Wall clock time and date at job start Tue Mar 31 2020 23:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36936 * 119.99759 * 2 1 4 4 H 1.07998 * 120.00145 * 202.67956 * 3 2 1 5 5 C 1.38818 * 120.00417 * 22.68127 * 3 2 1 6 6 N 1.31623 * 119.99591 * 11.49237 * 5 3 2 7 7 Si 1.86790 * 120.00201 * 191.49281 * 5 3 2 8 8 H 1.48509 * 109.47295 * 60.00203 * 7 5 3 9 9 H 1.48498 * 109.46987 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47282 * 299.99959 * 7 5 3 11 11 C 1.46502 * 120.00148 * 180.02562 * 2 1 3 12 12 C 1.53007 * 109.46961 * 269.99725 * 11 2 1 13 13 O 1.42901 * 109.46914 * 65.00127 * 12 11 2 14 14 C 1.42896 * 113.99625 * 179.97438 * 13 12 11 15 15 C 1.52999 * 109.46976 * 180.02562 * 14 13 12 16 16 N 1.46494 * 109.47261 * 64.99964 * 15 14 13 17 17 C 1.46501 * 120.00208 * 270.00155 * 16 15 14 18 18 C 1.34780 * 120.00005 * 90.00072 * 16 15 14 19 19 O 1.21279 * 120.00013 * 0.02562 * 18 16 15 20 20 C 1.50701 * 120.00101 * 180.02562 * 18 16 15 21 21 C 1.50697 * 109.46971 * 179.97438 * 20 18 16 22 22 C 1.38235 * 119.58954 * 125.00094 * 21 20 18 23 23 C 1.38586 * 119.18971 * 179.97438 * 22 21 20 24 24 C 1.38873 * 118.40157 * 0.25032 * 23 22 21 25 25 F 1.35100 * 120.45093 * 179.74321 * 24 23 22 26 26 C 1.38430 * 119.11016 * 359.52487 * 24 23 22 27 27 N 1.31847 * 119.59162 * 305.01701 * 21 20 18 28 28 H 1.09010 * 109.47022 * 273.92918 * 1 2 3 29 29 H 1.08998 * 109.47746 * 33.93018 * 1 2 3 30 30 H 1.08998 * 109.47252 * 153.93705 * 1 2 3 31 31 H 0.97000 * 119.99759 * 179.97438 * 6 5 3 32 32 H 1.09004 * 109.46837 * 149.99790 * 11 2 1 33 33 H 1.08996 * 109.46872 * 29.99765 * 11 2 1 34 34 H 1.09004 * 109.46862 * 304.99946 * 12 11 2 35 35 H 1.09001 * 109.46920 * 185.00124 * 12 11 2 36 36 H 1.08996 * 109.47379 * 59.99995 * 14 13 12 37 37 H 1.08999 * 109.47133 * 299.99936 * 14 13 12 38 38 H 1.09000 * 109.46899 * 305.00062 * 15 14 13 39 39 H 1.09003 * 109.47237 * 185.00069 * 15 14 13 40 40 H 1.09000 * 109.47422 * 269.99958 * 17 16 15 41 41 H 1.09004 * 109.47054 * 29.99681 * 17 16 15 42 42 H 1.09006 * 109.47103 * 149.99857 * 17 16 15 43 43 H 1.08997 * 109.47116 * 59.99713 * 20 18 16 44 44 H 1.09009 * 109.46670 * 299.99613 * 20 18 16 45 45 H 1.08001 * 120.40858 * 0.02562 * 22 21 20 46 46 H 1.08003 * 120.79979 * 179.97438 * 23 22 21 47 47 H 1.07997 * 119.63441 * 180.20621 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1670 1.2222 -0.3606 5 6 1.5361 2.3417 0.4636 6 7 0.3911 2.2656 1.1082 7 14 2.3354 4.0046 0.1724 8 1 2.4795 4.2358 -1.2875 9 1 1.4864 5.0716 0.7606 10 1 3.6753 4.0286 0.8120 11 6 2.1975 -1.2687 -0.0006 12 6 2.4526 -1.7110 1.4418 13 8 1.2061 -1.9944 2.0806 14 6 1.3326 -2.4189 3.4391 15 6 -0.0563 -2.6935 4.0191 16 7 -0.6648 -3.8246 3.3146 17 6 -1.4790 -3.5910 2.1194 18 6 -0.4756 -5.0804 3.7662 19 8 0.1981 -5.2738 4.7560 20 6 -1.1010 -6.2441 3.0412 21 6 -0.7381 -7.5271 3.7435 22 6 -1.7396 -8.3844 4.1594 23 6 -1.3965 -9.5623 4.8040 24 6 -0.0505 -9.8334 5.0123 25 9 0.3303 -10.9670 5.6409 26 6 0.8961 -8.9287 4.5631 27 7 0.5306 -7.8178 3.9539 28 1 -0.3633 0.0704 1.0253 29 1 -0.3634 0.8526 -0.5736 30 1 -0.3634 -0.9231 -0.4515 31 1 -0.0375 3.0732 1.4325 32 1 3.1500 -1.1381 -0.5144 33 1 1.6084 -2.0281 -0.5147 34 1 2.9643 -0.9138 1.9811 35 1 3.0734 -2.6070 1.4427 36 1 1.8213 -1.6369 4.0202 37 1 1.9300 -3.3297 3.4811 38 1 -0.6824 -1.8097 3.8963 39 1 0.0330 -2.9311 5.0791 40 1 -2.5196 -3.4480 2.4107 41 1 -1.1204 -2.7000 1.6039 42 1 -1.4029 -4.4511 1.4540 43 1 -0.7318 -6.2744 2.0161 44 1 -2.1848 -6.1275 3.0338 45 1 -2.7767 -8.1397 3.9835 46 1 -2.1577 -10.2507 5.1403 47 1 1.9453 -9.1327 4.7176 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264664840.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:48 Heat of formation + Delta-G solvation = -77.331096 kcal Electronic energy + Delta-G solvation = -29340.055213 eV Core-core repulsion = 25052.164889 eV Total energy + Delta-G solvation = -4287.890324 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -50.00153 -41.50950 -40.43255 -38.93152 -37.19466 -36.27659 -33.94384 -33.46774 -33.38610 -31.46299 -29.75781 -28.74916 -27.76479 -27.15995 -25.01372 -24.80397 -24.30900 -23.03216 -22.10884 -20.17467 -18.77156 -18.64883 -18.45697 -17.97688 -17.67176 -17.21192 -17.04915 -16.79036 -16.71252 -16.58913 -16.08443 -15.47621 -15.27188 -15.11135 -14.93501 -14.83457 -14.58405 -14.13613 -14.00437 -13.89632 -13.74950 -13.50292 -13.29125 -13.10556 -13.00473 -12.90254 -12.83530 -12.63407 -12.54251 -12.44720 -12.22036 -11.99022 -11.77256 -11.68149 -10.94261 -10.85900 -10.57960 -10.51002 -10.37705 -9.83684 -9.58785 -8.69449 -7.75793 -5.22746 -0.13522 0.15540 1.47997 1.49762 1.56050 1.69535 2.05020 2.54427 2.64643 2.91262 2.98404 3.28457 3.36746 3.58741 3.71826 3.79269 3.80282 3.93918 4.13478 4.17761 4.31561 4.38544 4.42725 4.48221 4.53708 4.55556 4.63134 4.65367 4.66513 4.77324 4.78864 4.88929 4.90074 4.97661 4.98083 5.02079 5.17974 5.19123 5.44942 5.54237 5.62419 5.69635 5.90557 6.37863 6.41105 6.52844 6.89979 7.23017 7.24233 7.96054 8.40299 9.26814 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.028975 B = 0.002014 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.134035 B =13899.610909 C =14115.406670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.194 3.806 2 N -0.612 5.612 3 C -0.262 4.262 4 H 0.069 0.931 5 C -0.054 4.054 6 N -0.933 5.933 7 Si 0.965 3.035 8 H -0.279 1.279 9 H -0.296 1.296 10 H -0.279 1.279 11 C 0.151 3.849 12 C 0.052 3.948 13 O -0.376 6.376 14 C 0.053 3.947 15 C 0.128 3.872 16 N -0.606 5.606 17 C 0.076 3.924 18 C 0.512 3.488 19 O -0.576 6.576 20 C -0.084 4.084 21 C 0.114 3.886 22 C -0.126 4.126 23 C -0.105 4.105 24 C 0.031 3.969 25 F -0.137 7.137 26 C 0.062 3.938 27 N -0.468 5.468 28 H 0.006 0.994 29 H 0.008 0.992 30 H 0.025 0.975 31 H 0.245 0.755 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.017 0.983 35 H 0.049 0.951 36 H 0.041 0.959 37 H 0.037 0.963 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.077 0.923 41 H 0.063 0.937 42 H 0.094 0.906 43 H 0.129 0.871 44 H 0.153 0.847 45 H 0.186 0.814 46 H 0.178 0.822 47 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.442 -24.137 4.388 25.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.335 5.335 3 C -0.393 4.393 4 H 0.087 0.913 5 C -0.249 4.249 6 N -0.579 5.579 7 Si 0.794 3.206 8 H -0.205 1.205 9 H -0.222 1.222 10 H -0.205 1.205 11 C 0.025 3.975 12 C -0.027 4.027 13 O -0.296 6.296 14 C -0.025 4.025 15 C 0.005 3.995 16 N -0.339 5.339 17 C -0.066 4.066 18 C 0.301 3.699 19 O -0.455 6.455 20 C -0.123 4.123 21 C -0.024 4.024 22 C -0.145 4.145 23 C -0.132 4.132 24 C 0.010 3.990 25 F -0.116 7.116 26 C -0.097 4.097 27 N -0.176 5.176 28 H 0.024 0.976 29 H 0.027 0.973 30 H 0.043 0.957 31 H 0.054 0.946 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.036 0.964 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.055 0.945 38 H 0.104 0.896 39 H 0.108 0.892 40 H 0.096 0.904 41 H 0.082 0.918 42 H 0.113 0.887 43 H 0.147 0.853 44 H 0.171 0.829 45 H 0.204 0.796 46 H 0.195 0.805 47 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -7.733 -23.533 4.574 25.189 hybrid contribution 0.603 0.566 0.841 1.180 sum -7.129 -22.966 5.415 24.650 Atomic orbital electron populations 1.20376 0.82322 0.94973 0.97374 1.44100 1.02443 1.01208 1.85778 1.19498 0.98310 0.86807 1.34652 0.91327 1.25754 0.98624 1.01598 0.98923 1.70245 1.19373 1.27170 1.41148 0.85383 0.77543 0.79940 0.77782 1.20462 1.22231 1.20518 1.21058 0.96769 0.87378 0.92335 1.23225 0.85735 0.96922 0.96823 1.87895 1.30039 1.87294 1.24329 1.22786 0.98242 0.97200 0.84306 1.21334 0.92487 0.89339 0.96338 1.47849 1.51109 1.05410 1.29485 1.22038 0.94796 1.03842 0.85929 1.20932 0.80263 0.84259 0.84436 1.90697 1.41238 1.85102 1.28505 1.20768 1.04699 0.86575 1.00296 1.21112 0.88695 0.96203 0.96433 1.22266 1.02411 0.92940 0.96909 1.22000 0.94533 0.98785 0.97850 1.18996 0.95219 0.85358 0.99463 1.91505 1.92027 1.48134 1.79887 1.23037 1.00990 0.89345 0.96312 1.67470 1.21089 1.16601 1.12468 0.97604 0.97312 0.95701 0.94561 0.91444 0.91786 0.96423 0.93256 0.94046 0.94493 0.89590 0.89170 0.90416 0.91807 0.88722 0.85321 0.82899 0.79640 0.80486 0.81365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 9.56 8.61 127.77 1.10 10.66 16 2 N -0.61 -30.58 2.89 -726.91 -2.10 -32.68 16 3 C -0.26 -14.38 9.67 84.04 0.81 -13.57 16 4 H 0.07 3.64 7.85 -2.91 -0.02 3.61 16 5 C -0.05 -3.03 5.12 84.86 0.43 -2.59 16 6 N -0.93 -55.17 10.62 21.65 0.23 -54.94 16 7 Si 0.96 45.32 29.57 68.60 2.03 47.35 16 8 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 9 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 10 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 11 C 0.15 6.03 6.12 86.38 0.53 6.56 16 12 C 0.05 2.00 6.28 71.98 0.45 2.46 16 13 O -0.38 -14.35 8.72 -148.98 -1.30 -15.65 16 14 C 0.05 1.78 6.28 71.98 0.45 2.24 16 15 C 0.13 3.73 5.81 86.38 0.50 4.23 16 16 N -0.61 -14.85 2.84 -846.75 -2.40 -17.25 16 17 C 0.08 1.42 10.06 127.77 1.29 2.70 16 18 C 0.51 12.83 7.61 87.66 0.67 13.50 16 19 O -0.58 -19.58 14.91 -3.03 -0.05 -19.62 16 20 C -0.08 -1.27 4.65 29.10 0.14 -1.13 16 21 C 0.11 2.13 5.76 42.55 0.25 2.38 16 22 C -0.13 -1.49 9.71 22.35 0.22 -1.27 16 23 C -0.11 -1.33 10.16 22.51 0.23 -1.10 16 24 C 0.03 0.56 7.35 22.47 0.17 0.72 16 25 F -0.14 -2.53 17.28 44.97 0.78 -1.75 16 26 C 0.06 1.32 11.17 84.73 0.95 2.27 16 27 N -0.47 -11.64 9.22 -183.71 -1.69 -13.34 16 28 H 0.01 0.31 7.43 -2.38 -0.02 0.29 16 29 H 0.01 0.44 7.20 -2.39 -0.02 0.43 16 30 H 0.02 1.03 7.85 -2.39 -0.02 1.01 16 31 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 32 H 0.07 2.53 8.03 -2.38 -0.02 2.51 16 33 H 0.06 2.28 7.86 -2.39 -0.02 2.27 16 34 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.09 2.53 8.07 -2.39 -0.02 2.51 16 39 H 0.09 2.61 7.42 -2.39 -0.02 2.59 16 40 H 0.08 1.08 8.14 -2.39 -0.02 1.07 16 41 H 0.06 1.63 7.12 -2.38 -0.02 1.61 16 42 H 0.09 1.21 6.44 -2.38 -0.02 1.20 16 43 H 0.13 1.62 7.40 -2.39 -0.02 1.60 16 44 H 0.15 0.95 7.84 -2.38 -0.02 0.93 16 45 H 0.19 0.60 7.95 -2.91 -0.02 0.58 16 46 H 0.18 1.07 8.06 -2.91 -0.02 1.05 16 47 H 0.17 3.11 8.06 -2.91 -0.02 3.09 16 Total: -1.00 -76.95 395.31 4.63 -72.32 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: 0.96 Total: 7.51 kcal Atomic # 6 Polarization: 19.87 SS G_CDS: 8.17 Total: 28.04 kcal Atomic # 7 Polarization: -112.24 SS G_CDS: -5.96 Total: -118.20 kcal Atomic # 8 Polarization: -33.93 SS G_CDS: -1.34 Total: -35.27 kcal Atomic # 9 Polarization: -2.53 SS G_CDS: 0.78 Total: -1.75 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -76.95 4.63 -72.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264664840.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.009 kcal (2) G-P(sol) polarization free energy of solvation -76.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds