Wall clock time and date at job start Tue Mar 31 2020 23:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46499 * 109.46920 * 2 1 4 4 C 1.34783 * 120.00144 * 179.97438 * 3 2 1 5 5 S 1.71199 * 119.99565 * 354.99397 * 4 3 2 6 6 N 1.34775 * 120.00283 * 174.99630 * 4 3 2 7 7 C 1.46839 * 120.37664 * 4.99169 * 6 4 3 8 8 C 1.53800 * 108.57724 * 123.09666 * 7 6 4 9 9 C 1.53189 * 108.71227 * 51.50529 * 8 7 6 10 10 C 1.52852 * 117.65385 * 89.90687 * 9 8 7 11 11 C 1.52814 * 117.71210 * 158.76482 * 9 8 7 12 12 H 1.09003 * 117.50227 * 144.91028 * 11 9 8 13 13 C 1.50694 * 117.50569 * 359.89354 * 11 9 8 14 14 O 1.21287 * 119.99935 * 274.83155 * 13 11 9 15 15 N 1.34770 * 120.00345 * 94.82502 * 13 11 9 16 16 C 1.46503 * 120.00334 * 180.02562 * 15 13 11 17 17 C 1.53002 * 109.46824 * 179.97438 * 16 15 13 18 18 C 1.50706 * 109.46890 * 180.02562 * 17 16 15 19 19 H 1.07995 * 119.99726 * 0.02562 * 18 17 16 20 20 C 1.37870 * 119.99949 * 180.02562 * 18 17 16 21 21 N 1.31519 * 119.99997 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 120.00274 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.47164 * 89.99919 * 22 20 18 24 24 H 1.48495 * 109.47194 * 210.00018 * 22 20 18 25 25 H 1.48502 * 109.46823 * 329.99960 * 22 20 18 26 26 C 1.53186 * 115.08003 * 304.44139 * 9 8 7 27 27 C 1.46833 * 120.38235 * 185.27146 * 6 4 3 28 28 H 1.09006 * 109.47281 * 59.99743 * 1 2 3 29 29 H 1.09002 * 109.47048 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47270 * 299.99308 * 1 2 3 31 31 H 1.08996 * 109.47282 * 120.00263 * 2 1 3 32 32 H 1.09005 * 109.47363 * 240.00529 * 2 1 3 33 33 H 0.97002 * 120.00077 * 0.02562 * 3 2 1 34 34 H 1.09004 * 109.58063 * 242.92712 * 7 6 4 35 35 H 1.08997 * 109.58582 * 3.32905 * 7 6 4 36 36 H 1.09000 * 109.71563 * 291.68674 * 8 7 6 37 37 H 1.08997 * 109.64182 * 171.28680 * 8 7 6 38 38 H 1.08995 * 117.50318 * 215.18748 * 10 9 8 39 39 H 1.09002 * 117.50286 * 0.24107 * 10 9 8 40 40 H 0.96998 * 119.99819 * 0.02562 * 15 13 11 41 41 H 1.08990 * 109.47371 * 300.00042 * 16 15 13 42 42 H 1.08999 * 109.46948 * 60.00746 * 16 15 13 43 43 H 1.09001 * 109.47580 * 300.00031 * 17 16 15 44 44 H 1.08996 * 109.47363 * 60.00282 * 17 16 15 45 45 H 0.97001 * 120.00317 * 180.02562 * 21 20 18 46 46 H 1.08999 * 109.58403 * 295.65723 * 26 9 8 47 47 H 1.08998 * 109.70956 * 175.30060 * 26 9 8 48 48 H 1.09000 * 109.57847 * 356.66803 * 27 6 4 49 49 H 1.08999 * 109.58145 * 117.07435 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6276 0.0005 5 16 4.4548 0.3319 0.1306 6 7 3.7935 2.8939 -0.1013 7 6 2.8503 4.0193 -0.1032 8 6 3.2237 4.9735 1.0438 9 6 4.7144 5.3100 0.9376 10 6 5.1092 6.5260 0.0999 11 6 5.2065 6.5824 1.6261 12 1 6.2027 6.5625 2.0680 13 6 4.1870 7.4161 2.3586 14 8 3.5301 8.2384 1.7559 15 7 4.0052 7.2480 3.6834 16 6 3.0138 8.0581 4.3954 17 6 3.0072 7.6712 5.8757 18 6 1.9869 8.5042 6.6080 19 1 1.4014 9.2359 6.0712 20 6 1.8009 8.3320 7.9632 21 7 0.9108 9.0593 8.6024 22 14 2.8140 7.0669 8.8918 23 1 4.0585 7.7019 9.3951 24 1 2.0259 6.5458 10.0375 25 1 3.1631 5.9471 7.9810 26 6 5.6536 4.0999 0.9212 27 6 5.2321 3.1636 -0.2177 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.8934 -0.5138 -0.8901 33 1 1.3879 2.1185 0.0004 34 1 2.9125 4.5464 -1.0552 35 1 1.8367 3.6468 0.0448 36 1 3.0251 4.4925 2.0016 37 1 2.6361 5.8882 0.9655 38 1 6.0413 6.4688 -0.4622 39 1 4.3076 7.0920 -0.3747 40 1 4.5308 6.5905 4.1654 41 1 3.2680 9.1133 4.2964 42 1 2.0262 7.8808 3.9696 43 1 2.7526 6.6160 5.9744 44 1 3.9947 7.8482 6.3019 45 1 0.7801 8.9385 9.5560 46 1 5.5859 3.5719 1.8724 47 1 6.6790 4.4327 0.7603 48 1 5.7862 2.2277 -0.1451 49 1 5.4382 3.6390 -1.1766 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274390784.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:30 Heat of formation + Delta-G solvation = -25.085284 kcal Electronic energy + Delta-G solvation = -27314.019138 eV Core-core repulsion = 23594.607538 eV Total energy + Delta-G solvation = -3719.411600 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.72985 -40.59680 -38.80160 -36.91929 -36.46514 -34.80359 -32.73536 -32.56802 -32.03218 -30.39268 -27.37319 -26.11760 -25.09316 -24.57090 -23.72496 -22.84977 -22.58031 -21.07387 -20.16698 -19.09072 -18.97306 -18.36520 -17.97847 -16.73567 -16.69793 -16.62826 -16.25583 -16.04164 -15.90410 -15.74499 -15.46169 -15.25585 -14.82292 -14.73252 -14.50742 -14.22587 -13.51782 -13.46443 -13.38899 -13.30651 -13.08168 -13.03506 -12.88153 -12.71174 -12.40243 -12.24996 -12.20841 -12.19905 -12.04352 -11.80474 -11.78083 -11.55097 -11.18392 -11.03428 -10.81992 -10.73416 -10.07301 -9.85373 -8.99156 -8.66539 -8.33295 -6.40522 0.34599 0.83077 1.36619 1.38436 1.49415 1.51053 1.56672 2.20131 2.20760 2.33339 2.68326 3.01931 3.42464 3.49222 3.65192 3.78972 3.87778 3.95429 4.02386 4.10902 4.17171 4.23612 4.33055 4.36168 4.38932 4.42910 4.46866 4.55235 4.71105 4.73821 4.79127 4.83908 4.91420 4.93669 4.98572 5.01983 5.12101 5.12949 5.17660 5.21067 5.26118 5.36376 5.40396 5.47776 5.61951 5.74917 6.18813 6.25032 6.59233 6.68585 7.24080 7.27411 8.83435 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010287 B = 0.002651 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2721.358973 B =10557.666350 C =11944.546317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.120 3.880 3 N -0.673 5.673 4 C 0.581 3.419 5 S -0.741 6.741 6 N -0.555 5.555 7 C 0.105 3.895 8 C -0.102 4.102 9 C -0.092 4.092 10 C -0.124 4.124 11 C -0.187 4.187 12 H 0.152 0.848 13 C 0.536 3.464 14 O -0.589 6.589 15 N -0.714 5.714 16 C 0.146 3.854 17 C -0.012 4.012 18 C -0.539 4.539 19 H 0.030 0.970 20 C 0.006 3.994 21 N -0.950 5.950 22 Si 0.956 3.044 23 H -0.265 1.265 24 H -0.286 1.286 25 H -0.239 1.239 26 C -0.085 4.085 27 C 0.104 3.896 28 H 0.072 0.928 29 H 0.092 0.908 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.410 0.590 34 H 0.108 0.892 35 H 0.097 0.903 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.134 0.866 39 H 0.092 0.908 40 H 0.412 0.588 41 H 0.042 0.958 42 H 0.044 0.956 43 H 0.034 0.966 44 H 0.033 0.967 45 H 0.268 0.732 46 H 0.066 0.934 47 H 0.111 0.889 48 H 0.112 0.888 49 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.675 -16.413 -22.483 28.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.003 4.003 3 N -0.306 5.306 4 C 0.217 3.783 5 S -0.614 6.614 6 N -0.263 5.263 7 C -0.020 4.020 8 C -0.141 4.141 9 C -0.093 4.093 10 C -0.161 4.161 11 C -0.207 4.207 12 H 0.169 0.831 13 C 0.324 3.676 14 O -0.469 6.469 15 N -0.365 5.365 16 C 0.022 3.978 17 C -0.050 4.050 18 C -0.577 4.577 19 H 0.048 0.952 20 C -0.191 4.191 21 N -0.590 5.590 22 Si 0.778 3.222 23 H -0.190 1.190 24 H -0.212 1.212 25 H -0.162 1.162 26 C -0.123 4.123 27 C -0.018 4.018 28 H 0.091 0.909 29 H 0.110 0.890 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.252 0.748 34 H 0.127 0.873 35 H 0.115 0.885 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.152 0.848 39 H 0.110 0.890 40 H 0.248 0.752 41 H 0.061 0.939 42 H 0.063 0.937 43 H 0.053 0.947 44 H 0.051 0.949 45 H 0.077 0.923 46 H 0.085 0.915 47 H 0.129 0.871 48 H 0.130 0.870 49 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 6.753 -16.619 -22.672 28.910 hybrid contribution -0.826 0.936 1.326 1.821 sum 5.927 -15.683 -21.346 27.143 Atomic orbital electron populations 1.22033 0.91680 1.04826 1.03243 1.21718 0.95650 0.79438 1.03543 1.45321 1.03037 1.11805 1.70449 1.21806 0.87745 0.88656 0.80118 1.93595 1.52803 1.36582 1.78410 1.47360 1.10053 1.02155 1.66768 1.22163 0.92516 0.86430 1.00844 1.21601 0.94231 0.99545 0.98684 1.21473 0.95255 0.89287 1.03275 1.23207 1.04708 0.97988 0.90222 1.22412 1.00003 1.00817 0.97495 0.83054 1.20310 0.82969 0.82583 0.81782 1.90673 1.50138 1.38007 1.68127 1.46080 1.40726 1.40910 1.08739 1.20996 0.90623 0.93862 0.92287 1.19638 0.96720 0.97085 0.91551 1.21248 1.21185 1.21206 0.94079 0.95179 1.26041 0.96262 0.98183 0.98623 1.70068 1.36320 1.42465 1.10100 0.85584 0.78578 0.79775 0.78232 1.19010 1.21196 1.16217 1.21523 0.99174 0.92718 0.98872 1.22310 0.77261 1.02273 0.99974 0.90861 0.88957 0.91572 0.91112 0.90526 0.74769 0.87349 0.88510 0.91656 0.90922 0.84835 0.88970 0.75229 0.93945 0.93741 0.94730 0.94866 0.92290 0.91547 0.87080 0.86962 0.88106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.98 10.03 71.98 0.72 -0.25 16 2 C 0.12 1.46 5.86 86.38 0.51 1.96 16 3 N -0.67 -8.46 5.47 -350.17 -1.91 -10.38 16 4 C 0.58 10.54 7.70 179.05 1.38 11.92 16 5 S -0.74 -20.61 26.98 -56.49 -1.52 -22.14 16 6 N -0.56 -7.52 2.91 -705.87 -2.06 -9.57 16 7 C 0.10 1.04 6.45 86.58 0.56 1.59 16 8 C -0.10 -1.54 5.25 30.93 0.16 -1.38 16 9 C -0.09 -1.23 1.94 -52.17 -0.10 -1.33 16 10 C -0.12 -1.67 9.45 30.56 0.29 -1.38 16 11 C -0.19 -3.23 5.92 -11.59 -0.07 -3.30 16 12 H 0.15 1.92 8.14 -2.39 -0.02 1.90 16 13 C 0.54 15.06 6.20 87.66 0.54 15.60 16 14 O -0.59 -21.66 16.25 -3.05 -0.05 -21.71 16 15 N -0.71 -20.97 5.56 -463.07 -2.57 -23.55 16 16 C 0.15 5.74 5.61 86.38 0.48 6.22 16 17 C -0.01 -0.53 4.16 29.85 0.12 -0.41 16 18 C -0.54 -30.28 9.66 25.60 0.25 -30.03 16 19 H 0.03 1.89 7.99 -2.91 -0.02 1.87 16 20 C 0.01 0.35 5.47 84.65 0.46 0.82 16 21 N -0.95 -58.61 13.96 21.45 0.30 -58.31 16 22 Si 0.96 41.99 27.47 68.60 1.88 43.87 16 23 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 24 H -0.29 -12.51 7.11 99.48 0.71 -11.81 16 25 H -0.24 -9.38 6.54 99.48 0.65 -8.73 16 26 C -0.08 -0.93 5.83 30.77 0.18 -0.75 16 27 C 0.10 1.29 6.34 86.43 0.55 1.84 16 28 H 0.07 0.31 8.14 -2.38 -0.02 0.29 16 29 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.07 1.15 7.89 -2.39 -0.02 1.13 16 32 H 0.08 1.09 8.09 -2.38 -0.02 1.07 16 33 H 0.41 3.03 5.91 -92.71 -0.55 2.48 16 34 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.10 0.62 5.55 -2.39 -0.01 0.61 16 36 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.07 1.42 7.24 -2.39 -0.02 1.41 16 38 H 0.13 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.09 1.60 7.77 -2.39 -0.02 1.58 16 40 H 0.41 9.72 8.47 -92.71 -0.79 8.93 16 41 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.03 1.42 7.20 -2.39 -0.02 1.41 16 44 H 0.03 1.35 7.57 -2.39 -0.02 1.34 16 45 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 46 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 47 H 0.11 0.74 8.11 -2.39 -0.02 0.72 16 48 H 0.11 1.97 5.88 -4.47 -0.03 1.94 16 49 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -80.87 400.74 -0.34 -81.21 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: -0.44 Total: 19.44 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: 6.04 Total: 1.13 kcal Atomic # 7 Polarization: -95.56 SS G_CDS: -6.24 Total: -101.81 kcal Atomic # 8 Polarization: -21.66 SS G_CDS: -0.05 Total: -21.71 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 1.88 Total: 43.87 kcal Atomic # 16 Polarization: -20.61 SS G_CDS: -1.52 Total: -22.14 kcal Total: -80.87 -0.34 -81.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274390784.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.128 kcal (2) G-P(sol) polarization free energy of solvation -80.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds