Wall clock time and date at job start Tue Mar 31 2020 22:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.47412 * 2 1 4 4 C 1.53002 * 109.47482 * 119.99706 * 2 1 3 5 5 C 1.53001 * 109.47386 * 185.00145 * 4 2 1 6 6 N 1.46500 * 109.46673 * 179.97438 * 5 4 2 7 7 C 1.34786 * 119.99517 * 179.97438 * 6 5 4 8 8 O 1.21685 * 119.99868 * 0.02562 * 7 6 5 9 9 C 1.46680 * 119.99913 * 180.02562 * 7 6 5 10 10 C 1.35665 * 126.13044 * 0.02791 * 9 7 6 11 11 N 1.30944 * 114.19167 * 179.97438 * 10 9 7 12 12 C 1.29420 * 117.36333 * 359.97438 * 11 10 9 13 13 C 1.50703 * 124.80602 * 179.97438 * 12 11 10 14 14 C 1.53006 * 109.46750 * 90.04280 * 13 12 11 15 15 C 1.52995 * 109.47209 * 60.00533 * 14 13 12 16 16 C 1.53002 * 109.46690 * 180.02562 * 14 13 12 17 17 C 1.53002 * 109.47154 * 300.00049 * 14 13 12 18 18 S 1.70950 * 110.39381 * 0.02562 * 12 11 10 19 19 N 1.46501 * 109.47225 * 239.99702 * 2 1 3 20 20 C 1.36945 * 119.99855 * 84.99977 * 19 2 1 21 21 H 1.07996 * 119.99932 * 0.02562 * 20 19 2 22 22 C 1.38809 * 119.99494 * 180.02562 * 20 19 2 23 23 N 1.31618 * 120.00668 * 0.02562 * 22 20 19 24 24 Si 1.86812 * 119.99647 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46648 * 90.00299 * 24 22 20 26 26 H 1.48500 * 109.46990 * 210.00272 * 24 22 20 27 27 H 1.48498 * 109.46731 * 330.00470 * 24 22 20 28 28 H 1.09000 * 109.47013 * 300.00540 * 1 2 3 29 29 H 1.08997 * 109.47139 * 60.00102 * 1 2 3 30 30 H 1.08999 * 109.47142 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46908 * 64.99473 * 4 2 1 32 32 H 1.09000 * 109.46661 * 305.00175 * 4 2 1 33 33 H 1.08991 * 109.46980 * 59.99919 * 5 4 2 34 34 H 1.09000 * 109.46785 * 299.99943 * 5 4 2 35 35 H 0.96995 * 120.00708 * 0.02562 * 6 5 4 36 36 H 1.07999 * 122.90402 * 359.70401 * 10 9 7 37 37 H 1.08998 * 109.47687 * 210.04209 * 13 12 11 38 38 H 1.08994 * 109.47038 * 330.04705 * 13 12 11 39 39 H 1.08993 * 109.47431 * 59.99597 * 15 14 13 40 40 H 1.08999 * 109.47365 * 180.02562 * 15 14 13 41 41 H 1.09005 * 109.46644 * 299.99641 * 15 14 13 42 42 H 1.08999 * 109.47241 * 59.99802 * 16 14 13 43 43 H 1.09002 * 109.46958 * 180.02562 * 16 14 13 44 44 H 1.08998 * 109.47463 * 299.99754 * 16 14 13 45 45 H 1.08998 * 109.46676 * 60.00383 * 17 14 13 46 46 H 1.09002 * 109.46829 * 180.02562 * 17 14 13 47 47 H 1.08999 * 109.47099 * 300.00395 * 17 14 13 48 48 H 0.97001 * 119.99958 * 264.99904 * 19 2 1 49 49 H 0.97000 * 120.00191 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5649 -0.6132 1.3137 6 7 4.0531 -1.3032 2.5102 7 6 5.3741 -1.3393 2.7755 8 8 6.1611 -0.7983 2.0213 9 6 5.8631 -2.0307 3.9732 10 6 5.1006 -2.6724 4.8936 11 7 5.7821 -3.2113 5.8733 12 6 7.0686 -3.0729 5.8495 13 6 8.0122 -3.6223 6.8883 14 6 8.4501 -5.0318 6.4849 15 6 9.1587 -4.9775 5.1300 16 6 9.4076 -5.5898 7.5397 17 6 7.2214 -5.9376 6.3819 18 16 7.5461 -2.1775 4.4738 19 7 2.0183 -0.6907 -1.1961 20 6 2.1491 -0.0075 -2.3758 21 1 1.8926 1.0404 -2.4242 22 6 2.6113 -0.6621 -3.5092 23 7 2.9234 -1.9394 -3.4503 24 14 2.7891 0.2695 -5.1186 25 1 4.1514 0.8545 -5.2040 26 1 2.5781 -0.6620 -6.2557 27 1 1.7791 1.3567 -5.1753 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.7516 -1.7714 1.2057 32 1 1.6054 -0.2616 2.1369 33 1 3.8532 0.4370 1.3573 34 1 3.9995 -1.0727 0.4260 35 1 3.4259 -1.7348 3.1112 36 1 4.0242 -2.7300 4.8265 37 1 8.8876 -2.9770 6.9616 38 1 7.5074 -3.6609 7.8535 39 1 10.0340 -4.3322 5.2033 40 1 9.4702 -5.9817 4.8424 41 1 8.4762 -4.5801 4.3787 42 1 8.9024 -5.6284 8.5048 43 1 9.7199 -6.5937 7.2522 44 1 10.2830 -4.9446 7.6135 45 1 6.5390 -5.5402 5.6306 46 1 7.5334 -6.9418 6.0950 47 1 6.7165 -5.9762 7.3472 48 1 2.2490 -1.6318 -1.1525 49 1 3.2468 -2.3967 -4.2423 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281759376.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:56 Heat of formation + Delta-G solvation = -29.020965 kcal Electronic energy + Delta-G solvation = -26523.999520 eV Core-core repulsion = 22804.417257 eV Total energy + Delta-G solvation = -3719.582264 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.34902 -40.40483 -38.37562 -38.12425 -35.92744 -34.20251 -32.55802 -30.99772 -29.91805 -28.78339 -28.20986 -28.08381 -25.88900 -25.46555 -24.25021 -22.79521 -21.59382 -20.75864 -20.02105 -19.24977 -18.92797 -18.23410 -17.05104 -16.82029 -16.65764 -16.23896 -15.82892 -15.66485 -15.56473 -15.34997 -15.19439 -14.92277 -14.76288 -14.30123 -14.12752 -13.98429 -13.57317 -13.41095 -13.25294 -12.90893 -12.84247 -12.66950 -12.64231 -12.60385 -12.52524 -12.31042 -12.24427 -12.11245 -11.91800 -11.76899 -11.69123 -11.60736 -11.59226 -11.36818 -10.94598 -10.63260 -10.54363 -10.21225 -9.88230 -8.97721 -7.92756 -5.19381 -0.83090 0.08321 0.64244 1.35451 1.45241 1.47420 1.54787 2.06714 2.13600 2.56810 2.99315 3.41466 3.67358 3.75131 3.81351 3.90083 3.91340 3.98316 4.10050 4.20544 4.23170 4.35881 4.50552 4.58401 4.66557 4.72006 4.75796 4.82938 4.87285 4.89034 4.92893 4.96677 5.01704 5.07154 5.09433 5.09739 5.19173 5.21717 5.34564 5.35813 5.40105 5.43464 5.50254 5.54390 5.62249 6.30335 6.37195 6.53265 7.06045 7.36279 8.14508 8.35400 9.30759 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017989 B = 0.002060 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.100354 B =13588.120030 C =14276.504705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.163 3.837 3 H 0.044 0.956 4 C -0.116 4.116 5 C 0.134 3.866 6 N -0.698 5.698 7 C 0.586 3.414 8 O -0.586 6.586 9 C -0.327 4.327 10 C 0.110 3.890 11 N -0.488 5.488 12 C 0.068 3.932 13 C -0.041 4.041 14 C -0.059 4.059 15 C -0.157 4.157 16 C -0.135 4.135 17 C -0.139 4.139 18 S 0.215 5.785 19 N -0.735 5.735 20 C -0.231 4.231 21 H 0.075 0.925 22 C -0.080 4.080 23 N -0.970 5.970 24 Si 0.966 3.034 25 H -0.293 1.293 26 H -0.297 1.297 27 H -0.268 1.268 28 H 0.076 0.924 29 H 0.032 0.968 30 H 0.045 0.955 31 H 0.073 0.927 32 H 0.108 0.892 33 H 0.056 0.944 34 H 0.039 0.961 35 H 0.417 0.583 36 H 0.207 0.793 37 H 0.109 0.891 38 H 0.110 0.890 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.037 0.963 42 H 0.066 0.934 43 H 0.061 0.939 44 H 0.068 0.932 45 H 0.036 0.964 46 H 0.057 0.943 47 H 0.063 0.937 48 H 0.372 0.628 49 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.051 -5.911 29.293 31.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.055 3.945 3 H 0.062 0.938 4 C -0.154 4.154 5 C 0.010 3.990 6 N -0.350 5.350 7 C 0.373 3.627 8 O -0.468 6.468 9 C -0.451 4.451 10 C -0.050 4.050 11 N -0.202 5.202 12 C -0.206 4.206 13 C -0.082 4.082 14 C -0.061 4.061 15 C -0.215 4.215 16 C -0.193 4.193 17 C -0.197 4.197 18 S 0.474 5.526 19 N -0.376 5.376 20 C -0.363 4.363 21 H 0.092 0.908 22 C -0.272 4.272 23 N -0.621 5.621 24 Si 0.796 3.204 25 H -0.220 1.220 26 H -0.224 1.224 27 H -0.193 1.193 28 H 0.095 0.905 29 H 0.051 0.949 30 H 0.064 0.936 31 H 0.092 0.908 32 H 0.126 0.874 33 H 0.074 0.926 34 H 0.057 0.943 35 H 0.255 0.745 36 H 0.224 0.776 37 H 0.127 0.873 38 H 0.128 0.872 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.056 0.944 42 H 0.085 0.915 43 H 0.080 0.920 44 H 0.087 0.913 45 H 0.056 0.944 46 H 0.076 0.924 47 H 0.082 0.918 48 H 0.203 0.797 49 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 10.349 -5.294 28.685 30.951 hybrid contribution -1.125 -0.173 -1.573 1.941 sum 9.223 -5.467 27.112 29.155 Atomic orbital electron populations 1.22255 0.97034 1.01075 1.00895 1.20468 0.93217 0.95246 0.85584 0.93825 1.21932 0.92067 1.02301 0.99131 1.21192 0.95606 0.96246 0.85906 1.45618 1.06243 1.56171 1.26953 1.17114 0.82949 0.79065 0.83576 1.90851 1.56535 1.48430 1.50959 1.25570 0.99140 1.15656 1.04739 1.22586 1.02578 0.92382 0.87417 1.66265 1.05829 1.22115 1.26010 1.28006 0.94499 0.98177 0.99880 1.20743 0.96121 0.96315 0.95010 1.20520 0.96109 0.93035 0.96434 1.22120 1.00517 1.02849 0.96007 1.21818 0.98543 1.01293 0.97625 1.21867 0.96816 0.98997 1.01975 1.84196 1.04497 1.46364 1.17532 1.42659 1.78367 1.10232 1.06317 1.19603 1.34245 0.94070 0.88423 0.90750 1.25499 1.03444 0.96880 1.01377 1.69806 1.53005 1.10125 1.29211 0.85237 0.77692 0.77565 0.79908 1.22020 1.22353 1.19269 0.90531 0.94886 0.93607 0.90798 0.87392 0.92578 0.94251 0.74536 0.77642 0.87294 0.87152 0.91093 0.91653 0.94400 0.91511 0.92000 0.91333 0.94443 0.92442 0.91832 0.79658 0.94321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.93 9.49 71.98 0.68 -4.25 16 2 C 0.16 6.01 2.89 44.99 0.13 6.14 16 3 H 0.04 1.66 8.08 -2.38 -0.02 1.64 16 4 C -0.12 -3.23 4.87 30.60 0.15 -3.09 16 5 C 0.13 4.46 5.56 86.38 0.48 4.94 16 6 N -0.70 -18.66 5.54 -467.08 -2.59 -21.24 16 7 C 0.59 18.70 7.79 86.45 0.67 19.38 16 8 O -0.59 -24.64 16.97 -4.30 -0.07 -24.71 16 9 C -0.33 -8.14 6.48 23.88 0.15 -7.98 16 10 C 0.11 2.13 10.93 84.23 0.92 3.05 16 11 N -0.49 -9.41 9.67 -190.30 -1.84 -11.25 16 12 C 0.07 1.17 4.92 88.46 0.44 1.61 16 13 C -0.04 -0.44 4.86 29.85 0.15 -0.29 16 14 C -0.06 -0.63 0.80 -52.18 -0.04 -0.67 16 15 C -0.16 -2.00 8.02 71.98 0.58 -1.42 16 16 C -0.14 -0.91 8.47 71.98 0.61 -0.30 16 17 C -0.14 -1.87 8.17 71.98 0.59 -1.28 16 18 S 0.21 4.59 21.38 -56.49 -1.21 3.39 16 19 N -0.73 -36.32 4.57 -322.93 -1.48 -37.79 16 20 C -0.23 -12.91 9.93 84.03 0.83 -12.08 16 21 H 0.07 4.00 7.83 -2.91 -0.02 3.98 16 22 C -0.08 -4.70 5.50 84.86 0.47 -4.24 16 23 N -0.97 -60.81 13.06 21.65 0.28 -60.53 16 24 Si 0.97 47.59 29.55 68.60 2.03 49.61 16 25 H -0.29 -14.41 7.11 99.48 0.71 -13.70 16 26 H -0.30 -14.71 7.11 99.48 0.71 -14.00 16 27 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 28 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.04 1.70 7.75 -2.39 -0.02 1.69 16 35 H 0.42 7.49 7.18 -92.71 -0.67 6.82 16 36 H 0.21 2.59 7.15 -2.91 -0.02 2.57 16 37 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.04 0.63 6.03 -2.38 -0.01 0.62 16 42 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 43 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 44 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16 45 H 0.04 0.67 6.64 -2.39 -0.02 0.65 16 46 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 47 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 48 H 0.37 19.90 7.80 -92.71 -0.72 19.18 16 49 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -76.06 409.64 1.49 -74.57 By element: Atomic # 1 Polarization: 28.90 SS G_CDS: -0.44 Total: 28.46 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: 6.81 Total: -0.49 kcal Atomic # 7 Polarization: -125.20 SS G_CDS: -5.62 Total: -130.82 kcal Atomic # 8 Polarization: -24.64 SS G_CDS: -0.07 Total: -24.71 kcal Atomic # 14 Polarization: 47.59 SS G_CDS: 2.03 Total: 49.61 kcal Atomic # 16 Polarization: 4.59 SS G_CDS: -1.21 Total: 3.39 kcal Total: -76.06 1.49 -74.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281759376.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.547 kcal (2) G-P(sol) polarization free energy of solvation -76.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds