -0.46 -15.08 4.76 -708.35 -3.37 -18.46 16 20 C 0.08 2.21 4.76 86.31 0.41 2.62 16 21 C 0.06 1.39 5.62 86.31 0.49 1.88 16 22 N -0.56 -11.86 4.97 -921.95 -4.58 -16.44 16 23 C 0.03 0.40 9.60 127.69 1.23 1.63 16 24 C 0.07 1.39 5.62 86.31 0.49 1.87 16 25 C 0.07 1.96 5.46 86.31 0.47 2.44 16 26 N -0.56 -23.39 8.65 -196.97 -1.70 -25.10 16 27 C 0.19 8.38 9.16 85.13 0.78 9.16 16 28 N -0.45 -19.52 10.07 -171.18 -1.72 -21.25 16 29 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.08 1.85 8.07 -2.39 -0.02 1.83 16 31 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.15 4.25 8.06 -2.91 -0.02 4.23 16 33 H 0.12 4.94 4.52 -2.91 -0.01 4.93 16 34 H 0.30 13.49 8.30 -92.71 -0.77 12.72 16 35 H 0.18 6.48 8.06 -2.91 -0.02 6.46 16 36 H 0.04 1.39 8.02 -2.39 -0.02 1.37 16 37 H 0.08 2.56 7.80 -2.39 -0.02 2.54 16 38 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 40 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.03 0.44 8.14 -2.39 -0.02 0.42 16 42 H 0.08 0.98 8.13 -2.39 -0.02 0.96 16 43 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.11 1.77 8.13 -2.38 -0.02 1.75 16 45 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 46 H 0.09 2.69 7.63 -2.39 -0.02 2.67 16 47 H 0.17 7.53 6.80 -2.91 -0.02 7.51 16 Total: -1.00 -59.75 374.32 -1.64 -61.39 By element: Atomic # 1 Polarization: 30.91 SS G_CDS: 0.91 Total: 31.82 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: 8.75 Total: 11.78 kcal Atomic # 7 Polarization: -132.36 SS G_CDS: -12.98 Total: -145.35 kcal Atomic # 14 Polarization: 38.68 SS G_CDS: 1.68 Total: 40.36 kcal Total: -59.75 -1.64 -61.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235916053.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.237 kcal (2) G-P(sol) polarization free energy of solvation -59.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds