Wall clock time and date at job start Tue Mar 31 2020 23:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46501 * 109.46948 * 2 1 4 4 C 1.34773 * 119.99569 * 179.97438 * 3 2 1 5 5 S 1.71204 * 120.00237 * 354.99757 * 4 3 2 6 6 N 1.34773 * 119.99826 * 175.27155 * 4 3 2 7 7 C 1.46841 * 120.38153 * 4.64776 * 6 4 3 8 8 C 1.53802 * 108.57519 * 123.09340 * 7 6 4 9 9 C 1.53188 * 108.70798 * 51.51780 * 8 7 6 10 10 C 1.52842 * 117.65913 * 89.90780 * 9 8 7 11 11 C 1.52819 * 117.71200 * 158.76195 * 9 8 7 12 12 H 1.09002 * 117.50281 * 359.86440 * 11 9 8 13 13 C 1.50699 * 117.50052 * 144.89942 * 11 9 8 14 14 O 1.21286 * 119.99930 * 95.03327 * 13 11 9 15 15 N 1.34778 * 120.00263 * 275.03128 * 13 11 9 16 16 C 1.46500 * 120.00051 * 180.02562 * 15 13 11 17 17 C 1.53000 * 109.46911 * 179.97438 * 16 15 13 18 18 C 1.50699 * 109.46862 * 180.02562 * 17 16 15 19 19 H 1.07997 * 120.00186 * 359.97438 * 18 17 16 20 20 C 1.37886 * 119.99939 * 180.02562 * 18 17 16 21 21 N 1.31514 * 119.99991 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00064 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47397 * 59.99718 * 22 20 18 24 24 H 1.48499 * 109.47114 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.47022 * 299.99888 * 22 20 18 26 26 C 1.53185 * 115.07815 * 304.43144 * 9 8 7 27 27 C 1.46843 * 120.38347 * 184.93097 * 6 4 3 28 28 H 1.08997 * 109.46750 * 60.00018 * 1 2 3 29 29 H 1.09000 * 109.46639 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47008 * 299.99991 * 1 2 3 31 31 H 1.09003 * 109.47008 * 240.00009 * 2 1 3 32 32 H 1.09004 * 109.46999 * 120.00327 * 2 1 3 33 33 H 0.96997 * 119.99743 * 0.02562 * 3 2 1 34 34 H 1.09000 * 109.58356 * 242.93106 * 7 6 4 35 35 H 1.09003 * 109.58056 * 3.33157 * 7 6 4 36 36 H 1.08995 * 109.71920 * 291.69480 * 8 7 6 37 37 H 1.08999 * 109.51562 * 171.22277 * 8 7 6 38 38 H 1.09004 * 117.50613 * 215.18476 * 10 9 8 39 39 H 1.09002 * 117.50319 * 0.22967 * 10 9 8 40 40 H 0.97003 * 120.00070 * 359.97438 * 15 13 11 41 41 H 1.08999 * 109.47349 * 299.99689 * 16 15 13 42 42 H 1.08996 * 109.47186 * 59.99930 * 16 15 13 43 43 H 1.09004 * 109.47117 * 299.99312 * 17 16 15 44 44 H 1.08994 * 109.47734 * 59.99919 * 17 16 15 45 45 H 0.96997 * 120.00187 * 180.02562 * 21 20 18 46 46 H 1.09006 * 109.58576 * 295.66014 * 26 9 8 47 47 H 1.09001 * 109.59091 * 175.23363 * 26 9 8 48 48 H 1.08998 * 109.57593 * 356.67520 * 27 6 4 49 49 H 1.09005 * 109.57829 * 117.06748 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3434 1.6275 0.0005 5 16 4.4549 0.3317 0.1305 6 7 3.7934 2.8942 -0.0957 7 6 2.8499 4.0193 -0.0990 8 6 3.2175 4.9704 1.0524 9 6 4.7085 5.3078 0.9540 10 6 5.1068 6.5263 0.1216 11 6 5.1969 6.5786 1.6483 12 1 4.4567 7.1801 2.1759 13 6 6.5713 6.5499 2.2656 14 8 7.5259 6.9600 1.6398 15 7 6.7398 6.0686 3.5132 16 6 8.0759 6.0412 4.1135 17 6 7.9896 5.4530 5.5233 18 6 9.3638 5.4254 6.1410 19 1 10.2138 5.7905 5.5837 20 6 9.5362 4.9331 7.4174 21 7 8.5012 4.4881 8.0959 22 14 11.2398 4.8983 8.1829 23 1 11.7781 6.2803 8.2557 24 1 11.1560 4.3275 9.5512 25 1 12.1394 4.0599 7.3505 26 6 5.6483 4.0983 0.9387 27 6 5.2326 3.1648 -0.2046 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.3880 2.1185 0.0004 34 1 2.9163 4.5490 -1.0493 35 1 1.8357 3.6459 0.0431 36 1 3.0146 4.4868 2.0079 37 1 2.6298 5.8848 0.9711 38 1 6.0416 6.4711 -0.4363 39 1 4.3072 7.0933 -0.3552 40 1 5.9763 5.7409 4.0139 41 1 8.7363 5.4259 3.5025 42 1 8.4710 7.0556 4.1671 43 1 7.3294 6.0688 6.1341 44 1 7.5943 4.4386 5.4702 45 1 8.6224 4.1421 8.9939 46 1 5.5763 3.5676 1.8882 47 1 6.6735 4.4339 0.7821 48 1 5.7867 2.2290 -0.1322 49 1 5.4430 3.6429 -1.1614 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274390783.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:26 Heat of formation + Delta-G solvation = -27.993024 kcal Electronic energy + Delta-G solvation = -27247.455286 eV Core-core repulsion = 23527.917598 eV Total energy + Delta-G solvation = -3719.537689 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.71456 -40.59285 -38.79210 -36.88405 -36.47218 -34.82139 -32.76011 -32.50681 -31.58328 -30.38243 -27.24380 -26.07455 -25.10896 -24.72862 -23.71641 -22.90969 -22.72208 -21.08144 -20.16692 -19.01544 -18.62408 -18.41019 -17.84459 -16.72579 -16.71105 -16.61637 -16.48059 -15.99915 -15.93865 -15.68239 -15.48413 -15.16489 -14.81928 -14.54581 -14.32445 -14.16222 -13.48968 -13.44399 -13.35297 -13.26619 -13.04527 -12.95001 -12.80182 -12.67593 -12.55909 -12.45243 -12.26964 -12.21318 -12.03144 -11.80106 -11.68581 -11.51530 -11.15016 -11.03976 -10.70746 -10.62885 -10.03934 -9.85125 -9.02892 -8.69984 -8.26825 -6.37662 0.33408 0.84754 1.39150 1.41850 1.48859 1.49727 1.57830 2.20690 2.25926 2.42065 2.66684 3.07774 3.44866 3.52440 3.65340 3.80538 3.89284 3.96101 4.03179 4.17243 4.19965 4.20730 4.38790 4.42196 4.45054 4.45792 4.49386 4.54591 4.74559 4.80503 4.80918 4.84828 4.91296 4.94175 5.02277 5.05108 5.12455 5.16056 5.21282 5.25030 5.27970 5.46499 5.50327 5.53909 5.70619 5.75363 6.13019 6.31859 6.62078 6.75308 7.27623 7.31731 8.84872 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011343 B = 0.002494 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2467.867587 B =11225.734439 C =12717.848394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.117 3.883 3 N -0.664 5.664 4 C 0.585 3.415 5 S -0.762 6.762 6 N -0.554 5.554 7 C 0.094 3.906 8 C -0.089 4.089 9 C -0.096 4.096 10 C -0.121 4.121 11 C -0.185 4.185 12 H 0.158 0.842 13 C 0.532 3.468 14 O -0.592 6.592 15 N -0.714 5.714 16 C 0.141 3.859 17 C 0.025 3.975 18 C -0.549 4.549 19 H 0.058 0.942 20 C 0.007 3.993 21 N -0.926 5.926 22 Si 0.965 3.035 23 H -0.266 1.266 24 H -0.279 1.279 25 H -0.270 1.270 26 C -0.095 4.095 27 C 0.114 3.886 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.415 0.585 34 H 0.115 0.885 35 H 0.110 0.890 36 H 0.072 0.928 37 H 0.124 0.876 38 H 0.084 0.916 39 H 0.143 0.857 40 H 0.408 0.592 41 H 0.041 0.959 42 H 0.046 0.954 43 H 0.009 0.991 44 H 0.004 0.996 45 H 0.266 0.734 46 H 0.054 0.946 47 H 0.059 0.941 48 H 0.100 0.900 49 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.640 0.609 -20.729 32.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.006 4.006 3 N -0.298 5.298 4 C 0.221 3.779 5 S -0.635 6.635 6 N -0.262 5.262 7 C -0.029 4.029 8 C -0.127 4.127 9 C -0.097 4.097 10 C -0.158 4.158 11 C -0.206 4.206 12 H 0.175 0.825 13 C 0.320 3.680 14 O -0.474 6.474 15 N -0.363 5.363 16 C 0.017 3.983 17 C -0.012 4.012 18 C -0.588 4.588 19 H 0.076 0.924 20 C -0.192 4.192 21 N -0.566 5.566 22 Si 0.789 3.211 23 H -0.191 1.191 24 H -0.204 1.204 25 H -0.195 1.195 26 C -0.134 4.134 27 C -0.009 4.009 28 H 0.095 0.905 29 H 0.107 0.893 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.258 0.742 34 H 0.133 0.867 35 H 0.128 0.872 36 H 0.090 0.910 37 H 0.142 0.858 38 H 0.102 0.898 39 H 0.161 0.839 40 H 0.244 0.756 41 H 0.060 0.940 42 H 0.064 0.936 43 H 0.027 0.973 44 H 0.022 0.978 45 H 0.075 0.925 46 H 0.073 0.927 47 H 0.078 0.922 48 H 0.118 0.882 49 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -24.383 -0.002 -20.927 32.132 hybrid contribution 0.504 0.457 1.258 1.430 sum -23.879 0.455 -19.669 30.940 Atomic orbital electron populations 1.22016 0.90989 1.04820 1.03589 1.21730 0.96068 0.79540 1.03249 1.45176 1.02407 1.11817 1.70352 1.21615 0.87846 0.88372 0.80068 1.93809 1.53768 1.37221 1.78731 1.47316 1.09437 1.02735 1.66686 1.22474 0.92422 0.86232 1.01805 1.21694 0.91187 1.01287 0.98523 1.21514 0.96592 0.88059 1.03516 1.23218 1.03929 0.98607 0.90094 1.22407 0.94513 1.05105 0.98556 0.82460 1.20455 0.90907 0.75828 0.80791 1.90657 1.44115 1.49601 1.62979 1.46143 1.10944 1.63063 1.16174 1.21185 0.83226 0.99424 0.94438 1.19096 0.96712 0.95126 0.90275 1.21441 0.94549 1.42292 1.00481 0.92369 1.25885 1.01226 0.94457 0.97609 1.70048 1.31943 1.42312 1.12258 0.85506 0.79277 0.78909 0.77436 1.19110 1.20449 1.19489 1.21422 0.98152 0.95029 0.98774 1.22036 0.78356 1.01458 0.99056 0.90479 0.89276 0.90995 0.91008 0.91581 0.74175 0.86718 0.87159 0.90981 0.85769 0.89751 0.83880 0.75629 0.94036 0.93551 0.97267 0.97769 0.92495 0.92676 0.92216 0.88238 0.88329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.57 10.03 71.98 0.72 0.15 16 2 C 0.12 1.38 5.86 86.38 0.51 1.88 16 3 N -0.66 -7.36 5.47 -350.15 -1.91 -9.28 16 4 C 0.59 11.47 7.70 179.06 1.38 12.85 16 5 S -0.76 -25.10 26.98 -56.49 -1.52 -26.62 16 6 N -0.55 -8.18 2.91 -705.84 -2.06 -10.24 16 7 C 0.09 0.43 6.45 86.58 0.56 0.99 16 8 C -0.09 -0.58 5.85 30.93 0.18 -0.40 16 9 C -0.10 -1.42 1.94 -52.17 -0.10 -1.52 16 10 C -0.12 -1.74 9.45 30.55 0.29 -1.45 16 11 C -0.19 -3.55 5.91 -11.59 -0.07 -3.62 16 12 H 0.16 2.10 8.14 -2.39 -0.02 2.08 16 13 C 0.53 17.12 6.10 87.66 0.53 17.65 16 14 O -0.59 -24.21 16.59 -3.05 -0.05 -24.26 16 15 N -0.71 -24.90 5.56 -463.06 -2.57 -27.47 16 16 C 0.14 6.25 5.61 86.38 0.48 6.74 16 17 C 0.03 1.31 5.09 29.85 0.15 1.47 16 18 C -0.55 -31.51 9.11 25.60 0.23 -31.28 16 19 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 20 C 0.01 0.41 5.46 84.66 0.46 0.87 16 21 N -0.93 -55.49 13.29 21.45 0.28 -55.20 16 22 Si 0.96 44.67 29.54 68.60 2.03 46.70 16 23 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 24 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 25 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 26 C -0.10 -2.13 5.23 30.77 0.16 -1.97 16 27 C 0.11 2.27 6.34 86.43 0.55 2.82 16 28 H 0.08 0.08 8.14 -2.39 -0.02 0.06 16 29 H 0.09 0.27 8.14 -2.39 -0.02 0.26 16 30 H 0.07 0.18 8.14 -2.39 -0.02 0.16 16 31 H 0.07 1.06 8.09 -2.39 -0.02 1.04 16 32 H 0.07 1.12 7.89 -2.39 -0.02 1.10 16 33 H 0.42 1.30 5.91 -92.71 -0.55 0.75 16 34 H 0.11 0.09 8.14 -2.39 -0.02 0.07 16 35 H 0.11 -0.14 5.55 -2.39 -0.01 -0.16 16 36 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.12 0.03 8.10 -2.39 -0.02 0.02 16 38 H 0.08 1.67 7.91 -2.39 -0.02 1.66 16 39 H 0.14 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.41 12.45 8.47 -92.71 -0.79 11.66 16 41 H 0.04 1.94 8.14 -2.39 -0.02 1.93 16 42 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 43 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 44 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 45 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 46 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 47 H 0.06 1.67 7.36 -2.39 -0.02 1.65 16 48 H 0.10 2.73 5.88 -4.48 -0.03 2.70 16 49 H 0.10 1.58 8.14 -2.38 -0.02 1.56 16 Total: -1.00 -85.68 404.83 -0.16 -85.84 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -0.39 Total: 15.36 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: 6.04 Total: 5.17 kcal Atomic # 7 Polarization: -95.93 SS G_CDS: -6.26 Total: -102.19 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: -0.05 Total: -24.26 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Atomic # 16 Polarization: -25.10 SS G_CDS: -1.52 Total: -26.62 kcal Total: -85.68 -0.16 -85.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274390783.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.843 kcal (2) G-P(sol) polarization free energy of solvation -85.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds