Wall clock time and date at job start Tue Mar 31 2020 22:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47212 * 2 1 4 4 C 1.53010 * 109.46821 * 119.99276 * 2 1 3 5 5 N 1.46506 * 109.46802 * 174.99905 * 4 2 1 6 6 C 1.36934 * 119.99451 * 180.02562 * 5 4 2 7 7 H 1.07994 * 120.00288 * 0.02562 * 6 5 4 8 8 C 1.38813 * 119.99491 * 180.02562 * 6 5 4 9 9 N 1.31616 * 120.00181 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 119.99900 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47139 * 90.00168 * 10 8 6 12 12 H 1.48501 * 109.47030 * 210.00084 * 10 8 6 13 13 H 1.48495 * 109.47194 * 330.00022 * 10 8 6 14 14 N 1.46494 * 109.47150 * 239.99205 * 2 1 3 15 15 C 1.46493 * 120.00444 * 300.27563 * 14 2 1 16 16 C 1.34784 * 119.99635 * 120.00274 * 14 2 1 17 17 O 1.21279 * 119.99925 * 359.97438 * 16 14 2 18 18 C 1.50700 * 119.99961 * 180.02562 * 16 14 2 19 19 C 1.50697 * 109.47266 * 180.02562 * 18 16 14 20 20 C 1.33640 * 122.75152 * 85.02229 * 19 18 16 21 21 S 1.76201 * 107.92278 * 180.02562 * 20 19 18 22 22 C 1.70977 * 90.28401 * 0.02562 * 21 20 19 23 23 C 1.50695 * 124.91788 * 180.02562 * 22 21 20 24 24 C 1.52993 * 109.47306 * 239.97453 * 23 22 21 25 25 C 1.53006 * 109.47020 * 359.97261 * 23 22 21 26 26 C 1.52999 * 109.47459 * 119.97192 * 23 22 21 27 27 N 1.29035 * 110.16752 * 359.73312 * 22 21 20 28 28 H 1.08998 * 109.46756 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47135 * 300.00248 * 1 2 3 30 30 H 1.08998 * 109.46853 * 60.00323 * 1 2 3 31 31 H 1.08990 * 109.47041 * 295.00089 * 4 2 1 32 32 H 1.08999 * 109.46790 * 55.00665 * 4 2 1 33 33 H 0.96996 * 119.99654 * 0.02562 * 5 4 2 34 34 H 0.97003 * 120.00001 * 179.97438 * 9 8 6 35 35 H 1.09000 * 109.47297 * 269.72722 * 15 14 2 36 36 H 1.09002 * 109.47192 * 29.72648 * 15 14 2 37 37 H 1.08996 * 109.47342 * 149.72358 * 15 14 2 38 38 H 1.09004 * 109.46932 * 300.00223 * 18 16 14 39 39 H 1.08997 * 109.47392 * 59.99562 * 18 16 14 40 40 H 1.07996 * 126.03836 * 0.02562 * 20 19 18 41 41 H 1.09007 * 109.47347 * 59.99725 * 24 23 22 42 42 H 1.08993 * 109.47626 * 179.97438 * 24 23 22 43 43 H 1.09007 * 109.47319 * 300.00118 * 24 23 22 44 44 H 1.08999 * 109.47060 * 59.99979 * 25 23 22 45 45 H 1.08992 * 109.46868 * 179.97438 * 25 23 22 46 46 H 1.08998 * 109.47035 * 300.00147 * 25 23 22 47 47 H 1.09000 * 109.47179 * 60.00120 * 26 23 22 48 48 H 1.08999 * 109.47576 * 180.02562 * 26 23 22 49 49 H 1.08999 * 109.47023 * 300.00267 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2494 5 7 3.5001 -0.8263 1.1908 6 6 4.1837 -1.4387 2.2070 7 1 3.6466 -1.8444 3.0515 8 6 5.5672 -1.5378 2.1517 9 7 6.2218 -1.0438 1.1223 10 14 6.5000 -2.3725 3.5383 11 1 6.6326 -3.8219 3.2435 12 1 7.8502 -1.7668 3.6615 13 1 5.7586 -2.1924 4.8123 14 7 2.0184 -0.6907 -1.1960 15 6 1.6595 -2.0915 -1.4308 16 6 2.7933 -0.0358 -2.0832 17 8 3.0859 1.1255 -1.8916 18 6 3.2952 -0.7461 -3.3139 19 6 4.1331 0.2008 -4.1339 20 6 5.4338 0.4014 -3.9018 21 16 6.0201 1.5740 -5.0791 22 6 4.4578 1.6784 -5.7659 23 6 4.0865 2.5525 -6.9358 24 6 2.9980 3.5396 -6.5098 25 6 5.3201 3.3257 -7.4066 26 6 3.5645 1.6800 -8.0791 27 7 3.6440 0.8957 -5.1412 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.7516 -0.1581 2.1370 32 1 1.6054 -1.7197 1.2953 33 1 3.9824 -0.4622 0.4321 34 1 7.1886 -1.1128 1.0838 35 1 2.4098 -2.7396 -0.9779 36 1 0.6859 -2.2967 -0.9858 37 1 1.6158 -2.2805 -2.5034 38 1 3.9005 -1.6028 -3.0175 39 1 2.4473 -1.0884 -3.9071 40 1 6.0217 -0.0715 -3.1292 41 1 3.3698 4.1613 -5.6953 42 1 2.7297 4.1722 -7.3558 43 1 2.1191 2.9889 -6.1744 44 1 6.0956 2.6225 -7.7101 45 1 5.0516 3.9576 -8.2531 46 1 5.6919 3.9473 -6.5921 47 1 2.6857 1.1292 -7.7438 48 1 3.2964 2.3122 -8.9256 49 1 4.3401 0.9768 -8.3827 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268089310.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:55 Heat of formation + Delta-G solvation = -11.624041 kcal Electronic energy + Delta-G solvation = -28009.786384 eV Core-core repulsion = 24290.958508 eV Total energy + Delta-G solvation = -3718.827876 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.51487 -40.53188 -38.03346 -37.50345 -35.84218 -33.87014 -32.55936 -31.59377 -29.03300 -28.31630 -28.16452 -27.79138 -27.35252 -25.99220 -24.52251 -22.85611 -21.06258 -20.28510 -19.97288 -19.10838 -18.53096 -18.22637 -17.20537 -16.73546 -16.62077 -16.40435 -15.76966 -15.39732 -15.25012 -15.14523 -15.07838 -14.70340 -14.33177 -14.27292 -14.04694 -13.88121 -13.74752 -13.35019 -13.26855 -13.08541 -13.04966 -12.98711 -12.91611 -12.78150 -12.60928 -12.53246 -12.42970 -12.21283 -12.14836 -11.96884 -11.88486 -11.80907 -11.72892 -11.01200 -10.83377 -10.58855 -10.30425 -9.68258 -9.56317 -9.00512 -7.94198 -5.23917 -0.23599 0.42437 0.77532 1.44337 1.46581 1.54897 1.60827 1.71305 2.23217 2.54379 2.96655 3.38434 3.60206 3.68545 3.89769 3.96225 3.97668 4.05777 4.11863 4.20281 4.31345 4.34722 4.39790 4.44515 4.47581 4.66582 4.70012 4.75154 4.78516 4.79969 4.84988 4.85418 4.90509 4.96009 4.97675 4.99851 5.04044 5.11403 5.15635 5.26564 5.30922 5.36958 5.42087 5.46979 5.68292 6.25350 6.46026 6.76413 7.23433 7.32131 8.08272 8.32203 9.28639 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013029 B = 0.003178 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.460342 B = 8807.876486 C =10281.282279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.130 3.870 3 H 0.062 0.938 4 C 0.143 3.857 5 N -0.742 5.742 6 C -0.244 4.244 7 H 0.077 0.923 8 C -0.076 4.076 9 N -0.967 5.967 10 Si 0.974 3.026 11 H -0.284 1.284 12 H -0.299 1.299 13 H -0.270 1.270 14 N -0.597 5.597 15 C 0.074 3.926 16 C 0.515 3.485 17 O -0.585 6.585 18 C -0.057 4.057 19 C 0.077 3.923 20 C -0.271 4.271 21 S 0.148 5.852 22 C 0.053 3.947 23 C 0.009 3.991 24 C -0.131 4.131 25 C -0.152 4.152 26 C -0.127 4.127 27 N -0.480 5.480 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.060 0.940 31 H 0.027 0.973 32 H 0.038 0.962 33 H 0.371 0.629 34 H 0.248 0.752 35 H 0.044 0.956 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.118 0.882 39 H 0.134 0.866 40 H 0.164 0.836 41 H 0.042 0.958 42 H 0.093 0.907 43 H 0.047 0.953 44 H 0.067 0.933 45 H 0.100 0.900 46 H 0.056 0.944 47 H 0.051 0.949 48 H 0.090 0.910 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.995 3.065 -20.183 22.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.026 3.974 3 H 0.080 0.920 4 C 0.016 3.984 5 N -0.384 5.384 6 C -0.375 4.375 7 H 0.095 0.905 8 C -0.268 4.268 9 N -0.618 5.618 10 Si 0.803 3.197 11 H -0.211 1.211 12 H -0.226 1.226 13 H -0.195 1.195 14 N -0.329 5.329 15 C -0.068 4.068 16 C 0.304 3.696 17 O -0.465 6.465 18 C -0.099 4.099 19 C -0.055 4.055 20 C -0.410 4.410 21 S 0.405 5.595 22 C -0.226 4.226 23 C 0.005 3.995 24 C -0.189 4.189 25 C -0.210 4.210 26 C -0.186 4.186 27 N -0.194 5.194 28 H 0.100 0.900 29 H 0.098 0.902 30 H 0.080 0.920 31 H 0.045 0.955 32 H 0.056 0.944 33 H 0.203 0.797 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.113 0.887 37 H 0.115 0.885 38 H 0.136 0.864 39 H 0.152 0.848 40 H 0.182 0.818 41 H 0.061 0.939 42 H 0.112 0.888 43 H 0.066 0.934 44 H 0.086 0.914 45 H 0.118 0.882 46 H 0.076 0.924 47 H 0.071 0.929 48 H 0.109 0.891 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.407 3.991 -20.252 22.287 hybrid contribution 0.728 -0.924 1.734 2.095 sum -7.679 3.067 -18.517 20.280 Atomic orbital electron populations 1.21967 0.91313 1.03765 1.02979 1.21238 0.96012 0.96167 0.83963 0.92013 1.21195 0.84219 0.97845 0.95151 1.42512 1.01970 1.69758 1.24172 1.19632 0.89966 1.28317 0.99614 0.90492 1.25578 0.97477 1.03115 1.00610 1.69869 1.06794 1.52716 1.32373 0.85129 0.77527 0.77872 0.79136 1.21055 1.22586 1.19533 1.47755 1.50005 1.13605 1.21540 1.21983 1.01890 0.79611 1.03286 1.20801 0.77487 0.86517 0.84827 1.90660 1.58787 1.19368 1.77711 1.20205 1.00850 0.96509 0.92349 1.19627 0.91315 0.99481 0.95040 1.26987 1.00092 1.07057 1.06890 1.83522 1.13816 1.37900 1.24220 1.27707 0.92792 1.00158 1.01898 1.19448 0.97750 0.93083 0.89213 1.21818 0.97095 0.97984 1.02042 1.22043 0.95565 1.00573 1.02816 1.21799 1.01018 0.99372 0.96399 1.65928 1.36730 1.08486 1.08248 0.90037 0.90246 0.92050 0.95523 0.94369 0.79706 0.94278 0.93709 0.88667 0.88531 0.86412 0.84827 0.81812 0.93851 0.88811 0.93352 0.91420 0.88169 0.92444 0.92935 0.89122 0.92438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.48 9.17 71.98 0.66 -2.82 16 2 C 0.13 4.59 2.80 45.00 0.13 4.72 16 3 H 0.06 2.65 6.90 -2.39 -0.02 2.63 16 4 C 0.14 5.83 5.56 86.38 0.48 6.31 16 5 N -0.74 -39.34 5.43 -343.44 -1.87 -41.21 16 6 C -0.24 -13.90 9.99 84.03 0.84 -13.06 16 7 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 8 C -0.08 -4.44 5.50 84.86 0.47 -3.97 16 9 N -0.97 -61.00 13.06 21.65 0.28 -60.72 16 10 Si 0.97 47.05 29.55 68.60 2.03 49.07 16 11 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 12 H -0.30 -14.67 7.11 99.48 0.71 -13.97 16 13 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 14 N -0.60 -20.11 2.24 -822.59 -1.85 -21.96 16 15 C 0.07 1.84 9.41 127.77 1.20 3.04 16 16 C 0.51 19.83 7.37 87.66 0.65 20.48 16 17 O -0.59 -28.15 15.36 -3.03 -0.05 -28.20 16 18 C -0.06 -1.77 4.67 29.10 0.14 -1.63 16 19 C 0.08 2.63 5.23 41.52 0.22 2.85 16 20 C -0.27 -9.43 11.14 66.78 0.74 -8.69 16 21 S 0.15 4.09 21.57 -56.49 -1.22 2.87 16 22 C 0.05 1.45 5.78 88.52 0.51 1.96 16 23 C 0.01 0.17 0.99 -52.93 -0.05 0.12 16 24 C -0.13 -2.52 8.45 71.98 0.61 -1.91 16 25 C -0.15 -2.17 7.54 71.98 0.54 -1.63 16 26 C -0.13 -2.00 8.45 71.98 0.61 -1.39 16 27 N -0.48 -15.35 10.51 -179.40 -1.89 -17.24 16 28 H 0.08 1.63 6.65 -2.39 -0.02 1.61 16 29 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.04 1.44 7.84 -2.39 -0.02 1.42 16 33 H 0.37 21.78 7.06 -92.71 -0.65 21.12 16 34 H 0.25 15.22 8.31 -92.71 -0.77 14.45 16 35 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.09 1.87 6.41 -2.39 -0.02 1.85 16 37 H 0.10 1.77 6.44 -2.39 -0.02 1.76 16 38 H 0.12 3.43 8.11 -2.38 -0.02 3.41 16 39 H 0.13 3.25 7.39 -2.39 -0.02 3.23 16 40 H 0.16 6.07 8.06 -2.91 -0.02 6.05 16 41 H 0.04 0.94 8.14 -2.38 -0.02 0.93 16 42 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 44 H 0.07 0.91 7.92 -2.39 -0.02 0.90 16 45 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 46 H 0.06 0.91 7.92 -2.39 -0.02 0.89 16 47 H 0.05 0.98 8.14 -2.39 -0.02 0.97 16 48 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 49 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -78.78 407.53 3.46 -75.31 By element: Atomic # 1 Polarization: 37.41 SS G_CDS: 0.28 Total: 37.69 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: 7.74 Total: 4.38 kcal Atomic # 7 Polarization: -135.81 SS G_CDS: -5.32 Total: -141.12 kcal Atomic # 8 Polarization: -28.15 SS G_CDS: -0.05 Total: -28.20 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.03 Total: 49.07 kcal Atomic # 16 Polarization: 4.09 SS G_CDS: -1.22 Total: 2.87 kcal Total: -78.78 3.46 -75.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268089310.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.691 kcal (2) G-P(sol) polarization free energy of solvation -78.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds