Wall clock time and date at job start Tue Mar 31 2020 22:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47212 * 2 1 4 4 C 1.53010 * 109.46821 * 119.99276 * 2 1 3 5 5 N 1.46506 * 109.46802 * 174.99905 * 4 2 1 6 6 C 1.36934 * 119.99451 * 180.02562 * 5 4 2 7 7 H 1.07994 * 120.00288 * 0.02562 * 6 5 4 8 8 C 1.38813 * 119.99491 * 180.02562 * 6 5 4 9 9 N 1.31616 * 120.00181 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 119.99900 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47139 * 90.00168 * 10 8 6 12 12 H 1.48501 * 109.47030 * 210.00084 * 10 8 6 13 13 H 1.48495 * 109.47194 * 330.00022 * 10 8 6 14 14 N 1.46494 * 109.47150 * 239.99205 * 2 1 3 15 15 C 1.46493 * 120.00444 * 300.27563 * 14 2 1 16 16 C 1.34784 * 119.99635 * 120.00274 * 14 2 1 17 17 O 1.21279 * 119.99925 * 359.97438 * 16 14 2 18 18 C 1.50700 * 119.99961 * 180.02562 * 16 14 2 19 19 C 1.50697 * 109.47266 * 180.02562 * 18 16 14 20 20 C 1.33640 * 122.75152 * 85.02229 * 19 18 16 21 21 S 1.76201 * 107.92278 * 180.02562 * 20 19 18 22 22 C 1.70977 * 90.28401 * 0.02562 * 21 20 19 23 23 C 1.50695 * 124.91788 * 180.02562 * 22 21 20 24 24 C 1.52993 * 109.47306 * 239.97453 * 23 22 21 25 25 C 1.53006 * 109.47020 * 359.97261 * 23 22 21 26 26 C 1.52999 * 109.47459 * 119.97192 * 23 22 21 27 27 N 1.29035 * 110.16752 * 359.73312 * 22 21 20 28 28 H 1.08998 * 109.46756 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47135 * 300.00248 * 1 2 3 30 30 H 1.08998 * 109.46853 * 60.00323 * 1 2 3 31 31 H 1.08990 * 109.47041 * 295.00089 * 4 2 1 32 32 H 1.08999 * 109.46790 * 55.00665 * 4 2 1 33 33 H 0.96996 * 119.99654 * 0.02562 * 5 4 2 34 34 H 0.97003 * 120.00001 * 179.97438 * 9 8 6 35 35 H 1.09000 * 109.47297 * 269.72722 * 15 14 2 36 36 H 1.09002 * 109.47192 * 29.72648 * 15 14 2 37 37 H 1.08996 * 109.47342 * 149.72358 * 15 14 2 38 38 H 1.09004 * 109.46932 * 300.00223 * 18 16 14 39 39 H 1.08997 * 109.47392 * 59.99562 * 18 16 14 40 40 H 1.07996 * 126.03836 * 0.02562 * 20 19 18 41 41 H 1.09007 * 109.47347 * 59.99725 * 24 23 22 42 42 H 1.08993 * 109.47626 * 179.97438 * 24 23 22 43 43 H 1.09007 * 109.47319 * 300.00118 * 24 23 22 44 44 H 1.08999 * 109.47060 * 59.99979 * 25 23 22 45 45 H 1.08992 * 109.46868 * 179.97438 * 25 23 22 46 46 H 1.08998 * 109.47035 * 300.00147 * 25 23 22 47 47 H 1.09000 * 109.47179 * 60.00120 * 26 23 22 48 48 H 1.08999 * 109.47576 * 180.02562 * 26 23 22 49 49 H 1.08999 * 109.47023 * 300.00267 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2494 5 7 3.5001 -0.8263 1.1908 6 6 4.1837 -1.4387 2.2070 7 1 3.6466 -1.8444 3.0515 8 6 5.5672 -1.5378 2.1517 9 7 6.2218 -1.0438 1.1223 10 14 6.5000 -2.3725 3.5383 11 1 6.6326 -3.8219 3.2435 12 1 7.8502 -1.7668 3.6615 13 1 5.7586 -2.1924 4.8123 14 7 2.0184 -0.6907 -1.1960 15 6 1.6595 -2.0915 -1.4308 16 6 2.7933 -0.0358 -2.0832 17 8 3.0859 1.1255 -1.8916 18 6 3.2952 -0.7461 -3.3139 19 6 4.1331 0.2008 -4.1339 20 6 5.4338 0.4014 -3.9018 21 16 6.0201 1.5740 -5.0791 22 6 4.4578 1.6784 -5.7659 23 6 4.0865 2.5525 -6.9358 24 6 2.9980 3.5396 -6.5098 25 6 5.3201 3.3257 -7.4066 26 6 3.5645 1.6800 -8.0791 27 7 3.6440 0.8957 -5.1412 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.7516 -0.1581 2.1370 32 1 1.6054 -1.7197 1.2953 33 1 3.9824 -0.4622 0.4321 34 1 7.1886 -1.1128 1.0838 35 1 2.4098 -2.7396 -0.9779 36 1 0.6859 -2.2967 -0.9858 37 1 1.6158 -2.2805 -2.5034 38 1 3.9005 -1.6028 -3.0175 39 1 2.4473 -1.0884 -3.9071 40 1 6.0217 -0.0715 -3.1292 41 1 3.3698 4.1613 -5.6953 42 1 2.7297 4.1722 -7.3558 43 1 2.1191 2.9889 -6.1744 44 1 6.0956 2.6225 -7.7101 45 1 5.0516 3.9576 -8.2531 46 1 5.6919 3.9473 -6.5921 47 1 2.6857 1.1292 -7.7438 48 1 3.2964 2.3122 -8.9256 49 1 4.3401 0.9768 -8.3827 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268089310.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:56 Heat of formation + Delta-G solvation = 10.662882 kcal Electronic energy + Delta-G solvation = -28008.819951 eV Core-core repulsion = 24290.958508 eV Total energy + Delta-G solvation = -3717.861443 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.25310 -39.24858 -36.96191 -36.13411 -33.97655 -32.31773 -31.04060 -29.98998 -27.81444 -27.61835 -27.41572 -26.58389 -25.56902 -24.89343 -22.66037 -21.44099 -19.91816 -19.19263 -18.59062 -17.37419 -17.04952 -16.89362 -15.83510 -15.58298 -15.08620 -14.84278 -14.60330 -14.23101 -14.03444 -13.73809 -13.54860 -13.33817 -13.17846 -12.97545 -12.87770 -12.46786 -12.40938 -12.33002 -12.24295 -12.01428 -11.86648 -11.85692 -11.78900 -11.53571 -11.41794 -11.19296 -11.17078 -11.02009 -10.83405 -10.76158 -10.40381 -10.03567 -9.68433 -9.45801 -9.39704 -9.14891 -8.85873 -8.51548 -8.16919 -6.88044 -5.72707 -3.01285 0.93051 1.54522 1.93329 2.86253 3.11697 3.43534 3.48785 3.50657 3.51604 3.96600 4.58346 4.60526 4.71681 4.79246 4.94580 5.11420 5.23842 5.33541 5.34283 5.40377 5.43092 5.45897 5.50806 5.55412 5.58332 5.63605 5.65841 5.68485 5.71858 5.75894 5.77918 5.88969 5.93397 6.00781 6.08776 6.13267 6.15479 6.17483 6.22478 6.36579 6.42028 6.51887 6.78147 7.06010 7.71221 7.81378 7.92744 8.45233 8.65016 9.56856 10.16176 10.52019 11.49523 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013029 B = 0.003178 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.460342 B = 8807.876486 C =10281.282279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.127 3.873 3 H 0.098 0.902 4 C 0.144 3.856 5 N -0.727 5.727 6 C -0.238 4.238 7 H 0.069 0.931 8 C -0.013 4.013 9 N -0.930 5.930 10 Si 0.905 3.095 11 H -0.291 1.291 12 H -0.292 1.292 13 H -0.283 1.283 14 N -0.598 5.598 15 C 0.078 3.922 16 C 0.524 3.476 17 O -0.533 6.533 18 C -0.063 4.063 19 C 0.085 3.915 20 C -0.232 4.232 21 S 0.114 5.886 22 C 0.051 3.949 23 C 0.013 3.987 24 C -0.134 4.134 25 C -0.153 4.153 26 C -0.132 4.132 27 N -0.459 5.459 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.054 0.946 31 H 0.026 0.974 32 H 0.020 0.980 33 H 0.386 0.614 34 H 0.253 0.747 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.111 0.889 39 H 0.105 0.895 40 H 0.181 0.819 41 H 0.057 0.943 42 H 0.062 0.938 43 H 0.066 0.934 44 H 0.062 0.938 45 H 0.072 0.928 46 H 0.063 0.937 47 H 0.066 0.934 48 H 0.062 0.938 49 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.471 3.647 -18.963 20.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.023 3.977 3 H 0.116 0.884 4 C 0.016 3.984 5 N -0.372 5.372 6 C -0.370 4.370 7 H 0.087 0.913 8 C -0.209 4.209 9 N -0.578 5.578 10 Si 0.737 3.263 11 H -0.218 1.218 12 H -0.218 1.218 13 H -0.209 1.209 14 N -0.332 5.332 15 C -0.065 4.065 16 C 0.311 3.689 17 O -0.409 6.409 18 C -0.106 4.106 19 C -0.046 4.046 20 C -0.371 4.371 21 S 0.371 5.629 22 C -0.228 4.228 23 C 0.010 3.990 24 C -0.192 4.192 25 C -0.211 4.211 26 C -0.191 4.191 27 N -0.173 5.173 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.044 0.956 32 H 0.038 0.962 33 H 0.220 0.780 34 H 0.063 0.937 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.129 0.871 39 H 0.123 0.877 40 H 0.198 0.802 41 H 0.076 0.924 42 H 0.081 0.919 43 H 0.085 0.915 44 H 0.081 0.919 45 H 0.091 0.909 46 H 0.082 0.918 47 H 0.085 0.915 48 H 0.081 0.919 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.827 4.615 -19.055 20.761 hybrid contribution 0.310 -1.159 1.363 1.815 sum -6.517 3.457 -17.693 19.169 Atomic orbital electron populations 1.22061 0.95336 1.01960 1.02017 1.21352 0.93120 0.98486 0.84706 0.88352 1.20999 0.87094 0.96709 0.93624 1.42298 0.99723 1.70032 1.25142 1.19214 0.89435 1.29166 0.99151 0.91339 1.24726 0.96409 1.01736 0.98065 1.69685 1.07019 1.50851 1.30267 0.86216 0.79467 0.78946 0.81706 1.21832 1.21826 1.20852 1.47613 1.50820 1.12295 1.22439 1.21748 1.01440 0.82367 1.00931 1.20193 0.77975 0.86894 0.83821 1.90695 1.56859 1.17003 1.76359 1.20186 0.99904 0.96953 0.93555 1.19398 0.91204 0.99244 0.94731 1.26933 0.99440 1.05062 1.05617 1.83776 1.14182 1.39339 1.25653 1.26873 0.93002 1.01071 1.01828 1.19165 0.96639 0.93194 0.90050 1.21828 0.98024 0.98076 1.01299 1.22016 0.96551 1.00458 1.02097 1.21821 1.01686 0.99255 0.96326 1.65860 1.36208 1.07450 1.07770 0.92369 0.91483 0.92664 0.95590 0.96204 0.77958 0.93670 0.91639 0.91248 0.91741 0.87093 0.87716 0.80199 0.92409 0.91911 0.91492 0.91865 0.90917 0.91758 0.91504 0.91882 0.92595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.07 9.17 37.16 0.34 -1.73 16 2 C 0.13 2.24 2.80 -67.93 -0.19 2.05 16 3 H 0.10 2.02 6.90 -51.93 -0.36 1.66 16 4 C 0.14 2.96 5.56 -4.03 -0.02 2.94 16 5 N -0.73 -18.93 5.43 -59.91 -0.33 -19.25 16 6 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 7 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 8 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 9 N -0.93 -28.43 13.06 55.49 0.72 -27.70 16 10 Si 0.91 22.64 29.55 -169.99 -5.02 17.62 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 12 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 13 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 14 N -0.60 -10.12 2.24 -173.94 -0.39 -10.51 16 15 C 0.08 1.04 9.41 59.84 0.56 1.61 16 16 C 0.52 9.79 7.37 -10.98 -0.08 9.70 16 17 O -0.53 -12.12 15.36 5.56 0.09 -12.04 16 18 C -0.06 -0.97 4.67 -29.04 -0.14 -1.10 16 19 C 0.09 1.41 5.23 -84.23 -0.44 0.97 16 20 C -0.23 -3.79 11.14 29.12 0.32 -3.46 16 21 S 0.11 1.54 21.57 -107.50 -2.32 -0.78 16 22 C 0.05 0.70 5.78 -13.46 -0.08 0.62 16 23 C 0.01 0.14 0.99 -155.66 -0.15 -0.02 16 24 C -0.13 -1.36 8.45 37.15 0.31 -1.05 16 25 C -0.15 -1.26 7.54 37.16 0.28 -0.98 16 26 C -0.13 -1.18 8.45 37.16 0.31 -0.86 16 27 N -0.46 -7.24 10.51 -8.06 -0.08 -7.32 16 28 H 0.06 0.69 6.65 -51.93 -0.35 0.34 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.02 0.40 7.84 -51.93 -0.41 -0.01 16 33 H 0.39 10.88 7.06 -40.82 -0.29 10.59 16 34 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.07 0.80 6.41 -51.93 -0.33 0.46 16 37 H 0.06 0.67 6.44 -51.93 -0.33 0.34 16 38 H 0.11 1.57 8.11 -51.93 -0.42 1.15 16 39 H 0.10 1.33 7.39 -51.93 -0.38 0.95 16 40 H 0.18 3.01 8.06 -52.49 -0.42 2.59 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 44 H 0.06 0.50 7.92 -51.93 -0.41 0.09 16 45 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.06 0.56 7.92 -51.93 -0.41 0.14 16 47 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 407.53 15.07 6.14 6.14 Total: -1.00 -34.79 407.53 -8.72 -43.51 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: -8.31 Total: 9.04 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: 0.79 Total: 1.28 kcal Atomic # 7 Polarization: -64.71 SS G_CDS: -0.08 Total: -64.78 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: 0.09 Total: -12.04 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Atomic # 16 Polarization: 1.54 SS G_CDS: -2.32 Total: -0.78 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -34.79 -8.72 -43.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268089310.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.173 kcal (2) G-P(sol) polarization free energy of solvation -34.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds