Wall clock time and date at job start Tue Mar 31 2020 23:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36936 * 119.99759 * 2 1 4 4 H 1.07998 * 120.00145 * 202.67956 * 3 2 1 5 5 C 1.38818 * 120.00417 * 22.68127 * 3 2 1 6 6 N 1.31623 * 119.99591 * 11.49237 * 5 3 2 7 7 Si 1.86790 * 120.00201 * 191.49281 * 5 3 2 8 8 H 1.48509 * 109.47295 * 60.00203 * 7 5 3 9 9 H 1.48498 * 109.46987 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47282 * 299.99959 * 7 5 3 11 11 C 1.46502 * 120.00148 * 180.02562 * 2 1 3 12 12 C 1.53007 * 109.46961 * 269.99725 * 11 2 1 13 13 O 1.42901 * 109.46914 * 65.00127 * 12 11 2 14 14 C 1.42896 * 113.99625 * 179.97438 * 13 12 11 15 15 C 1.52999 * 109.46976 * 180.02562 * 14 13 12 16 16 N 1.46494 * 109.47261 * 64.99964 * 15 14 13 17 17 C 1.46501 * 120.00208 * 270.00155 * 16 15 14 18 18 C 1.34780 * 120.00005 * 90.00072 * 16 15 14 19 19 O 1.21279 * 120.00013 * 0.02562 * 18 16 15 20 20 C 1.50701 * 120.00101 * 180.02562 * 18 16 15 21 21 C 1.50697 * 109.46971 * 179.97438 * 20 18 16 22 22 C 1.38235 * 119.58954 * 125.00094 * 21 20 18 23 23 C 1.38586 * 119.18971 * 179.97438 * 22 21 20 24 24 C 1.38873 * 118.40157 * 0.25032 * 23 22 21 25 25 F 1.35100 * 120.45093 * 179.74321 * 24 23 22 26 26 C 1.38430 * 119.11016 * 359.52487 * 24 23 22 27 27 N 1.31847 * 119.59162 * 305.01701 * 21 20 18 28 28 H 1.09010 * 109.47022 * 273.92918 * 1 2 3 29 29 H 1.08998 * 109.47746 * 33.93018 * 1 2 3 30 30 H 1.08998 * 109.47252 * 153.93705 * 1 2 3 31 31 H 0.97000 * 119.99759 * 179.97438 * 6 5 3 32 32 H 1.09004 * 109.46837 * 149.99790 * 11 2 1 33 33 H 1.08996 * 109.46872 * 29.99765 * 11 2 1 34 34 H 1.09004 * 109.46862 * 304.99946 * 12 11 2 35 35 H 1.09001 * 109.46920 * 185.00124 * 12 11 2 36 36 H 1.08996 * 109.47379 * 59.99995 * 14 13 12 37 37 H 1.08999 * 109.47133 * 299.99936 * 14 13 12 38 38 H 1.09000 * 109.46899 * 305.00062 * 15 14 13 39 39 H 1.09003 * 109.47237 * 185.00069 * 15 14 13 40 40 H 1.09000 * 109.47422 * 269.99958 * 17 16 15 41 41 H 1.09004 * 109.47054 * 29.99681 * 17 16 15 42 42 H 1.09006 * 109.47103 * 149.99857 * 17 16 15 43 43 H 1.08997 * 109.47116 * 59.99713 * 20 18 16 44 44 H 1.09009 * 109.46670 * 299.99613 * 20 18 16 45 45 H 1.08001 * 120.40858 * 0.02562 * 22 21 20 46 46 H 1.08003 * 120.79979 * 179.97438 * 23 22 21 47 47 H 1.07997 * 119.63441 * 180.20621 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1670 1.2222 -0.3606 5 6 1.5361 2.3417 0.4636 6 7 0.3911 2.2656 1.1082 7 14 2.3354 4.0046 0.1724 8 1 2.4795 4.2358 -1.2875 9 1 1.4864 5.0716 0.7606 10 1 3.6753 4.0286 0.8120 11 6 2.1975 -1.2687 -0.0006 12 6 2.4526 -1.7110 1.4418 13 8 1.2061 -1.9944 2.0806 14 6 1.3326 -2.4189 3.4391 15 6 -0.0563 -2.6935 4.0191 16 7 -0.6648 -3.8246 3.3146 17 6 -1.4790 -3.5910 2.1194 18 6 -0.4756 -5.0804 3.7662 19 8 0.1981 -5.2738 4.7560 20 6 -1.1010 -6.2441 3.0412 21 6 -0.7381 -7.5271 3.7435 22 6 -1.7396 -8.3844 4.1594 23 6 -1.3965 -9.5623 4.8040 24 6 -0.0505 -9.8334 5.0123 25 9 0.3303 -10.9670 5.6409 26 6 0.8961 -8.9287 4.5631 27 7 0.5306 -7.8178 3.9539 28 1 -0.3633 0.0704 1.0253 29 1 -0.3634 0.8526 -0.5736 30 1 -0.3634 -0.9231 -0.4515 31 1 -0.0375 3.0732 1.4325 32 1 3.1500 -1.1381 -0.5144 33 1 1.6084 -2.0281 -0.5147 34 1 2.9643 -0.9138 1.9811 35 1 3.0734 -2.6070 1.4427 36 1 1.8213 -1.6369 4.0202 37 1 1.9300 -3.3297 3.4811 38 1 -0.6824 -1.8097 3.8963 39 1 0.0330 -2.9311 5.0791 40 1 -2.5196 -3.4480 2.4107 41 1 -1.1204 -2.7000 1.6039 42 1 -1.4029 -4.4511 1.4540 43 1 -0.7318 -6.2744 2.0161 44 1 -2.1848 -6.1275 3.0338 45 1 -2.7767 -8.1397 3.9835 46 1 -2.1577 -10.2507 5.1403 47 1 1.9453 -9.1327 4.7176 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264664840.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:49 Heat of formation + Delta-G solvation = -55.685507 kcal Electronic energy + Delta-G solvation = -29339.116589 eV Core-core repulsion = 25052.164889 eV Total energy + Delta-G solvation = -4286.951701 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.29571 -40.73429 -39.49022 -37.43185 -35.59929 -34.89131 -33.15271 -32.81798 -31.50433 -30.17333 -28.30621 -27.75190 -26.19147 -25.70174 -24.32263 -23.39381 -22.91849 -22.09368 -20.28652 -19.20062 -17.97788 -17.72250 -17.09394 -16.72877 -16.68482 -16.10726 -16.04188 -15.63915 -15.52875 -15.08899 -14.57507 -14.36617 -14.34457 -14.04575 -13.71620 -13.41739 -13.28211 -13.24914 -12.96640 -12.83484 -12.49114 -12.38867 -12.29800 -12.07278 -11.89115 -11.37771 -11.30159 -10.91072 -10.79626 -10.72186 -10.48733 -10.28266 -10.05959 -9.92482 -9.90939 -9.78636 -9.71750 -9.13860 -8.86649 -8.54235 -8.46557 -6.65398 -5.65153 -3.10282 0.54071 0.77548 2.66285 2.96961 3.37238 3.41163 3.46506 3.47276 3.64260 3.94053 4.19535 4.33184 4.38123 4.45268 4.55568 4.62819 4.95279 5.01813 5.14087 5.23574 5.37255 5.43333 5.46606 5.47444 5.48083 5.56416 5.60439 5.65177 5.76673 5.85444 6.01986 6.03565 6.18366 6.24091 6.25638 6.31313 6.59633 6.61742 6.81912 6.93319 7.43804 7.50654 7.58483 7.83155 7.91599 7.96737 8.22352 8.47440 9.32120 9.95734 10.46079 11.39284 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.028975 B = 0.002014 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.134035 B =13899.610909 C =14115.406670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.596 5.596 3 C -0.254 4.254 4 H 0.065 0.935 5 C 0.001 3.999 6 N -0.904 5.904 7 Si 0.902 3.098 8 H -0.285 1.285 9 H -0.291 1.291 10 H -0.285 1.285 11 C 0.154 3.846 12 C 0.045 3.955 13 O -0.367 6.367 14 C 0.049 3.951 15 C 0.123 3.877 16 N -0.605 5.605 17 C 0.076 3.924 18 C 0.518 3.482 19 O -0.531 6.531 20 C -0.091 4.091 21 C 0.136 3.864 22 C -0.138 4.138 23 C -0.109 4.109 24 C 0.040 3.960 25 F -0.132 7.132 26 C 0.083 3.917 27 N -0.427 5.427 28 H 0.031 0.969 29 H 0.036 0.964 30 H -0.008 1.008 31 H 0.251 0.749 32 H 0.056 0.944 33 H 0.042 0.958 34 H 0.046 0.954 35 H 0.022 0.978 36 H 0.051 0.949 37 H 0.042 0.958 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.053 0.947 41 H 0.093 0.907 42 H 0.066 0.934 43 H 0.116 0.884 44 H 0.111 0.889 45 H 0.146 0.854 46 H 0.147 0.853 47 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.996 -22.659 5.295 24.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.319 5.319 3 C -0.384 4.384 4 H 0.083 0.917 5 C -0.197 4.197 6 N -0.550 5.550 7 Si 0.733 3.267 8 H -0.212 1.212 9 H -0.217 1.217 10 H -0.211 1.211 11 C 0.026 3.974 12 C -0.035 4.035 13 O -0.286 6.286 14 C -0.030 4.030 15 C 0.000 4.000 16 N -0.338 5.338 17 C -0.067 4.067 18 C 0.304 3.696 19 O -0.407 6.407 20 C -0.131 4.131 21 C -0.002 4.002 22 C -0.158 4.158 23 C -0.136 4.136 24 C 0.019 3.981 25 F -0.111 7.111 26 C -0.077 4.077 27 N -0.135 5.135 28 H 0.050 0.950 29 H 0.055 0.945 30 H 0.011 0.989 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.040 0.960 36 H 0.069 0.931 37 H 0.060 0.940 38 H 0.107 0.893 39 H 0.109 0.891 40 H 0.071 0.929 41 H 0.112 0.888 42 H 0.084 0.916 43 H 0.134 0.866 44 H 0.129 0.871 45 H 0.164 0.836 46 H 0.165 0.835 47 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -6.299 -22.024 5.513 23.561 hybrid contribution 0.141 0.191 0.558 0.606 sum -6.159 -21.834 6.071 23.484 Atomic orbital electron populations 1.20680 0.82279 0.94721 0.99197 1.43867 1.02109 1.00219 1.85690 1.19158 0.98097 0.85652 1.35518 0.91687 1.25015 0.97825 0.98345 0.98506 1.70075 1.18084 1.26896 1.39901 0.86375 0.78474 0.84073 0.77809 1.21178 1.21714 1.21104 1.20881 0.96326 0.88745 0.91462 1.23438 0.85366 0.96720 0.97964 1.87907 1.30190 1.87234 1.23230 1.22750 0.96795 0.97962 0.85465 1.21522 0.93691 0.88508 0.96246 1.47741 1.51187 1.05823 1.29033 1.21918 0.94168 1.03979 0.86609 1.20168 0.80988 0.83541 0.84863 1.90716 1.39204 1.84473 1.26320 1.20655 1.02567 0.89225 1.00702 1.20723 0.88660 0.95148 0.95670 1.21870 1.01137 0.94006 0.98758 1.21597 0.94855 0.98300 0.98836 1.18870 0.94357 0.85621 0.99265 1.91519 1.91839 1.47996 1.79764 1.22932 1.00249 0.89006 0.95469 1.67532 1.19259 1.15620 1.11051 0.95029 0.94488 0.98929 0.93912 0.92539 0.93916 0.93558 0.95979 0.93071 0.94020 0.89263 0.89134 0.92873 0.88789 0.91566 0.86605 0.87117 0.83644 0.83508 0.81624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 4.32 8.61 59.85 0.52 4.84 16 2 N -0.60 -15.01 2.89 -181.11 -0.52 -15.53 16 3 C -0.25 -6.99 9.67 -15.06 -0.15 -7.14 16 4 H 0.07 1.74 7.85 -52.49 -0.41 1.33 16 5 C 0.00 0.04 5.12 -17.43 -0.09 -0.05 16 6 N -0.90 -26.27 10.62 55.49 0.59 -25.68 16 7 Si 0.90 21.91 29.57 -169.99 -5.03 16.89 16 8 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 9 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 C 0.15 3.18 6.12 -4.04 -0.02 3.16 16 12 C 0.04 0.87 6.28 37.16 0.23 1.10 16 13 O -0.37 -7.02 8.72 -35.23 -0.31 -7.33 16 14 C 0.05 0.81 6.28 37.16 0.23 1.04 16 15 C 0.12 1.77 5.81 -4.05 -0.02 1.75 16 16 N -0.60 -7.80 2.84 -181.57 -0.52 -8.31 16 17 C 0.08 0.80 10.06 59.85 0.60 1.41 16 18 C 0.52 6.84 7.61 -10.98 -0.08 6.76 16 19 O -0.53 -9.00 14.91 5.56 0.08 -8.92 16 20 C -0.09 -0.83 4.65 -29.04 -0.14 -0.96 16 21 C 0.14 1.42 5.76 -82.59 -0.48 0.94 16 22 C -0.14 -1.05 9.71 -39.45 -0.38 -1.44 16 23 C -0.11 -0.84 10.16 -39.22 -0.40 -1.23 16 24 C 0.04 0.38 7.35 -39.28 -0.29 0.09 16 25 F -0.13 -1.26 17.28 2.25 0.04 -1.22 16 26 C 0.08 0.87 11.17 -17.47 -0.20 0.68 16 27 N -0.43 -5.36 9.22 -9.42 -0.09 -5.45 16 28 H 0.03 0.84 7.43 -51.92 -0.39 0.45 16 29 H 0.04 0.98 7.20 -51.93 -0.37 0.61 16 30 H -0.01 -0.17 7.85 -51.93 -0.41 -0.58 16 31 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 32 H 0.06 1.11 8.03 -51.93 -0.42 0.69 16 33 H 0.04 0.82 7.86 -51.93 -0.41 0.41 16 34 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.09 1.29 8.07 -51.93 -0.42 0.87 16 39 H 0.09 1.28 7.42 -51.93 -0.39 0.89 16 40 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.09 1.26 7.12 -51.93 -0.37 0.89 16 42 H 0.07 0.55 6.44 -51.93 -0.33 0.21 16 43 H 0.12 0.92 7.40 -51.93 -0.38 0.54 16 44 H 0.11 0.63 7.84 -51.92 -0.41 0.22 16 45 H 0.15 0.64 7.95 -52.49 -0.42 0.22 16 46 H 0.15 0.73 8.06 -52.48 -0.42 0.31 16 47 H 0.17 1.41 8.06 -52.49 -0.42 0.99 16 LS Contribution 395.31 15.07 5.96 5.96 Total: -1.00 -34.49 395.31 -7.66 -42.16 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: -7.22 Total: -3.48 kcal Atomic # 6 Polarization: 11.60 SS G_CDS: -0.66 Total: 10.94 kcal Atomic # 7 Polarization: -54.44 SS G_CDS: -0.54 Total: -54.98 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: -0.22 Total: -16.25 kcal Atomic # 9 Polarization: -1.26 SS G_CDS: 0.04 Total: -1.22 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.03 Total: 16.89 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.49 -7.66 -42.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264664840.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.527 kcal (2) G-P(sol) polarization free energy of solvation -34.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds