Wall clock time and date at job start Tue Mar 31 2020 23:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46499 * 109.46920 * 2 1 4 4 C 1.34783 * 120.00144 * 179.97438 * 3 2 1 5 5 S 1.71199 * 119.99565 * 354.99397 * 4 3 2 6 6 N 1.34775 * 120.00283 * 174.99630 * 4 3 2 7 7 C 1.46839 * 120.37664 * 4.99169 * 6 4 3 8 8 C 1.53800 * 108.57724 * 123.09666 * 7 6 4 9 9 C 1.53189 * 108.71227 * 51.50529 * 8 7 6 10 10 C 1.52852 * 117.65385 * 89.90687 * 9 8 7 11 11 C 1.52814 * 117.71210 * 158.76482 * 9 8 7 12 12 H 1.09003 * 117.50227 * 144.91028 * 11 9 8 13 13 C 1.50694 * 117.50569 * 359.89354 * 11 9 8 14 14 O 1.21287 * 119.99935 * 274.83155 * 13 11 9 15 15 N 1.34770 * 120.00345 * 94.82502 * 13 11 9 16 16 C 1.46503 * 120.00334 * 180.02562 * 15 13 11 17 17 C 1.53002 * 109.46824 * 179.97438 * 16 15 13 18 18 C 1.50706 * 109.46890 * 180.02562 * 17 16 15 19 19 H 1.07995 * 119.99726 * 0.02562 * 18 17 16 20 20 C 1.37870 * 119.99949 * 180.02562 * 18 17 16 21 21 N 1.31519 * 119.99997 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 120.00274 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.47164 * 89.99919 * 22 20 18 24 24 H 1.48495 * 109.47194 * 210.00018 * 22 20 18 25 25 H 1.48502 * 109.46823 * 329.99960 * 22 20 18 26 26 C 1.53186 * 115.08003 * 304.44139 * 9 8 7 27 27 C 1.46833 * 120.38235 * 185.27146 * 6 4 3 28 28 H 1.09006 * 109.47281 * 59.99743 * 1 2 3 29 29 H 1.09002 * 109.47048 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47270 * 299.99308 * 1 2 3 31 31 H 1.08996 * 109.47282 * 120.00263 * 2 1 3 32 32 H 1.09005 * 109.47363 * 240.00529 * 2 1 3 33 33 H 0.97002 * 120.00077 * 0.02562 * 3 2 1 34 34 H 1.09004 * 109.58063 * 242.92712 * 7 6 4 35 35 H 1.08997 * 109.58582 * 3.32905 * 7 6 4 36 36 H 1.09000 * 109.71563 * 291.68674 * 8 7 6 37 37 H 1.08997 * 109.64182 * 171.28680 * 8 7 6 38 38 H 1.08995 * 117.50318 * 215.18748 * 10 9 8 39 39 H 1.09002 * 117.50286 * 0.24107 * 10 9 8 40 40 H 0.96998 * 119.99819 * 0.02562 * 15 13 11 41 41 H 1.08990 * 109.47371 * 300.00042 * 16 15 13 42 42 H 1.08999 * 109.46948 * 60.00746 * 16 15 13 43 43 H 1.09001 * 109.47580 * 300.00031 * 17 16 15 44 44 H 1.08996 * 109.47363 * 60.00282 * 17 16 15 45 45 H 0.97001 * 120.00317 * 180.02562 * 21 20 18 46 46 H 1.08999 * 109.58403 * 295.65723 * 26 9 8 47 47 H 1.08998 * 109.70956 * 175.30060 * 26 9 8 48 48 H 1.09000 * 109.57847 * 356.66803 * 27 6 4 49 49 H 1.08999 * 109.58145 * 117.07435 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6276 0.0005 5 16 4.4548 0.3319 0.1306 6 7 3.7935 2.8939 -0.1013 7 6 2.8503 4.0193 -0.1032 8 6 3.2237 4.9735 1.0438 9 6 4.7144 5.3100 0.9376 10 6 5.1092 6.5260 0.0999 11 6 5.2065 6.5824 1.6261 12 1 6.2027 6.5625 2.0680 13 6 4.1870 7.4161 2.3586 14 8 3.5301 8.2384 1.7559 15 7 4.0052 7.2480 3.6834 16 6 3.0138 8.0581 4.3954 17 6 3.0072 7.6712 5.8757 18 6 1.9869 8.5042 6.6080 19 1 1.4014 9.2359 6.0712 20 6 1.8009 8.3320 7.9632 21 7 0.9108 9.0593 8.6024 22 14 2.8140 7.0669 8.8918 23 1 4.0585 7.7019 9.3951 24 1 2.0259 6.5458 10.0375 25 1 3.1631 5.9471 7.9810 26 6 5.6536 4.0999 0.9212 27 6 5.2321 3.1636 -0.2177 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.8934 -0.5138 -0.8901 33 1 1.3879 2.1185 0.0004 34 1 2.9125 4.5464 -1.0552 35 1 1.8367 3.6468 0.0448 36 1 3.0251 4.4925 2.0016 37 1 2.6361 5.8882 0.9655 38 1 6.0413 6.4688 -0.4622 39 1 4.3076 7.0920 -0.3747 40 1 4.5308 6.5905 4.1654 41 1 3.2680 9.1133 4.2964 42 1 2.0262 7.8808 3.9696 43 1 2.7526 6.6160 5.9744 44 1 3.9947 7.8482 6.3019 45 1 0.7801 8.9385 9.5560 46 1 5.5859 3.5719 1.8724 47 1 6.6790 4.4327 0.7603 48 1 5.7862 2.2277 -0.1451 49 1 5.4382 3.6390 -1.1766 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274390784.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:30 Heat of formation + Delta-G solvation = -2.167964 kcal Electronic energy + Delta-G solvation = -27313.025368 eV Core-core repulsion = 23594.607538 eV Total energy + Delta-G solvation = -3718.417830 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.93206 -39.62705 -37.94145 -36.10923 -35.01490 -32.85140 -32.13992 -31.91693 -30.33447 -29.72921 -25.76041 -25.42271 -24.47445 -23.32111 -23.17305 -22.15502 -20.86705 -19.96116 -19.45683 -18.28941 -17.66131 -17.09142 -16.85920 -16.07933 -15.68823 -15.35407 -15.27120 -15.23481 -14.93611 -14.56112 -14.24364 -14.19465 -14.09561 -13.46214 -13.16168 -12.97996 -12.92258 -12.75501 -12.66002 -12.40840 -12.28723 -12.08653 -11.74316 -11.56417 -11.52410 -11.42984 -11.27603 -11.06236 -10.59178 -10.45497 -10.28021 -10.24168 -10.01971 -9.59734 -9.37360 -9.21204 -8.71458 -8.62218 -8.02998 -7.64069 -6.17027 -4.17699 1.12073 1.63304 2.28727 2.61303 2.80818 3.20918 3.29111 3.29641 3.32614 3.52123 4.04532 4.16631 4.32360 4.38820 4.41064 4.47999 4.56550 4.61500 4.64730 4.79693 4.84438 4.91254 5.00366 5.08357 5.15897 5.18545 5.32697 5.42762 5.42975 5.45415 5.46831 5.50152 5.58287 5.67045 5.76180 5.79565 5.88530 6.02982 6.07258 6.10534 6.42874 6.46674 6.65137 6.85115 7.05191 7.14972 7.59898 7.80591 8.36395 8.46353 8.86714 9.43013 10.95932 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010287 B = 0.002651 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2721.358973 B =10557.666350 C =11944.546317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.119 3.881 3 N -0.688 5.688 4 C 0.567 3.433 5 S -0.657 6.657 6 N -0.565 5.565 7 C 0.102 3.898 8 C -0.102 4.102 9 C -0.106 4.106 10 C -0.136 4.136 11 C -0.176 4.176 12 H 0.127 0.873 13 C 0.536 3.464 14 O -0.547 6.547 15 N -0.721 5.721 16 C 0.130 3.870 17 C -0.021 4.021 18 C -0.524 4.524 19 H 0.075 0.925 20 C 0.070 3.930 21 N -0.898 5.898 22 Si 0.881 3.119 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.266 1.266 26 C -0.095 4.095 27 C 0.106 3.894 28 H 0.061 0.939 29 H 0.082 0.918 30 H 0.063 0.937 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.397 0.603 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.091 0.909 38 H 0.103 0.897 39 H 0.107 0.893 40 H 0.397 0.603 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.021 0.979 44 H 0.018 0.982 45 H 0.265 0.735 46 H 0.079 0.921 47 H 0.086 0.914 48 H 0.131 0.869 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.136 -14.996 -21.377 26.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.004 4.004 3 N -0.321 5.321 4 C 0.208 3.792 5 S -0.529 6.529 6 N -0.274 5.274 7 C -0.023 4.023 8 C -0.140 4.140 9 C -0.107 4.107 10 C -0.174 4.174 11 C -0.198 4.198 12 H 0.145 0.855 13 C 0.321 3.679 14 O -0.425 6.425 15 N -0.370 5.370 16 C 0.008 3.992 17 C -0.059 4.059 18 C -0.563 4.563 19 H 0.093 0.907 20 C -0.132 4.132 21 N -0.536 5.536 22 Si 0.709 3.291 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.191 1.191 26 C -0.133 4.133 27 C -0.017 4.017 28 H 0.080 0.920 29 H 0.101 0.899 30 H 0.082 0.918 31 H 0.107 0.893 32 H 0.102 0.898 33 H 0.236 0.764 34 H 0.107 0.893 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.109 0.891 38 H 0.122 0.878 39 H 0.125 0.875 40 H 0.230 0.770 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.039 0.961 44 H 0.036 0.964 45 H 0.075 0.925 46 H 0.098 0.902 47 H 0.105 0.895 48 H 0.148 0.852 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.209 -15.204 -21.541 26.876 hybrid contribution -0.212 0.336 1.043 1.116 sum 4.996 -14.869 -20.498 25.811 Atomic orbital electron populations 1.22079 0.94028 1.03956 1.02646 1.21700 0.93913 0.80054 1.04770 1.45307 1.03762 1.10923 1.72122 1.22264 0.87639 0.89165 0.80181 1.93432 1.50727 1.33897 1.74801 1.47226 1.09330 1.02575 1.68288 1.22040 0.92128 0.87366 1.00815 1.21655 0.93925 1.00023 0.98400 1.21464 0.95447 0.89350 1.04443 1.23104 1.03854 0.98961 0.91441 1.22422 1.00502 1.00208 0.96623 0.85550 1.19538 0.82973 0.82993 0.82396 1.90689 1.48323 1.36062 1.67442 1.46298 1.41372 1.41065 1.08239 1.21519 0.90161 0.94293 0.93221 1.19789 0.97832 0.97600 0.90699 1.20901 1.20459 1.21399 0.93518 0.90652 1.24997 0.94969 0.95723 0.97529 1.69901 1.34039 1.40104 1.09542 0.86762 0.80453 0.82251 0.79678 1.20154 1.21195 1.19110 1.21563 0.98219 0.93776 0.99735 1.22246 0.77884 1.02897 0.98684 0.92004 0.89889 0.91756 0.89343 0.89760 0.76399 0.89341 0.90248 0.90378 0.89090 0.87844 0.87462 0.76963 0.91925 0.92049 0.96067 0.96420 0.92486 0.90244 0.89504 0.85150 0.90332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.68 10.03 37.16 0.37 -0.31 16 2 C 0.12 0.78 5.86 -4.04 -0.02 0.75 16 3 N -0.69 -4.91 5.47 -62.03 -0.34 -5.25 16 4 C 0.57 5.52 7.70 -86.91 -0.67 4.85 16 5 S -0.66 -9.04 26.98 -107.50 -2.90 -11.94 16 6 N -0.56 -4.48 2.91 -174.46 -0.51 -4.99 16 7 C 0.10 0.65 6.45 -3.44 -0.02 0.63 16 8 C -0.10 -0.87 5.25 -26.22 -0.14 -1.01 16 9 C -0.11 -0.87 1.94 -154.49 -0.30 -1.17 16 10 C -0.14 -1.15 9.45 -26.79 -0.25 -1.40 16 11 C -0.18 -1.78 5.92 -91.85 -0.54 -2.33 16 12 H 0.13 1.07 8.14 -51.93 -0.42 0.65 16 13 C 0.54 7.86 6.20 -10.99 -0.07 7.79 16 14 O -0.55 -10.07 16.25 5.55 0.09 -9.98 16 15 N -0.72 -11.06 5.56 -60.30 -0.33 -11.39 16 16 C 0.13 2.54 5.61 -4.04 -0.02 2.51 16 17 C -0.02 -0.48 4.16 -27.88 -0.12 -0.59 16 18 C -0.52 -14.40 9.66 -34.44 -0.33 -14.74 16 19 H 0.08 2.25 7.99 -52.49 -0.42 1.83 16 20 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 21 N -0.90 -26.98 13.96 55.43 0.77 -26.21 16 22 Si 0.88 20.79 27.47 -169.99 -4.67 16.13 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.27 -5.94 6.54 56.52 0.37 -5.57 16 26 C -0.09 -0.67 5.83 -26.45 -0.15 -0.83 16 27 C 0.11 0.79 6.34 -3.68 -0.02 0.77 16 28 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.09 0.72 7.89 -51.93 -0.41 0.31 16 32 H 0.08 0.61 8.09 -51.93 -0.42 0.19 16 33 H 0.40 1.99 5.91 -40.82 -0.24 1.75 16 34 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.38 5.55 -51.93 -0.29 0.09 16 36 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.09 0.94 7.24 -51.93 -0.38 0.57 16 38 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.11 1.06 7.77 -51.93 -0.40 0.65 16 40 H 0.40 5.19 8.47 -40.82 -0.35 4.85 16 41 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 42 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 43 H 0.02 0.46 7.20 -51.93 -0.37 0.09 16 44 H 0.02 0.38 7.57 -51.93 -0.39 -0.01 16 45 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 46 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.09 0.49 8.11 -51.93 -0.42 0.07 16 48 H 0.13 1.23 5.88 -48.66 -0.29 0.94 16 49 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 400.74 15.07 6.04 6.04 Total: -1.00 -35.05 400.74 -12.43 -47.48 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -8.19 Total: 3.29 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: -2.39 Total: -3.18 kcal Atomic # 7 Polarization: -47.43 SS G_CDS: -0.41 Total: -47.83 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.09 Total: -9.98 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -4.67 Total: 16.13 kcal Atomic # 16 Polarization: -9.04 SS G_CDS: -2.90 Total: -11.94 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.05 -12.43 -47.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274390784.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.312 kcal (2) G-P(sol) polarization free energy of solvation -35.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds