Wall clock time and date at job start Tue Mar 31 2020 22:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.53005 * 109.46867 * 175.00027 * 4 2 1 6 6 C 1.53008 * 109.46774 * 180.02562 * 5 4 2 7 7 N 1.46497 * 109.46734 * 179.97438 * 6 5 4 8 8 C 1.36943 * 119.99762 * 179.97438 * 7 6 5 9 9 H 1.07994 * 119.99644 * 0.02562 * 8 7 6 10 10 C 1.38812 * 119.99581 * 180.02562 * 8 7 6 11 11 N 1.31621 * 119.99394 * 180.02562 * 10 8 7 12 12 Si 1.86793 * 120.00467 * 0.02562 * 10 8 7 13 13 H 1.48494 * 109.47318 * 89.99708 * 12 10 8 14 14 H 1.48501 * 109.47211 * 209.99716 * 12 10 8 15 15 H 1.48500 * 109.47329 * 329.99909 * 12 10 8 16 16 N 1.46499 * 109.46799 * 120.00100 * 2 1 3 17 17 C 1.34778 * 119.99771 * 274.99826 * 16 2 1 18 18 O 1.21612 * 120.00049 * 0.02562 * 17 16 2 19 19 C 1.47263 * 119.99956 * 180.02562 * 17 16 2 20 20 N 1.30555 * 125.54045 * 179.71612 * 19 17 16 21 21 C 1.30704 * 115.90590 * 179.81403 * 20 19 17 22 22 C 1.50699 * 122.11184 * 180.22217 * 21 20 19 23 23 C 1.53000 * 109.47097 * 255.27895 * 22 21 20 24 24 C 1.52997 * 109.46839 * 15.27717 * 22 21 20 25 25 C 1.52996 * 109.46986 * 135.27679 * 22 21 20 26 26 C 1.34238 * 115.78126 * 0.48400 * 21 20 19 27 27 S 1.71071 * 109.09120 * 359.74030 * 26 21 20 28 28 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 29 29 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 30 30 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 31 31 H 1.08990 * 109.47170 * 295.00238 * 4 2 1 32 32 H 1.09001 * 109.46952 * 55.00315 * 4 2 1 33 33 H 1.09000 * 109.47443 * 300.00098 * 5 4 2 34 34 H 1.09001 * 109.47099 * 60.00379 * 5 4 2 35 35 H 1.09000 * 109.47044 * 300.00132 * 6 5 4 36 36 H 1.09001 * 109.47171 * 60.00211 * 6 5 4 37 37 H 0.97003 * 120.00464 * 0.02562 * 7 6 5 38 38 H 0.97005 * 119.99558 * 180.02562 * 11 10 8 39 39 H 0.96998 * 120.00630 * 95.00428 * 16 2 1 40 40 H 1.08996 * 109.47075 * 59.99786 * 23 22 21 41 41 H 1.09002 * 109.46637 * 179.97438 * 23 22 21 42 42 H 1.09003 * 109.47001 * 299.99379 * 23 22 21 43 43 H 1.09000 * 109.47302 * 60.00022 * 24 22 21 44 44 H 1.09005 * 109.47420 * 180.02562 * 24 22 21 45 45 H 1.09004 * 109.47493 * 299.99896 * 24 22 21 46 46 H 1.08996 * 109.47288 * 60.00606 * 25 22 21 47 47 H 1.09002 * 109.47171 * 180.02562 * 25 22 21 48 48 H 1.09000 * 109.47149 * 299.99974 * 25 22 21 49 49 H 1.07994 * 125.45221 * 179.73844 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 6 4.0749 -1.3341 -2.5632 7 7 5.5349 -1.2302 -2.6251 8 6 6.2187 -1.8044 -3.6633 9 1 5.6816 -2.3335 -4.4366 10 6 7.6021 -1.7064 -3.7217 11 7 8.2593 -2.2578 -4.7199 12 14 8.5310 -0.7919 -2.3838 13 1 8.8922 -1.7373 -1.2972 14 1 9.7669 -0.1995 -2.9556 15 1 7.6725 0.2883 -1.8349 16 7 2.0183 -0.6906 1.1962 17 6 2.1470 -0.0182 2.3571 18 8 1.8573 1.1616 2.4118 19 6 2.6383 -0.7123 3.5594 20 7 2.8089 -0.1677 4.7336 21 6 3.2523 -0.9617 5.6724 22 6 3.4945 -0.4809 7.0800 23 6 4.9984 -0.3229 7.3132 24 6 2.8022 0.8680 7.2843 25 6 2.9290 -1.4998 8.0713 26 6 3.4834 -2.2312 5.3024 27 16 3.0984 -2.4099 3.6452 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.7517 -1.7715 -1.2055 32 1 1.6055 -0.2618 -2.1369 33 1 3.8533 0.4369 -1.3572 34 1 3.9995 -1.0728 -0.4258 35 1 3.7865 -2.3844 -2.5199 36 1 3.6403 -0.8743 -3.4507 37 1 6.0173 -0.7553 -1.9303 38 1 9.2261 -2.1896 -4.7605 39 1 2.2490 -1.6318 1.1527 40 1 5.4012 0.4030 6.6069 41 1 5.1735 0.0253 8.3311 42 1 5.4916 -1.2840 7.1676 43 1 1.7308 0.7555 7.1181 44 1 2.9777 1.2161 8.3023 45 1 3.2051 1.5940 6.5780 46 1 3.4222 -2.4608 7.9258 47 1 3.1038 -1.1519 9.0894 48 1 1.8576 -1.6124 7.9051 49 1 3.8533 -3.0143 5.9476 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283190593.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:02 Heat of formation + Delta-G solvation = -0.811312 kcal Electronic energy + Delta-G solvation = -26793.184172 eV Core-core repulsion = 23074.825170 eV Total energy + Delta-G solvation = -3718.359001 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.88143 -39.81992 -37.02063 -36.25875 -35.06264 -32.78234 -31.54304 -30.43685 -29.78619 -27.87716 -27.64437 -26.30355 -25.84947 -23.51428 -22.49264 -21.01922 -20.91485 -20.62635 -19.46557 -18.34227 -17.51749 -17.14258 -16.59317 -15.84354 -15.69702 -14.91806 -14.79568 -14.69089 -14.32970 -14.22352 -14.00819 -13.91186 -13.74337 -13.54827 -13.02041 -12.71369 -12.64563 -12.57969 -12.46897 -12.33046 -12.24522 -12.00653 -11.74717 -11.35091 -11.32443 -11.30910 -11.18077 -11.02036 -10.93338 -10.67706 -10.51618 -10.43725 -10.11740 -10.04289 -9.92430 -9.59694 -9.40764 -9.07710 -8.89390 -7.23063 -5.77155 -3.12457 -0.09408 0.82178 1.23946 2.02200 2.54920 2.94830 3.37462 3.41189 3.45362 3.86593 4.32008 4.41297 4.58280 4.59416 4.59935 4.72985 4.81498 4.88923 4.93506 5.01190 5.20397 5.30670 5.31996 5.36441 5.39352 5.43870 5.48515 5.52833 5.53184 5.60082 5.63279 5.68349 5.79548 5.84822 5.89488 5.92973 5.93512 6.04500 6.07524 6.11001 6.25062 6.25660 6.72962 6.76404 7.01176 7.34036 7.83089 7.99443 8.42225 9.21501 9.94171 10.13998 11.41325 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010715 B = 0.002698 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2612.541630 B =10376.959557 C =12050.683548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.143 3.857 3 H 0.094 0.906 4 C -0.123 4.123 5 C -0.132 4.132 6 C 0.157 3.843 7 N -0.758 5.758 8 C -0.244 4.244 9 H 0.090 0.910 10 C 0.003 3.997 11 N -0.935 5.935 12 Si 0.884 3.116 13 H -0.284 1.284 14 H -0.290 1.290 15 H -0.277 1.277 16 N -0.712 5.712 17 C 0.597 3.403 18 O -0.500 6.500 19 C -0.005 4.005 20 N -0.389 5.389 21 C 0.069 3.931 22 C 0.004 3.996 23 C -0.139 4.139 24 C -0.131 4.131 25 C -0.140 4.140 26 C -0.261 4.261 27 S 0.184 5.816 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.026 0.974 36 H 0.026 0.974 37 H 0.360 0.640 38 H 0.259 0.741 39 H 0.400 0.600 40 H 0.059 0.941 41 H 0.065 0.935 42 H 0.057 0.943 43 H 0.056 0.944 44 H 0.055 0.945 45 H 0.066 0.934 46 H 0.057 0.943 47 H 0.065 0.935 48 H 0.058 0.942 49 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.120 -0.261 25.426 30.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.040 3.960 3 H 0.112 0.888 4 C -0.162 4.162 5 C -0.170 4.170 6 C 0.030 3.970 7 N -0.404 5.404 8 C -0.374 4.374 9 H 0.108 0.892 10 C -0.193 4.193 11 N -0.583 5.583 12 Si 0.715 3.285 13 H -0.211 1.211 14 H -0.217 1.217 15 H -0.203 1.203 16 N -0.365 5.365 17 C 0.378 3.622 18 O -0.374 6.374 19 C -0.282 4.282 20 N -0.105 5.105 21 C -0.069 4.069 22 C 0.001 3.999 23 C -0.197 4.197 24 C -0.189 4.189 25 C -0.197 4.197 26 C -0.401 4.401 27 S 0.440 5.560 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.104 0.896 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.044 0.956 36 H 0.044 0.956 37 H 0.193 0.807 38 H 0.069 0.931 39 H 0.234 0.766 40 H 0.078 0.922 41 H 0.084 0.916 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.074 0.926 45 H 0.085 0.915 46 H 0.076 0.924 47 H 0.084 0.916 48 H 0.077 0.923 49 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -16.402 0.221 24.505 29.489 hybrid contribution 1.222 0.239 1.773 2.166 sum -15.180 0.460 26.278 30.351 Atomic orbital electron populations 1.22190 0.94891 1.02334 1.02794 1.21170 0.94017 0.97866 0.82977 0.88789 1.21864 0.96627 1.01112 0.96581 1.21815 0.94087 1.01566 0.99528 1.20625 0.84890 0.97087 0.94398 1.42740 1.01756 1.66988 1.28878 1.19072 0.89888 1.27290 1.01142 0.89228 1.24681 0.96206 1.00538 0.97830 1.69707 1.07303 1.49395 1.31878 0.86544 0.79778 0.80008 0.82201 1.21099 1.21676 1.20327 1.45917 1.67333 1.13997 1.09279 1.16664 0.78256 0.86060 0.81201 1.90852 1.48344 1.14371 1.83799 1.27486 1.09269 0.94166 0.97230 1.66436 1.10783 1.35084 0.98194 1.20236 1.01032 0.88731 0.96906 1.19220 0.96695 0.96671 0.87332 1.21905 0.93370 1.02229 1.02188 1.21731 1.00566 0.95287 1.01316 1.21934 1.01125 0.98116 0.98551 1.26495 1.10575 1.02511 1.00551 1.83936 1.55821 1.11343 1.04914 0.92130 0.91085 0.92266 0.91021 0.89624 0.91805 0.92190 0.95635 0.95585 0.80721 0.93071 0.76564 0.92153 0.91640 0.92425 0.92466 0.92558 0.91493 0.92393 0.91589 0.92309 0.79905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.45 9.48 37.16 0.35 -1.10 16 2 C 0.14 1.48 2.57 -67.93 -0.17 1.31 16 3 H 0.09 1.14 7.58 -51.93 -0.39 0.74 16 4 C -0.12 -1.28 4.75 -26.73 -0.13 -1.41 16 5 C -0.13 -1.88 5.22 -26.72 -0.14 -2.02 16 6 C 0.16 2.93 6.26 -4.04 -0.03 2.90 16 7 N -0.76 -18.18 5.41 -59.91 -0.32 -18.50 16 8 C -0.24 -6.98 10.47 -15.06 -0.16 -7.14 16 9 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 10 C 0.00 0.09 5.50 -17.43 -0.10 0.00 16 11 N -0.93 -29.58 13.97 55.49 0.78 -28.81 16 12 Si 0.88 22.42 27.74 -169.99 -4.71 17.70 16 13 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 14 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 15 H -0.28 -6.67 6.52 56.52 0.37 -6.31 16 16 N -0.71 -7.48 4.53 -54.93 -0.25 -7.73 16 17 C 0.60 7.85 7.77 -12.59 -0.10 7.75 16 18 O -0.50 -8.32 16.73 5.27 0.09 -8.23 16 19 C -0.01 -0.06 7.46 -14.43 -0.11 -0.17 16 20 N -0.39 -5.01 9.53 -7.69 -0.07 -5.09 16 21 C 0.07 0.70 5.38 -84.48 -0.45 0.25 16 22 C 0.00 0.03 0.90 -155.66 -0.14 -0.11 16 23 C -0.14 -1.02 8.42 37.16 0.31 -0.71 16 24 C -0.13 -1.16 7.90 37.16 0.29 -0.86 16 25 C -0.14 -0.84 8.12 37.16 0.30 -0.53 16 26 C -0.26 -2.16 10.10 29.32 0.30 -1.87 16 27 S 0.18 1.58 22.31 -107.50 -2.40 -0.82 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.06 0.84 7.75 -51.93 -0.40 0.44 16 35 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.36 8.49 5.53 -40.82 -0.23 8.27 16 38 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 39 H 0.40 3.43 7.75 -40.82 -0.32 3.12 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.07 0.71 7.95 -51.93 -0.41 0.30 16 46 H 0.06 0.29 7.07 -51.93 -0.37 -0.08 16 47 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 48 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 49 H 0.18 1.02 7.23 -52.49 -0.38 0.64 16 LS Contribution 410.59 15.07 6.19 6.19 Total: -1.00 -35.13 410.59 -9.10 -44.23 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -8.43 Total: 4.77 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: 0.04 Total: -3.71 kcal Atomic # 7 Polarization: -60.25 SS G_CDS: 0.13 Total: -60.12 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: 0.09 Total: -8.23 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -4.71 Total: 17.70 kcal Atomic # 16 Polarization: 1.58 SS G_CDS: -2.40 Total: -0.82 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -35.13 -9.10 -44.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283190593.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.420 kcal (2) G-P(sol) polarization free energy of solvation -35.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds