Wall clock time and date at job start Tue Mar 31 2020 22:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.53005 * 109.46867 * 175.00027 * 4 2 1 6 6 C 1.53008 * 109.46774 * 180.02562 * 5 4 2 7 7 N 1.46497 * 109.46734 * 179.97438 * 6 5 4 8 8 C 1.36943 * 119.99762 * 179.97438 * 7 6 5 9 9 H 1.07994 * 119.99644 * 0.02562 * 8 7 6 10 10 C 1.38812 * 119.99581 * 180.02562 * 8 7 6 11 11 N 1.31621 * 119.99394 * 180.02562 * 10 8 7 12 12 Si 1.86793 * 120.00467 * 0.02562 * 10 8 7 13 13 H 1.48494 * 109.47318 * 89.99708 * 12 10 8 14 14 H 1.48501 * 109.47211 * 209.99716 * 12 10 8 15 15 H 1.48500 * 109.47329 * 329.99909 * 12 10 8 16 16 N 1.46499 * 109.46799 * 120.00100 * 2 1 3 17 17 C 1.34778 * 119.99771 * 274.99826 * 16 2 1 18 18 O 1.21612 * 120.00049 * 0.02562 * 17 16 2 19 19 C 1.47263 * 119.99956 * 180.02562 * 17 16 2 20 20 N 1.30555 * 125.54045 * 179.71612 * 19 17 16 21 21 C 1.30704 * 115.90590 * 179.81403 * 20 19 17 22 22 C 1.50699 * 122.11184 * 180.22217 * 21 20 19 23 23 C 1.53000 * 109.47097 * 255.27895 * 22 21 20 24 24 C 1.52997 * 109.46839 * 15.27717 * 22 21 20 25 25 C 1.52996 * 109.46986 * 135.27679 * 22 21 20 26 26 C 1.34238 * 115.78126 * 0.48400 * 21 20 19 27 27 S 1.71071 * 109.09120 * 359.74030 * 26 21 20 28 28 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 29 29 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 30 30 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 31 31 H 1.08990 * 109.47170 * 295.00238 * 4 2 1 32 32 H 1.09001 * 109.46952 * 55.00315 * 4 2 1 33 33 H 1.09000 * 109.47443 * 300.00098 * 5 4 2 34 34 H 1.09001 * 109.47099 * 60.00379 * 5 4 2 35 35 H 1.09000 * 109.47044 * 300.00132 * 6 5 4 36 36 H 1.09001 * 109.47171 * 60.00211 * 6 5 4 37 37 H 0.97003 * 120.00464 * 0.02562 * 7 6 5 38 38 H 0.97005 * 119.99558 * 180.02562 * 11 10 8 39 39 H 0.96998 * 120.00630 * 95.00428 * 16 2 1 40 40 H 1.08996 * 109.47075 * 59.99786 * 23 22 21 41 41 H 1.09002 * 109.46637 * 179.97438 * 23 22 21 42 42 H 1.09003 * 109.47001 * 299.99379 * 23 22 21 43 43 H 1.09000 * 109.47302 * 60.00022 * 24 22 21 44 44 H 1.09005 * 109.47420 * 180.02562 * 24 22 21 45 45 H 1.09004 * 109.47493 * 299.99896 * 24 22 21 46 46 H 1.08996 * 109.47288 * 60.00606 * 25 22 21 47 47 H 1.09002 * 109.47171 * 180.02562 * 25 22 21 48 48 H 1.09000 * 109.47149 * 299.99974 * 25 22 21 49 49 H 1.07994 * 125.45221 * 179.73844 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 6 4.0749 -1.3341 -2.5632 7 7 5.5349 -1.2302 -2.6251 8 6 6.2187 -1.8044 -3.6633 9 1 5.6816 -2.3335 -4.4366 10 6 7.6021 -1.7064 -3.7217 11 7 8.2593 -2.2578 -4.7199 12 14 8.5310 -0.7919 -2.3838 13 1 8.8922 -1.7373 -1.2972 14 1 9.7669 -0.1995 -2.9556 15 1 7.6725 0.2883 -1.8349 16 7 2.0183 -0.6906 1.1962 17 6 2.1470 -0.0182 2.3571 18 8 1.8573 1.1616 2.4118 19 6 2.6383 -0.7123 3.5594 20 7 2.8089 -0.1677 4.7336 21 6 3.2523 -0.9617 5.6724 22 6 3.4945 -0.4809 7.0800 23 6 4.9984 -0.3229 7.3132 24 6 2.8022 0.8680 7.2843 25 6 2.9290 -1.4998 8.0713 26 6 3.4834 -2.2312 5.3024 27 16 3.0984 -2.4099 3.6452 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.7517 -1.7715 -1.2055 32 1 1.6055 -0.2618 -2.1369 33 1 3.8533 0.4369 -1.3572 34 1 3.9995 -1.0728 -0.4258 35 1 3.7865 -2.3844 -2.5199 36 1 3.6403 -0.8743 -3.4507 37 1 6.0173 -0.7553 -1.9303 38 1 9.2261 -2.1896 -4.7605 39 1 2.2490 -1.6318 1.1527 40 1 5.4012 0.4030 6.6069 41 1 5.1735 0.0253 8.3311 42 1 5.4916 -1.2840 7.1676 43 1 1.7308 0.7555 7.1181 44 1 2.9777 1.2161 8.3023 45 1 3.2051 1.5940 6.5780 46 1 3.4222 -2.4608 7.9258 47 1 3.1038 -1.1519 9.0894 48 1 1.8576 -1.6124 7.9051 49 1 3.8533 -3.0143 5.9476 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283190593.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:01 Heat of formation + Delta-G solvation = -24.580501 kcal Electronic energy + Delta-G solvation = -26794.214881 eV Core-core repulsion = 23074.825170 eV Total energy + Delta-G solvation = -3719.389711 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.66303 -40.71069 -38.09383 -37.00387 -36.62365 -34.30525 -33.04534 -31.51426 -30.85506 -28.51522 -28.16890 -27.40341 -26.93024 -24.64390 -23.86831 -22.50742 -21.81321 -21.46722 -20.19802 -19.62305 -19.06379 -17.94162 -17.50930 -16.69001 -16.62902 -16.42572 -15.93992 -15.83152 -15.57587 -15.26787 -14.96808 -14.83860 -14.62521 -14.57322 -14.36057 -13.90805 -13.59220 -13.50563 -13.33633 -13.10291 -13.09244 -13.02473 -12.84786 -12.59358 -12.50233 -12.14769 -12.06705 -11.95383 -11.92746 -11.88651 -11.83137 -11.74552 -11.56789 -11.49977 -10.97336 -10.77576 -10.74968 -10.32968 -9.78342 -9.29688 -8.04174 -5.37120 -0.86504 0.08183 0.53063 1.21288 1.36388 1.38790 1.46357 1.71297 2.06807 2.46578 3.17416 3.27446 3.47551 3.62444 3.79728 3.86392 4.02307 4.08206 4.13016 4.15044 4.23184 4.28245 4.38192 4.54581 4.60932 4.73946 4.75434 4.78705 4.81928 4.84089 4.86448 4.87052 4.97816 4.99000 4.99491 5.11175 5.12879 5.28218 5.28719 5.31218 5.37919 5.41942 5.42191 5.47415 5.75444 6.17890 6.20881 6.60259 6.93423 7.07221 7.84904 8.02185 9.17404 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010715 B = 0.002698 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2612.541630 B =10376.959557 C =12050.683548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.145 3.855 3 H 0.073 0.927 4 C -0.111 4.111 5 C -0.121 4.121 6 C 0.152 3.848 7 N -0.764 5.764 8 C -0.234 4.234 9 H 0.059 0.941 10 C -0.065 4.065 11 N -0.983 5.983 12 Si 0.954 3.046 13 H -0.275 1.275 14 H -0.295 1.295 15 H -0.257 1.257 16 N -0.700 5.700 17 C 0.595 3.405 18 O -0.549 6.549 19 C -0.048 4.048 20 N -0.422 5.422 21 C 0.048 3.952 22 C 0.002 3.998 23 C -0.136 4.136 24 C -0.128 4.128 25 C -0.135 4.135 26 C -0.250 4.250 27 S 0.246 5.754 28 H 0.042 0.958 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.054 0.946 34 H 0.063 0.937 35 H 0.033 0.967 36 H 0.025 0.975 37 H 0.364 0.636 38 H 0.258 0.742 39 H 0.410 0.590 40 H 0.037 0.963 41 H 0.081 0.919 42 H 0.068 0.932 43 H 0.043 0.957 44 H 0.074 0.926 45 H 0.039 0.961 46 H 0.073 0.927 47 H 0.079 0.921 48 H 0.051 0.949 49 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.595 -1.651 27.730 32.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.041 3.959 3 H 0.091 0.909 4 C -0.150 4.150 5 C -0.159 4.159 6 C 0.026 3.974 7 N -0.409 5.409 8 C -0.365 4.365 9 H 0.077 0.923 10 C -0.256 4.256 11 N -0.634 5.634 12 Si 0.781 3.219 13 H -0.201 1.201 14 H -0.222 1.222 15 H -0.182 1.182 16 N -0.353 5.353 17 C 0.378 3.622 18 O -0.427 6.427 19 C -0.322 4.322 20 N -0.139 5.139 21 C -0.090 4.090 22 C -0.001 4.001 23 C -0.194 4.194 24 C -0.186 4.186 25 C -0.193 4.193 26 C -0.391 4.391 27 S 0.501 5.499 28 H 0.061 0.939 29 H 0.103 0.897 30 H 0.094 0.906 31 H 0.111 0.889 32 H 0.116 0.884 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.051 0.949 36 H 0.043 0.957 37 H 0.196 0.804 38 H 0.067 0.933 39 H 0.247 0.753 40 H 0.056 0.944 41 H 0.099 0.901 42 H 0.087 0.913 43 H 0.062 0.938 44 H 0.093 0.907 45 H 0.059 0.941 46 H 0.092 0.908 47 H 0.097 0.903 48 H 0.071 0.929 49 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -16.932 -1.188 26.809 31.731 hybrid contribution 1.311 0.564 1.016 1.752 sum -15.621 -0.624 27.825 31.916 Atomic orbital electron populations 1.22128 0.93395 1.03382 1.02622 1.21145 0.95119 0.96831 0.82795 0.90860 1.21788 0.93634 1.02598 0.96946 1.21704 0.96701 1.00258 0.97279 1.20856 0.81963 0.98050 0.96516 1.42824 1.03909 1.66532 1.27659 1.19082 0.90137 1.26070 1.01249 0.92295 1.25505 0.97337 1.02243 1.00530 1.69884 1.07489 1.51649 1.34374 0.85427 0.78085 0.79175 0.79210 1.20090 1.22216 1.18224 1.45860 1.66437 1.14370 1.08649 1.16937 0.77577 0.85636 0.82064 1.90811 1.50716 1.16427 1.84700 1.27285 1.11650 0.96506 0.96807 1.66422 1.11475 1.36963 0.99081 1.20577 1.01704 0.89369 0.97388 1.19331 0.97160 0.96602 0.87021 1.21891 0.92733 1.02262 1.02506 1.21685 0.99645 0.95615 1.01613 1.21912 1.00699 0.98159 0.98484 1.26970 1.08580 1.02510 1.00999 1.83632 1.53886 1.07732 1.04610 0.93885 0.89710 0.90553 0.88904 0.88382 0.92743 0.91844 0.94930 0.95734 0.80354 0.93318 0.75286 0.94350 0.90054 0.91284 0.93775 0.90670 0.94131 0.90770 0.90253 0.92949 0.76706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.53 9.48 71.98 0.68 -1.85 16 2 C 0.14 2.80 2.57 44.99 0.12 2.92 16 3 H 0.07 1.77 7.58 -2.39 -0.02 1.75 16 4 C -0.11 -2.02 4.75 30.60 0.15 -1.87 16 5 C -0.12 -3.21 5.22 30.60 0.16 -3.05 16 6 C 0.15 5.41 6.26 86.38 0.54 5.95 16 7 N -0.76 -35.69 5.41 -343.44 -1.86 -37.55 16 8 C -0.23 -13.45 10.47 84.03 0.88 -12.57 16 9 H 0.06 3.68 8.06 -2.91 -0.02 3.65 16 10 C -0.06 -3.85 5.50 84.86 0.47 -3.38 16 11 N -0.98 -63.33 13.97 21.65 0.30 -63.03 16 12 Si 0.95 46.04 27.74 68.60 1.90 47.94 16 13 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 14 H -0.30 -14.43 7.11 99.48 0.71 -13.73 16 15 H -0.26 -11.44 6.52 99.48 0.65 -10.79 16 16 N -0.70 -13.95 4.53 -445.96 -2.02 -15.97 16 17 C 0.60 15.87 7.77 86.62 0.67 16.54 16 18 O -0.55 -19.21 16.73 -4.07 -0.07 -19.28 16 19 C -0.05 -1.16 7.46 87.26 0.65 -0.51 16 20 N -0.42 -11.06 9.53 -178.24 -1.70 -12.75 16 21 C 0.05 0.92 5.38 41.81 0.22 1.14 16 22 C 0.00 0.02 0.90 -52.93 -0.05 -0.02 16 23 C -0.14 -1.78 8.42 71.98 0.61 -1.18 16 24 C -0.13 -2.28 7.90 71.98 0.57 -1.71 16 25 C -0.13 -1.27 8.12 71.98 0.58 -0.69 16 26 C -0.25 -3.46 10.10 66.91 0.68 -2.79 16 27 S 0.25 3.63 22.31 -56.49 -1.26 2.37 16 28 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.08 1.13 8.14 -2.39 -0.02 1.12 16 30 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.05 1.55 8.14 -2.39 -0.02 1.54 16 34 H 0.06 1.64 7.75 -2.39 -0.02 1.62 16 35 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.02 0.89 8.14 -2.39 -0.02 0.88 16 37 H 0.36 16.41 5.53 -92.71 -0.51 15.90 16 38 H 0.26 15.80 8.31 -92.70 -0.77 15.03 16 39 H 0.41 6.18 7.75 -92.71 -0.72 5.46 16 40 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 45 H 0.04 0.92 7.95 -2.39 -0.02 0.90 16 46 H 0.07 0.46 7.07 -2.39 -0.02 0.44 16 47 H 0.08 0.54 8.14 -2.39 -0.02 0.53 16 48 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 49 H 0.22 1.44 7.23 -2.91 -0.02 1.42 16 Total: -1.00 -79.27 410.59 1.88 -77.39 By element: Atomic # 1 Polarization: 24.29 SS G_CDS: -0.35 Total: 23.94 kcal Atomic # 6 Polarization: -9.99 SS G_CDS: 6.93 Total: -3.06 kcal Atomic # 7 Polarization: -124.03 SS G_CDS: -5.27 Total: -129.30 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -0.07 Total: -19.28 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 1.90 Total: 47.94 kcal Atomic # 16 Polarization: 3.63 SS G_CDS: -1.26 Total: 2.37 kcal Total: -79.27 1.88 -77.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283190593.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.806 kcal (2) G-P(sol) polarization free energy of solvation -79.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds