Wall clock time and date at job start Tue Mar 31 2020 23:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46501 * 109.46948 * 2 1 4 4 C 1.34773 * 119.99569 * 179.97438 * 3 2 1 5 5 S 1.71204 * 120.00237 * 354.99757 * 4 3 2 6 6 N 1.34773 * 119.99826 * 175.27155 * 4 3 2 7 7 C 1.46841 * 120.38153 * 4.64776 * 6 4 3 8 8 C 1.53802 * 108.57519 * 123.09340 * 7 6 4 9 9 C 1.53188 * 108.70798 * 51.51780 * 8 7 6 10 10 C 1.52842 * 117.65913 * 89.90780 * 9 8 7 11 11 C 1.52819 * 117.71200 * 158.76195 * 9 8 7 12 12 H 1.09002 * 117.50281 * 359.86440 * 11 9 8 13 13 C 1.50699 * 117.50052 * 144.89942 * 11 9 8 14 14 O 1.21286 * 119.99930 * 95.03327 * 13 11 9 15 15 N 1.34778 * 120.00263 * 275.03128 * 13 11 9 16 16 C 1.46500 * 120.00051 * 180.02562 * 15 13 11 17 17 C 1.53000 * 109.46911 * 179.97438 * 16 15 13 18 18 C 1.50699 * 109.46862 * 180.02562 * 17 16 15 19 19 H 1.07997 * 120.00186 * 359.97438 * 18 17 16 20 20 C 1.37886 * 119.99939 * 180.02562 * 18 17 16 21 21 N 1.31514 * 119.99991 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00064 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47397 * 59.99718 * 22 20 18 24 24 H 1.48499 * 109.47114 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.47022 * 299.99888 * 22 20 18 26 26 C 1.53185 * 115.07815 * 304.43144 * 9 8 7 27 27 C 1.46843 * 120.38347 * 184.93097 * 6 4 3 28 28 H 1.08997 * 109.46750 * 60.00018 * 1 2 3 29 29 H 1.09000 * 109.46639 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47008 * 299.99991 * 1 2 3 31 31 H 1.09003 * 109.47008 * 240.00009 * 2 1 3 32 32 H 1.09004 * 109.46999 * 120.00327 * 2 1 3 33 33 H 0.96997 * 119.99743 * 0.02562 * 3 2 1 34 34 H 1.09000 * 109.58356 * 242.93106 * 7 6 4 35 35 H 1.09003 * 109.58056 * 3.33157 * 7 6 4 36 36 H 1.08995 * 109.71920 * 291.69480 * 8 7 6 37 37 H 1.08999 * 109.51562 * 171.22277 * 8 7 6 38 38 H 1.09004 * 117.50613 * 215.18476 * 10 9 8 39 39 H 1.09002 * 117.50319 * 0.22967 * 10 9 8 40 40 H 0.97003 * 120.00070 * 359.97438 * 15 13 11 41 41 H 1.08999 * 109.47349 * 299.99689 * 16 15 13 42 42 H 1.08996 * 109.47186 * 59.99930 * 16 15 13 43 43 H 1.09004 * 109.47117 * 299.99312 * 17 16 15 44 44 H 1.08994 * 109.47734 * 59.99919 * 17 16 15 45 45 H 0.96997 * 120.00187 * 180.02562 * 21 20 18 46 46 H 1.09006 * 109.58576 * 295.66014 * 26 9 8 47 47 H 1.09001 * 109.59091 * 175.23363 * 26 9 8 48 48 H 1.08998 * 109.57593 * 356.67520 * 27 6 4 49 49 H 1.09005 * 109.57829 * 117.06748 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3434 1.6275 0.0005 5 16 4.4549 0.3317 0.1305 6 7 3.7934 2.8942 -0.0957 7 6 2.8499 4.0193 -0.0990 8 6 3.2175 4.9704 1.0524 9 6 4.7085 5.3078 0.9540 10 6 5.1068 6.5263 0.1216 11 6 5.1969 6.5786 1.6483 12 1 4.4567 7.1801 2.1759 13 6 6.5713 6.5499 2.2656 14 8 7.5259 6.9600 1.6398 15 7 6.7398 6.0686 3.5132 16 6 8.0759 6.0412 4.1135 17 6 7.9896 5.4530 5.5233 18 6 9.3638 5.4254 6.1410 19 1 10.2138 5.7905 5.5837 20 6 9.5362 4.9331 7.4174 21 7 8.5012 4.4881 8.0959 22 14 11.2398 4.8983 8.1829 23 1 11.7781 6.2803 8.2557 24 1 11.1560 4.3275 9.5512 25 1 12.1394 4.0599 7.3505 26 6 5.6483 4.0983 0.9387 27 6 5.2326 3.1648 -0.2046 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.3880 2.1185 0.0004 34 1 2.9163 4.5490 -1.0493 35 1 1.8357 3.6459 0.0431 36 1 3.0146 4.4868 2.0079 37 1 2.6298 5.8848 0.9711 38 1 6.0416 6.4711 -0.4363 39 1 4.3072 7.0933 -0.3552 40 1 5.9763 5.7409 4.0139 41 1 8.7363 5.4259 3.5025 42 1 8.4710 7.0556 4.1671 43 1 7.3294 6.0688 6.1341 44 1 7.5943 4.4386 5.4702 45 1 8.6224 4.1421 8.9939 46 1 5.5763 3.5676 1.8882 47 1 6.6735 4.4339 0.7821 48 1 5.7867 2.2290 -0.1322 49 1 5.4430 3.6429 -1.1614 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274390783.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:27 Heat of formation + Delta-G solvation = -4.329963 kcal Electronic energy + Delta-G solvation = -27246.429179 eV Core-core repulsion = 23527.917598 eV Total energy + Delta-G solvation = -3718.511581 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.85453 -39.53089 -37.85011 -36.04662 -34.83092 -32.81985 -32.07059 -31.92103 -29.89413 -29.52559 -25.63547 -25.24128 -24.39402 -23.36434 -23.11841 -22.15893 -20.91544 -19.89276 -19.39101 -18.26633 -17.61741 -16.88390 -16.33161 -16.04615 -15.65417 -15.33552 -15.16033 -15.14087 -14.80736 -14.57295 -14.38114 -14.14315 -13.87764 -13.34203 -13.01595 -12.96797 -12.83847 -12.70654 -12.40457 -12.32732 -12.22396 -11.96997 -11.66896 -11.49124 -11.34406 -11.21414 -11.01341 -10.96398 -10.66856 -10.41033 -10.33467 -10.20395 -9.78948 -9.47206 -9.23129 -9.14337 -8.55020 -8.35681 -7.93176 -7.52196 -6.08188 -4.11182 1.18073 1.70802 2.35508 2.78299 2.83953 3.32624 3.36023 3.37031 3.41271 3.62850 4.02750 4.24826 4.38853 4.41318 4.43272 4.47759 4.59855 4.62364 4.73638 4.76613 4.83072 4.99092 5.11134 5.19522 5.23659 5.28875 5.32701 5.41057 5.42434 5.47557 5.50141 5.53616 5.65436 5.74357 5.86703 5.93648 6.02176 6.14868 6.32959 6.33573 6.47734 6.72562 6.89401 6.90087 7.51480 7.61655 7.89447 7.99342 8.28118 8.61954 8.94437 9.53668 11.03383 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011343 B = 0.002494 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2467.867587 B =11225.734439 C =12717.848394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.118 3.882 3 N -0.690 5.690 4 C 0.564 3.436 5 S -0.647 6.647 6 N -0.564 5.564 7 C 0.100 3.900 8 C -0.095 4.095 9 C -0.109 4.109 10 C -0.138 4.138 11 C -0.173 4.173 12 H 0.126 0.874 13 C 0.535 3.465 14 O -0.549 6.549 15 N -0.715 5.715 16 C 0.121 3.879 17 C 0.014 3.986 18 C -0.523 4.523 19 H 0.059 0.941 20 C 0.059 3.941 21 N -0.894 5.894 22 Si 0.897 3.103 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.275 1.275 26 C -0.099 4.099 27 C 0.107 3.893 28 H 0.060 0.940 29 H 0.082 0.918 30 H 0.062 0.938 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.394 0.606 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.107 0.893 39 H 0.100 0.900 40 H 0.398 0.602 41 H 0.057 0.943 42 H 0.056 0.944 43 H 0.021 0.979 44 H 0.023 0.977 45 H 0.263 0.737 46 H 0.081 0.919 47 H 0.088 0.912 48 H 0.131 0.869 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.264 -1.407 -19.505 29.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.005 4.005 3 N -0.324 5.324 4 C 0.205 3.795 5 S -0.518 6.518 6 N -0.274 5.274 7 C -0.025 4.025 8 C -0.134 4.134 9 C -0.110 4.110 10 C -0.175 4.175 11 C -0.194 4.194 12 H 0.144 0.856 13 C 0.320 3.680 14 O -0.428 6.428 15 N -0.364 5.364 16 C -0.001 4.001 17 C -0.024 4.024 18 C -0.561 4.561 19 H 0.077 0.923 20 C -0.142 4.142 21 N -0.533 5.533 22 Si 0.725 3.275 23 H -0.201 1.201 24 H -0.212 1.212 25 H -0.200 1.200 26 C -0.137 4.137 27 C -0.015 4.015 28 H 0.079 0.921 29 H 0.101 0.899 30 H 0.081 0.919 31 H 0.102 0.898 32 H 0.107 0.893 33 H 0.233 0.767 34 H 0.105 0.895 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.104 0.896 38 H 0.125 0.875 39 H 0.119 0.881 40 H 0.231 0.769 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.039 0.961 44 H 0.041 0.959 45 H 0.072 0.928 46 H 0.100 0.900 47 H 0.107 0.893 48 H 0.149 0.851 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -20.928 -2.057 -19.693 28.811 hybrid contribution -0.500 1.023 0.905 1.455 sum -21.429 -1.034 -18.788 28.517 Atomic orbital electron populations 1.22068 0.94170 1.03911 1.02400 1.21690 0.93732 0.80184 1.04880 1.45250 1.03670 1.10711 1.72734 1.22311 0.87602 0.89290 0.80284 1.93566 1.50714 1.33556 1.73968 1.47240 1.09335 1.02423 1.68403 1.22025 0.92110 0.87701 1.00689 1.21623 0.93712 0.99485 0.98532 1.21488 0.95095 0.89830 1.04607 1.23086 1.03624 0.98947 0.91825 1.22404 0.97459 1.02538 0.97015 0.85617 1.19513 0.88920 0.77706 0.81893 1.90683 1.41882 1.47957 1.62244 1.46297 1.12346 1.62462 1.15291 1.21743 0.81045 1.00835 0.96461 1.19307 0.98185 0.96334 0.88547 1.21005 0.93304 1.42028 0.99792 0.92314 1.24994 0.97080 0.95048 0.97124 1.69941 1.29788 1.41721 1.11830 0.86572 0.84270 0.78459 0.78244 1.20139 1.21235 1.20040 1.21578 0.98694 0.93729 0.99727 1.22266 0.77467 1.03128 0.98684 0.92108 0.89926 0.91916 0.89780 0.89310 0.76682 0.89501 0.90373 0.90275 0.89650 0.87476 0.88125 0.76895 0.92491 0.92602 0.96062 0.95898 0.92779 0.90021 0.89348 0.85078 0.90352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.55 10.03 37.16 0.37 -0.18 16 2 C 0.12 0.75 5.86 -4.04 -0.02 0.73 16 3 N -0.69 -4.65 5.47 -62.02 -0.34 -4.99 16 4 C 0.56 5.76 7.70 -86.92 -0.67 5.09 16 5 S -0.65 -9.87 26.98 -107.50 -2.90 -12.77 16 6 N -0.56 -4.75 2.91 -174.45 -0.51 -5.26 16 7 C 0.10 0.49 6.45 -3.44 -0.02 0.47 16 8 C -0.10 -0.55 5.85 -26.22 -0.15 -0.71 16 9 C -0.11 -0.95 1.94 -154.49 -0.30 -1.25 16 10 C -0.14 -1.23 9.45 -26.80 -0.25 -1.48 16 11 C -0.17 -1.88 5.91 -91.85 -0.54 -2.42 16 12 H 0.13 1.12 8.14 -51.93 -0.42 0.70 16 13 C 0.53 8.56 6.10 -10.99 -0.07 8.50 16 14 O -0.55 -10.94 16.59 5.55 0.09 -10.85 16 15 N -0.72 -12.14 5.56 -60.29 -0.33 -12.47 16 16 C 0.12 2.57 5.61 -4.04 -0.02 2.54 16 17 C 0.01 0.34 5.09 -27.88 -0.14 0.20 16 18 C -0.52 -14.60 9.11 -34.44 -0.31 -14.91 16 19 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 20 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 21 N -0.89 -26.35 13.29 55.43 0.74 -25.62 16 22 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 26 C -0.10 -1.08 5.23 -26.46 -0.14 -1.22 16 27 C 0.11 1.06 6.34 -3.68 -0.02 1.04 16 28 H 0.06 0.16 8.14 -51.93 -0.42 -0.27 16 29 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.08 0.62 8.09 -51.93 -0.42 0.20 16 32 H 0.09 0.73 7.89 -51.93 -0.41 0.32 16 33 H 0.39 1.53 5.91 -40.82 -0.24 1.29 16 34 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.08 0.21 5.55 -51.93 -0.29 -0.08 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.09 0.34 8.10 -51.93 -0.42 -0.08 16 38 H 0.11 1.15 7.91 -51.93 -0.41 0.74 16 39 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.40 5.96 8.47 -40.82 -0.35 5.62 16 41 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 42 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 46 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 47 H 0.09 1.14 7.36 -51.93 -0.38 0.76 16 48 H 0.13 1.64 5.88 -48.65 -0.29 1.35 16 49 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 404.83 15.07 6.10 6.10 Total: -1.00 -35.78 404.83 -12.81 -48.60 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -8.24 Total: 2.68 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: -2.40 Total: -2.02 kcal Atomic # 7 Polarization: -47.89 SS G_CDS: -0.45 Total: -48.33 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.09 Total: -10.85 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: -9.87 SS G_CDS: -2.90 Total: -12.77 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -35.78 -12.81 -48.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274390783.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.266 kcal (2) G-P(sol) polarization free energy of solvation -35.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds