Wall clock time and date at job start Tue Mar 31 2020 22:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.47412 * 2 1 4 4 C 1.53002 * 109.47482 * 119.99706 * 2 1 3 5 5 C 1.53001 * 109.47386 * 185.00145 * 4 2 1 6 6 N 1.46500 * 109.46673 * 179.97438 * 5 4 2 7 7 C 1.34786 * 119.99517 * 179.97438 * 6 5 4 8 8 O 1.21685 * 119.99868 * 0.02562 * 7 6 5 9 9 C 1.46680 * 119.99913 * 180.02562 * 7 6 5 10 10 C 1.35665 * 126.13044 * 0.02791 * 9 7 6 11 11 N 1.30944 * 114.19167 * 179.97438 * 10 9 7 12 12 C 1.29420 * 117.36333 * 359.97438 * 11 10 9 13 13 C 1.50703 * 124.80602 * 179.97438 * 12 11 10 14 14 C 1.53006 * 109.46750 * 90.04280 * 13 12 11 15 15 C 1.52995 * 109.47209 * 60.00533 * 14 13 12 16 16 C 1.53002 * 109.46690 * 180.02562 * 14 13 12 17 17 C 1.53002 * 109.47154 * 300.00049 * 14 13 12 18 18 S 1.70950 * 110.39381 * 0.02562 * 12 11 10 19 19 N 1.46501 * 109.47225 * 239.99702 * 2 1 3 20 20 C 1.36945 * 119.99855 * 84.99977 * 19 2 1 21 21 H 1.07996 * 119.99932 * 0.02562 * 20 19 2 22 22 C 1.38809 * 119.99494 * 180.02562 * 20 19 2 23 23 N 1.31618 * 120.00668 * 0.02562 * 22 20 19 24 24 Si 1.86812 * 119.99647 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46648 * 90.00299 * 24 22 20 26 26 H 1.48500 * 109.46990 * 210.00272 * 24 22 20 27 27 H 1.48498 * 109.46731 * 330.00470 * 24 22 20 28 28 H 1.09000 * 109.47013 * 300.00540 * 1 2 3 29 29 H 1.08997 * 109.47139 * 60.00102 * 1 2 3 30 30 H 1.08999 * 109.47142 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46908 * 64.99473 * 4 2 1 32 32 H 1.09000 * 109.46661 * 305.00175 * 4 2 1 33 33 H 1.08991 * 109.46980 * 59.99919 * 5 4 2 34 34 H 1.09000 * 109.46785 * 299.99943 * 5 4 2 35 35 H 0.96995 * 120.00708 * 0.02562 * 6 5 4 36 36 H 1.07999 * 122.90402 * 359.70401 * 10 9 7 37 37 H 1.08998 * 109.47687 * 210.04209 * 13 12 11 38 38 H 1.08994 * 109.47038 * 330.04705 * 13 12 11 39 39 H 1.08993 * 109.47431 * 59.99597 * 15 14 13 40 40 H 1.08999 * 109.47365 * 180.02562 * 15 14 13 41 41 H 1.09005 * 109.46644 * 299.99641 * 15 14 13 42 42 H 1.08999 * 109.47241 * 59.99802 * 16 14 13 43 43 H 1.09002 * 109.46958 * 180.02562 * 16 14 13 44 44 H 1.08998 * 109.47463 * 299.99754 * 16 14 13 45 45 H 1.08998 * 109.46676 * 60.00383 * 17 14 13 46 46 H 1.09002 * 109.46829 * 180.02562 * 17 14 13 47 47 H 1.08999 * 109.47099 * 300.00395 * 17 14 13 48 48 H 0.97001 * 119.99958 * 264.99904 * 19 2 1 49 49 H 0.97000 * 120.00191 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5649 -0.6132 1.3137 6 7 4.0531 -1.3032 2.5102 7 6 5.3741 -1.3393 2.7755 8 8 6.1611 -0.7983 2.0213 9 6 5.8631 -2.0307 3.9732 10 6 5.1006 -2.6724 4.8936 11 7 5.7821 -3.2113 5.8733 12 6 7.0686 -3.0729 5.8495 13 6 8.0122 -3.6223 6.8883 14 6 8.4501 -5.0318 6.4849 15 6 9.1587 -4.9775 5.1300 16 6 9.4076 -5.5898 7.5397 17 6 7.2214 -5.9376 6.3819 18 16 7.5461 -2.1775 4.4738 19 7 2.0183 -0.6907 -1.1961 20 6 2.1491 -0.0075 -2.3758 21 1 1.8926 1.0404 -2.4242 22 6 2.6113 -0.6621 -3.5092 23 7 2.9234 -1.9394 -3.4503 24 14 2.7891 0.2695 -5.1186 25 1 4.1514 0.8545 -5.2040 26 1 2.5781 -0.6620 -6.2557 27 1 1.7791 1.3567 -5.1753 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.7516 -1.7714 1.2057 32 1 1.6054 -0.2616 2.1369 33 1 3.8532 0.4370 1.3573 34 1 3.9995 -1.0727 0.4260 35 1 3.4259 -1.7348 3.1112 36 1 4.0242 -2.7300 4.8265 37 1 8.8876 -2.9770 6.9616 38 1 7.5074 -3.6609 7.8535 39 1 10.0340 -4.3322 5.2033 40 1 9.4702 -5.9817 4.8424 41 1 8.4762 -4.5801 4.3787 42 1 8.9024 -5.6284 8.5048 43 1 9.7199 -6.5937 7.2522 44 1 10.2830 -4.9446 7.6135 45 1 6.5390 -5.5402 5.6306 46 1 7.5334 -6.9418 6.0950 47 1 6.7165 -5.9762 7.3472 48 1 2.2490 -1.6318 -1.1525 49 1 3.2468 -2.3967 -4.2423 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281759376.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:56 Heat of formation + Delta-G solvation = -6.895497 kcal Electronic energy + Delta-G solvation = -26523.040088 eV Core-core repulsion = 22804.417257 eV Total energy + Delta-G solvation = -3718.622831 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.42802 -39.30498 -37.74973 -36.58907 -34.43846 -32.37864 -31.57197 -29.51522 -28.58801 -27.72719 -27.71118 -27.52505 -24.73319 -23.89795 -22.88592 -21.67714 -20.25507 -19.76097 -19.12396 -18.15516 -17.38532 -17.07985 -15.91862 -15.65052 -15.37359 -15.08231 -14.91390 -14.77211 -14.48907 -14.11136 -13.89835 -13.69096 -13.49280 -13.35709 -12.93114 -12.85144 -12.50703 -12.45594 -12.13504 -12.05242 -12.01363 -11.77651 -11.55441 -11.34669 -11.18711 -11.10722 -11.09468 -10.92576 -10.75233 -10.65970 -10.40896 -10.22542 -9.95081 -9.68211 -9.62595 -9.61430 -9.14632 -8.92601 -8.83927 -6.94337 -5.73909 -3.02735 0.04004 0.92898 1.46701 2.26584 3.17026 3.28799 3.46383 3.51362 3.52687 3.70089 4.29946 4.34109 4.43700 4.61885 4.71195 4.80073 4.98801 5.01699 5.07869 5.22219 5.26580 5.30725 5.37909 5.38817 5.41461 5.54695 5.56231 5.58753 5.65996 5.66986 5.75472 5.84615 5.86382 5.94365 6.03421 6.05209 6.16502 6.31811 6.37906 6.43145 6.61505 6.68515 6.85980 7.05954 7.35213 7.49584 7.73176 8.19961 8.44345 9.55772 10.12146 10.46650 11.48670 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017989 B = 0.002060 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.100354 B =13588.120030 C =14276.504705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.174 3.826 3 H 0.050 0.950 4 C -0.133 4.133 5 C 0.123 3.877 6 N -0.714 5.714 7 C 0.587 3.413 8 O -0.530 6.530 9 C -0.291 4.291 10 C 0.088 3.912 11 N -0.473 5.473 12 C 0.044 3.956 13 C -0.037 4.037 14 C -0.064 4.064 15 C -0.155 4.155 16 C -0.139 4.139 17 C -0.140 4.140 18 S 0.229 5.771 19 N -0.724 5.724 20 C -0.238 4.238 21 H 0.070 0.930 22 C -0.013 4.013 23 N -0.932 5.932 24 Si 0.905 3.095 25 H -0.290 1.290 26 H -0.292 1.292 27 H -0.282 1.282 28 H 0.035 0.965 29 H 0.054 0.946 30 H 0.046 0.954 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.396 0.604 36 H 0.180 0.820 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.059 0.941 40 H 0.062 0.938 41 H 0.057 0.943 42 H 0.058 0.942 43 H 0.060 0.940 44 H 0.057 0.943 45 H 0.059 0.941 46 H 0.054 0.946 47 H 0.058 0.942 48 H 0.383 0.617 49 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.624 -5.951 26.275 28.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.064 3.936 3 H 0.068 0.932 4 C -0.172 4.172 5 C 0.001 3.999 6 N -0.365 5.365 7 C 0.371 3.629 8 O -0.408 6.408 9 C -0.416 4.416 10 C -0.071 4.071 11 N -0.187 5.187 12 C -0.230 4.230 13 C -0.078 4.078 14 C -0.065 4.065 15 C -0.212 4.212 16 C -0.197 4.197 17 C -0.198 4.198 18 S 0.488 5.512 19 N -0.366 5.366 20 C -0.369 4.369 21 H 0.088 0.912 22 C -0.209 4.209 23 N -0.581 5.581 24 Si 0.736 3.264 25 H -0.217 1.217 26 H -0.219 1.219 27 H -0.208 1.208 28 H 0.054 0.946 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.106 0.894 35 H 0.230 0.770 36 H 0.197 0.803 37 H 0.106 0.894 38 H 0.116 0.884 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.076 0.924 45 H 0.078 0.922 46 H 0.073 0.927 47 H 0.077 0.923 48 H 0.217 0.783 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 10.975 -5.359 25.605 28.368 hybrid contribution -1.318 -0.133 -0.803 1.549 sum 9.657 -5.492 24.802 27.176 Atomic orbital electron populations 1.22421 0.99076 1.00850 0.99988 1.20152 0.91922 0.95587 0.85958 0.93236 1.22075 0.93639 1.01947 0.99498 1.21539 0.94576 0.97231 0.86584 1.45875 1.06230 1.56745 1.27678 1.16714 0.82989 0.79853 0.83318 1.90887 1.55176 1.45856 1.48873 1.25896 0.98002 1.13048 1.04634 1.22151 1.01417 0.94746 0.88768 1.66132 1.05382 1.21392 1.25821 1.27429 0.94376 1.00528 1.00713 1.20486 0.95828 0.95945 0.95560 1.20534 0.96284 0.93482 0.96229 1.22089 1.00471 1.02571 0.96101 1.21847 0.98629 1.01133 0.98059 1.21876 0.96699 0.98661 1.02524 1.84153 1.04801 1.45733 1.16560 1.42455 1.78096 1.10645 1.05357 1.19217 1.36540 0.93826 0.87317 0.91194 1.24731 1.02179 0.95955 0.98062 1.69652 1.50909 1.08625 1.28892 0.86220 0.77817 0.78581 0.83751 1.21708 1.21859 1.20822 0.94568 0.92691 0.93510 0.91487 0.91814 0.91475 0.89377 0.76954 0.80333 0.89397 0.88447 0.92164 0.91885 0.92415 0.92312 0.92116 0.92391 0.92219 0.92721 0.92304 0.78290 0.93558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.82 9.49 37.16 0.35 -2.46 16 2 C 0.17 3.29 2.89 -67.93 -0.20 3.10 16 3 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 4 C -0.13 -1.98 4.87 -26.73 -0.13 -2.11 16 5 C 0.12 2.02 5.56 -4.04 -0.02 2.00 16 6 N -0.71 -9.71 5.54 -61.62 -0.34 -10.05 16 7 C 0.59 9.15 7.79 -12.85 -0.10 9.05 16 8 O -0.53 -10.56 16.97 5.20 0.09 -10.47 16 9 C -0.29 -3.65 6.48 -37.10 -0.24 -3.89 16 10 C 0.09 0.92 10.93 -18.85 -0.21 0.71 16 11 N -0.47 -4.99 9.67 -11.50 -0.11 -5.11 16 12 C 0.04 0.41 4.92 -13.29 -0.07 0.34 16 13 C -0.04 -0.25 4.86 -27.88 -0.14 -0.38 16 14 C -0.06 -0.40 0.80 -154.51 -0.12 -0.53 16 15 C -0.15 -1.07 8.02 37.16 0.30 -0.78 16 16 C -0.14 -0.66 8.47 37.16 0.31 -0.35 16 17 C -0.14 -1.05 8.17 37.16 0.30 -0.74 16 18 S 0.23 2.46 21.38 -107.50 -2.30 0.16 16 19 N -0.72 -17.61 4.57 -53.42 -0.24 -17.85 16 20 C -0.24 -6.55 9.93 -15.06 -0.15 -6.70 16 21 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 22 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 23 N -0.93 -28.32 13.06 55.49 0.72 -27.60 16 24 Si 0.91 22.69 29.55 -169.99 -5.02 17.67 16 25 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 26 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 27 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 28 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 34 H 0.09 1.81 7.75 -51.93 -0.40 1.41 16 35 H 0.40 3.98 7.18 -40.82 -0.29 3.68 16 36 H 0.18 1.38 7.15 -52.49 -0.38 1.01 16 37 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 0.49 6.03 -51.93 -0.31 0.18 16 42 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 43 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 45 H 0.06 0.56 6.64 -51.93 -0.34 0.22 16 46 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 47 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.38 9.97 7.80 -40.82 -0.32 9.65 16 49 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 409.64 15.07 6.17 6.17 Total: -1.00 -33.41 409.64 -9.58 -42.99 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -8.35 Total: 7.30 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: -0.20 Total: -3.21 kcal Atomic # 7 Polarization: -60.63 SS G_CDS: 0.03 Total: -60.60 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.09 Total: -10.47 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.67 kcal Atomic # 16 Polarization: 2.46 SS G_CDS: -2.30 Total: 0.16 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -33.41 -9.58 -42.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281759376.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.095 kcal (2) G-P(sol) polarization free energy of solvation -33.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds